Wall clock time and date at job start Mon Mar 30 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47488 * 2 1 4 4 C 1.37852 * 120.04098 * 265.25425 * 3 2 1 5 5 C 1.37933 * 120.66274 * 180.27521 * 4 3 2 6 6 C 1.40907 * 120.83951 * 359.74376 * 5 4 3 7 7 C 1.46417 * 129.68112 * 180.02562 * 6 5 4 8 8 C 1.43201 * 123.01679 * 359.97438 * 7 6 5 9 9 N 7.65138 * 110.19302 * 346.13835 * 2 1 3 10 10 C 1.33833 * 113.96229 * 179.97438 * 7 6 5 11 11 S 1.70042 * 112.18568 * 0.02562 * 10 7 6 12 12 C 1.39138 * 119.29052 * 359.97438 * 6 5 4 13 13 C 1.40389 * 120.04762 * 84.99702 * 3 2 1 14 14 C 1.40939 * 120.12889 * 0.02562 * 13 3 2 15 15 H 1.08003 * 120.00303 * 43.38982 * 14 13 3 16 16 C 1.39950 * 119.99941 * 223.39341 * 14 13 3 17 17 N 1.30854 * 120.00006 * 207.35922 * 16 14 13 18 18 Si 1.86804 * 119.99988 * 27.35461 * 16 14 13 19 19 H 1.48501 * 109.47006 * 264.74467 * 18 16 14 20 20 H 1.48499 * 109.46782 * 24.74600 * 18 16 14 21 21 H 1.48497 * 109.46783 * 144.74527 * 18 16 14 22 22 H 1.08998 * 109.46998 * 60.00296 * 1 2 3 23 23 H 1.08998 * 109.47464 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46821 * 300.00871 * 1 2 3 25 25 H 1.08997 * 109.47517 * 239.99304 * 2 1 3 26 26 H 1.09006 * 109.46715 * 119.99615 * 2 1 3 27 27 H 1.08004 * 119.67113 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.58478 * 179.71683 * 5 4 3 29 29 H 1.08001 * 123.90723 * 180.02562 * 10 7 6 30 30 H 0.96997 * 120.00259 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3556 2.0385 -1.1892 5 6 2.8219 3.3365 -1.2037 6 6 2.9738 4.0629 -0.0059 7 6 3.4454 5.4332 0.2032 8 6 3.8497 6.2914 -0.8695 9 7 4.1711 6.9720 -1.7204 10 6 3.4645 5.8116 1.4867 11 16 2.9294 4.5781 2.5278 12 6 2.6470 3.4574 1.2035 13 6 2.1668 2.1189 1.2106 14 6 1.8331 1.4934 2.4287 15 1 2.1401 0.4748 2.6147 16 6 1.1038 2.1923 3.3974 17 7 1.2348 1.8854 4.6627 18 14 -0.0565 3.5633 2.8841 19 1 0.6437 4.8689 2.9873 20 1 -0.4914 3.3444 1.4812 21 1 -1.2439 3.5666 3.7757 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.2471 1.4991 -2.1186 28 1 3.0742 3.8020 -2.1450 29 1 3.7829 6.7874 1.8225 30 1 0.7296 2.3700 5.3341 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396222388.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:54 Heat of formation + Delta-G solvation = 52.019964 kcal Electronic energy + Delta-G solvation = -16207.052771 eV Core-core repulsion = 13671.915110 eV Total energy + Delta-G solvation = -2535.137661 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.80456 -36.65409 -34.93413 -33.64580 -32.01822 -30.54366 -27.86728 -25.67117 -24.12237 -22.40997 -21.46289 -19.79200 -18.19931 -16.60827 -16.40755 -15.34081 -14.69075 -14.49662 -13.89896 -13.75425 -13.31638 -13.06641 -12.71084 -12.60828 -12.49195 -12.30347 -12.12258 -11.63352 -11.38101 -11.19887 -11.04978 -10.81038 -10.37396 -10.23692 -9.98740 -9.87036 -9.63722 -9.29249 -8.26137 -7.61911 -7.13554 -6.82359 -4.61446 1.19713 2.15962 2.25777 2.48511 2.72989 3.02725 3.10336 3.12625 3.20587 3.80586 3.87666 4.33592 4.60319 4.96731 5.12625 5.72365 5.76959 5.89356 6.12486 6.21092 6.22513 6.24089 6.40495 6.54576 6.64920 6.75755 6.92168 7.00011 7.06083 7.21702 7.43803 7.63632 7.84551 7.89923 8.15573 8.40038 8.56694 9.88583 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.011189 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.258911 B = 2501.842067 C = 3541.164828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.170 4.170 4 C -0.063 4.063 5 C -0.205 4.205 6 C -0.012 4.012 7 C -0.064 4.064 8 C 0.291 3.709 9 N -0.453 5.453 10 C -0.197 4.197 11 S 0.198 5.802 12 C -0.226 4.226 13 C 0.140 3.860 14 C -0.462 4.462 15 H 0.102 0.898 16 C 0.100 3.900 17 N -0.787 5.787 18 Si 0.823 3.177 19 H -0.214 1.214 20 H -0.244 1.244 21 H -0.272 1.272 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.162 0.838 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 1.249 -1.507 2.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.175 4.175 4 C -0.082 4.082 5 C -0.227 4.227 6 C -0.019 4.019 7 C -0.086 4.086 8 C -0.024 4.024 9 N -0.130 5.130 10 C -0.338 4.338 11 S 0.469 5.531 12 C -0.342 4.342 13 C 0.135 3.865 14 C -0.491 4.491 15 H 0.120 0.880 16 C -0.121 4.121 17 N -0.410 5.410 18 Si 0.645 3.355 19 H -0.138 1.138 20 H -0.167 1.167 21 H -0.197 1.197 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.180 0.820 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.473 2.236 -0.871 2.446 hybrid contribution -0.504 0.543 -1.308 1.503 sum -0.978 2.779 -2.179 3.664 Atomic orbital electron populations 1.21663 0.96340 0.99913 1.01878 1.20101 0.95073 0.93301 1.00760 1.19709 1.08656 0.97444 0.91700 1.20422 0.97109 0.93932 0.96739 1.20081 1.12561 0.95556 0.94510 1.18428 0.99543 0.89822 0.94132 1.15767 1.11454 0.92931 0.88461 1.25309 0.92398 0.92242 0.92481 1.81140 1.11373 1.10570 1.09928 1.24990 1.04750 1.06290 0.97757 1.83337 1.60827 1.01031 1.07916 1.22803 1.15694 1.01600 0.94057 1.16851 0.89278 0.87165 0.93246 1.19216 1.31558 1.02089 0.96201 0.88001 1.25847 0.96343 0.96258 0.93686 1.69774 1.32659 1.37351 1.01245 0.87572 0.81982 0.84099 0.81837 1.13809 1.16670 1.19713 0.93824 0.94013 0.91966 0.93434 0.91307 0.87896 0.88386 0.82000 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.89 37.16 0.37 -2.02 16 2 C -0.05 -0.99 5.58 -27.88 -0.16 -1.15 16 3 C -0.17 -3.52 5.19 -103.95 -0.54 -4.06 16 4 C -0.06 -1.22 9.61 -39.83 -0.38 -1.60 16 5 C -0.21 -4.10 9.88 -38.68 -0.38 -4.49 16 6 C -0.01 -0.25 6.03 -105.26 -0.63 -0.89 16 7 C -0.06 -1.20 5.82 -106.23 -0.62 -1.82 16 8 C 0.29 5.38 15.42 -22.47 -0.35 5.03 16 9 N -0.45 -8.68 18.54 41.84 0.78 -7.90 16 10 C -0.20 -3.33 10.55 29.19 0.31 -3.02 16 11 S 0.20 3.79 17.80 -107.50 -1.91 1.88 16 12 C -0.23 -4.92 4.96 -37.72 -0.19 -5.10 16 13 C 0.14 3.16 4.62 -106.54 -0.49 2.67 16 14 C -0.46 -10.95 8.22 -37.92 -0.31 -11.26 16 15 H 0.10 2.54 7.04 -52.48 -0.37 2.17 16 16 C 0.10 2.33 4.59 -17.33 -0.08 2.25 16 17 N -0.79 -18.73 13.93 55.55 0.77 -17.96 16 18 Si 0.82 17.36 25.03 -169.99 -4.26 13.11 16 19 H -0.21 -4.16 5.36 58.48 0.31 -3.85 16 20 H -0.24 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 25 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 26 H 0.07 1.29 6.70 -51.93 -0.35 0.94 16 27 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 LS Contribution 273.73 15.07 4.13 4.13 Total: -1.00 -24.46 273.73 -6.83 -31.29 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -2.88 Total: 0.90 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -3.45 Total: -25.45 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 1.55 Total: -25.86 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -4.26 Total: 13.11 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.91 Total: 1.88 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -24.46 -6.83 -31.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396222388.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.310 kcal (2) G-P(sol) polarization free energy of solvation -24.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds