Wall clock time and date at job start Mon Mar 30 2020 06:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47081 * 2 1 4 4 C 1.40802 * 120.10270 * 269.97767 * 3 2 1 5 5 C 1.41353 * 119.95924 * 0.02562 * 4 3 2 6 6 H 1.07998 * 120.00177 * 25.96017 * 5 4 3 7 7 C 1.39844 * 120.00050 * 205.95768 * 5 4 3 8 8 N 1.30898 * 119.99864 * 15.72877 * 7 5 4 9 9 Si 1.86800 * 119.99806 * 195.72862 * 7 5 4 10 10 H 1.48499 * 109.47214 * 60.00046 * 9 7 5 11 11 H 1.48502 * 109.46650 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47127 * 299.99711 * 9 7 5 13 13 C 1.39988 * 120.08509 * 180.02562 * 4 3 2 14 14 C 1.40498 * 120.47615 * 0.06448 * 13 4 3 15 15 C 1.45653 * 129.05008 * 179.97438 * 14 13 4 16 16 C 1.31646 * 114.90809 * 179.97438 * 15 14 13 17 17 S 1.75267 * 111.49659 * 0.02562 * 16 15 14 18 18 C 1.40024 * 119.21192 * 359.93006 * 14 13 4 19 19 C 1.38281 * 120.10605 * 89.99811 * 3 2 1 20 20 C 1.43193 * 119.83008 * 359.97438 * 19 3 2 21 21 N 3.53889 * 94.92386 * 75.84520 * 2 1 3 22 22 H 1.08993 * 109.47321 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47280 * 300.00258 * 1 2 3 24 24 H 1.08995 * 109.46880 * 60.00242 * 1 2 3 25 25 H 1.08995 * 109.47280 * 239.99742 * 2 1 3 26 26 H 1.09007 * 109.46632 * 119.99499 * 2 1 3 27 27 H 0.97003 * 120.00030 * 180.02562 * 8 7 5 28 28 H 1.07999 * 119.76399 * 180.02562 * 13 4 3 29 29 H 1.08002 * 122.54691 * 359.96864 * 15 14 13 30 30 H 1.08000 * 124.25544 * 180.26469 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0865 -1.2181 5 6 2.0330 1.4214 -2.4430 6 1 1.3140 0.6170 -2.4914 7 6 2.7313 1.8050 -3.5923 8 7 3.8040 2.5481 -3.4889 9 14 2.1334 1.2569 -5.2750 10 1 0.7584 1.7695 -5.5029 11 1 3.0406 1.7929 -6.3214 12 1 2.1255 -0.2266 -5.3385 13 6 2.7353 3.4061 -1.2177 14 6 2.9741 4.0771 -0.0066 15 6 3.4553 5.4345 0.2110 16 6 3.5793 5.7830 1.4744 17 16 3.1176 4.4776 2.5490 18 6 2.7378 3.4107 1.2020 19 6 2.2635 2.0748 1.1963 20 6 2.0239 1.3987 2.4356 21 7 1.8338 0.8622 3.4188 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.2882 2.8145 -4.2861 28 1 2.9141 3.9119 -2.1550 29 1 3.6926 6.1042 -0.6024 30 1 3.9188 6.7528 1.8071 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396222350.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:10 Heat of formation + Delta-G solvation = 38.532903 kcal Electronic energy + Delta-G solvation = -16028.280475 eV Core-core repulsion = 13492.557971 eV Total energy + Delta-G solvation = -2535.722504 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37851 -37.71243 -36.87475 -35.33207 -33.32375 -31.79808 -29.53729 -27.38133 -24.91665 -24.41670 -22.41044 -21.44245 -19.56646 -18.57930 -17.41326 -17.12019 -16.43099 -15.71541 -15.21468 -15.11371 -15.00566 -14.31111 -14.12533 -13.95057 -13.79350 -13.67677 -13.51791 -13.09126 -13.00019 -12.77244 -12.47924 -12.31557 -12.00666 -11.71993 -11.51090 -11.46019 -11.25463 -10.91317 -10.09907 -9.13117 -8.61523 -8.52705 -6.28421 0.01220 0.34277 0.89633 1.30362 1.33132 1.48652 1.57373 1.64553 1.67759 2.23008 2.26540 2.74728 3.06665 3.56838 3.97617 4.19716 4.24377 4.55784 4.61223 4.70997 4.83565 4.87874 5.03301 5.10788 5.17245 5.27752 5.31671 5.40459 5.52211 5.56465 5.78800 5.98311 6.08719 6.47273 6.56286 6.86023 6.89946 8.34309 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.008492 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.827109 B = 3296.375956 C = 4535.555267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 C -0.091 4.091 4 C 0.083 3.917 5 C -0.468 4.468 6 H 0.095 0.905 7 C 0.040 3.960 8 N -0.817 5.817 9 Si 0.975 3.025 10 H -0.260 1.260 11 H -0.274 1.274 12 H -0.260 1.260 13 C -0.130 4.130 14 C -0.070 4.070 15 C -0.123 4.123 16 C -0.180 4.180 17 S 0.015 5.985 18 C -0.207 4.207 19 C -0.006 4.006 20 C 0.284 3.716 21 N -0.465 5.465 22 H 0.073 0.927 23 H 0.038 0.962 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.290 0.710 28 H 0.121 0.879 29 H 0.157 0.843 30 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 2.955 -0.353 3.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.097 4.097 4 C 0.079 3.921 5 C -0.497 4.497 6 H 0.113 0.887 7 C -0.177 4.177 8 N -0.442 5.442 9 Si 0.797 3.203 10 H -0.184 1.184 11 H -0.199 1.199 12 H -0.184 1.184 13 C -0.153 4.153 14 C -0.076 4.076 15 C -0.154 4.154 16 C -0.313 4.313 17 S 0.274 5.726 18 C -0.324 4.324 19 C -0.015 4.015 20 C -0.030 4.030 21 N -0.142 5.142 22 H 0.092 0.908 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.139 0.861 29 H 0.174 0.826 30 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.597 2.154 2.604 3.738 hybrid contribution 0.228 0.246 -2.514 2.536 sum -1.369 2.400 0.090 2.765 Atomic orbital electron populations 1.21648 0.94016 1.02127 1.01438 1.20381 0.96787 0.91814 1.01927 1.20153 1.02703 0.96182 0.90655 1.17389 0.91282 0.91336 0.92061 1.19780 1.20762 1.16784 0.92378 0.88741 1.26647 0.93033 0.93423 1.04579 1.69847 1.12744 1.28351 1.33303 0.85325 0.79248 0.79675 0.76085 1.18447 1.19873 1.18398 1.21379 1.04474 0.94250 0.95178 1.19421 1.01438 0.94068 0.92720 1.21171 1.01871 0.94506 0.97802 1.25090 1.07599 1.03155 0.95450 1.83615 1.73130 1.06471 1.09416 1.22105 1.16042 0.97582 0.96678 1.15055 1.08606 0.91535 0.86283 1.25977 0.92177 0.92244 0.92566 1.81072 1.11454 1.10161 1.11500 0.90784 0.94298 0.92163 0.89828 0.93106 0.89884 0.86115 0.82564 0.78695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.86 71.98 0.71 -3.68 16 2 C -0.07 -2.67 5.02 29.85 0.15 -2.52 16 3 C -0.09 -3.97 5.21 -19.23 -0.10 -4.07 16 4 C 0.08 3.89 5.55 -21.46 -0.12 3.77 16 5 C -0.47 -21.25 8.10 23.43 0.19 -21.06 16 6 H 0.09 4.01 6.53 -2.91 -0.02 3.99 16 7 C 0.04 1.73 5.16 85.22 0.44 2.17 16 8 N -0.82 -37.64 10.91 21.81 0.24 -37.40 16 9 Si 0.98 33.59 29.59 68.60 2.03 35.62 16 10 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 11 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 12 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 13 C -0.13 -6.07 8.72 23.25 0.20 -5.87 16 14 C -0.07 -3.01 6.02 -20.38 -0.12 -3.13 16 15 C -0.12 -4.28 10.38 23.54 0.24 -4.04 16 16 C -0.18 -5.49 11.00 67.18 0.74 -4.75 16 17 S 0.01 0.53 22.92 -56.49 -1.29 -0.77 16 18 C -0.21 -8.85 6.37 23.57 0.15 -8.70 16 19 C -0.01 -0.28 5.75 -21.15 -0.12 -0.40 16 20 C 0.28 11.85 13.45 88.33 1.19 13.04 16 21 N -0.46 -19.48 18.54 19.00 0.35 -19.13 16 22 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.98 7.85 -2.39 -0.02 1.97 16 25 H 0.08 3.10 6.76 -2.39 -0.02 3.09 16 26 H 0.05 1.86 7.05 -2.38 -0.02 1.85 16 27 H 0.29 12.21 8.30 -92.71 -0.77 11.44 16 28 H 0.12 5.81 6.12 -2.91 -0.02 5.79 16 29 H 0.16 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.20 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -51.40 278.86 6.05 -45.35 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 1.18 Total: 15.58 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 3.55 Total: -39.25 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.59 Total: -56.53 kcal Atomic # 14 Polarization: 33.59 SS G_CDS: 2.03 Total: 35.62 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -1.29 Total: -0.77 kcal Total: -51.40 6.05 -45.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396222350.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.882 kcal (2) G-P(sol) polarization free energy of solvation -51.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds