Wall clock time and date at job start Mon Mar 30 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47488 * 2 1 4 4 C 1.37852 * 120.04098 * 265.25425 * 3 2 1 5 5 C 1.37933 * 120.66274 * 180.27521 * 4 3 2 6 6 C 1.40907 * 120.83951 * 359.74376 * 5 4 3 7 7 C 1.46417 * 129.68112 * 180.02562 * 6 5 4 8 8 C 1.43201 * 123.01679 * 359.97438 * 7 6 5 9 9 N 7.65138 * 110.19302 * 346.13835 * 2 1 3 10 10 C 1.33833 * 113.96229 * 179.97438 * 7 6 5 11 11 S 1.70042 * 112.18568 * 0.02562 * 10 7 6 12 12 C 1.39138 * 119.29052 * 359.97438 * 6 5 4 13 13 C 1.40389 * 120.04762 * 84.99702 * 3 2 1 14 14 C 1.40939 * 120.12889 * 0.02562 * 13 3 2 15 15 H 1.08003 * 120.00303 * 43.38982 * 14 13 3 16 16 C 1.39950 * 119.99941 * 223.39341 * 14 13 3 17 17 N 1.30854 * 120.00006 * 207.35922 * 16 14 13 18 18 Si 1.86804 * 119.99988 * 27.35461 * 16 14 13 19 19 H 1.48501 * 109.47006 * 264.74467 * 18 16 14 20 20 H 1.48499 * 109.46782 * 24.74600 * 18 16 14 21 21 H 1.48497 * 109.46783 * 144.74527 * 18 16 14 22 22 H 1.08998 * 109.46998 * 60.00296 * 1 2 3 23 23 H 1.08998 * 109.47464 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46821 * 300.00871 * 1 2 3 25 25 H 1.08997 * 109.47517 * 239.99304 * 2 1 3 26 26 H 1.09006 * 109.46715 * 119.99615 * 2 1 3 27 27 H 1.08004 * 119.67113 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.58478 * 179.71683 * 5 4 3 29 29 H 1.08001 * 123.90723 * 180.02562 * 10 7 6 30 30 H 0.96997 * 120.00259 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3556 2.0385 -1.1892 5 6 2.8219 3.3365 -1.2037 6 6 2.9738 4.0629 -0.0059 7 6 3.4454 5.4332 0.2032 8 6 3.8497 6.2914 -0.8695 9 7 4.1711 6.9720 -1.7204 10 6 3.4645 5.8116 1.4867 11 16 2.9294 4.5781 2.5278 12 6 2.6470 3.4574 1.2035 13 6 2.1668 2.1189 1.2106 14 6 1.8331 1.4934 2.4287 15 1 2.1401 0.4748 2.6147 16 6 1.1038 2.1923 3.3974 17 7 1.2348 1.8854 4.6627 18 14 -0.0565 3.5633 2.8841 19 1 0.6437 4.8689 2.9873 20 1 -0.4914 3.3444 1.4812 21 1 -1.2439 3.5666 3.7757 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.2471 1.4991 -2.1186 28 1 3.0742 3.8020 -2.1450 29 1 3.7829 6.7874 1.8225 30 1 0.7296 2.3700 5.3341 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396222388.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:53 Heat of formation + Delta-G solvation = 41.192012 kcal Electronic energy + Delta-G solvation = -16207.522306 eV Core-core repulsion = 13671.915110 eV Total energy + Delta-G solvation = -2535.607196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.37200 -38.15946 -36.44402 -35.32500 -33.48188 -32.19479 -29.37415 -27.32504 -25.60298 -23.92494 -23.03667 -21.33665 -19.84047 -18.15369 -17.96608 -16.95986 -16.29401 -16.03186 -15.37746 -15.26187 -14.89554 -14.57825 -14.24968 -14.13464 -13.98931 -13.82767 -13.66714 -13.10921 -12.99228 -12.81386 -12.57494 -12.34015 -12.02879 -11.67944 -11.51493 -11.41618 -11.21484 -10.95123 -9.88334 -9.17595 -8.86316 -8.40393 -6.37036 -0.25515 0.62955 0.66860 0.89256 1.19652 1.36510 1.42285 1.49415 1.65382 2.17054 2.30833 2.68825 3.12476 3.31117 3.75402 4.26806 4.31635 4.48735 4.60765 4.73857 4.79249 4.82525 4.92757 5.07795 5.17011 5.20073 5.36752 5.50277 5.58057 5.63521 5.83088 5.99972 6.24505 6.37173 6.44354 6.73197 6.83251 8.21363 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.011189 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.258911 B = 2501.842067 C = 3541.164828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.055 4.055 3 C -0.178 4.178 4 C -0.067 4.067 5 C -0.200 4.200 6 C -0.029 4.029 7 C -0.075 4.075 8 C 0.305 3.695 9 N -0.464 5.464 10 C -0.167 4.167 11 S 0.190 5.810 12 C -0.247 4.247 13 C 0.120 3.880 14 C -0.484 4.484 15 H 0.073 0.927 16 C 0.082 3.918 17 N -0.825 5.825 18 Si 0.850 3.150 19 H -0.187 1.187 20 H -0.266 1.266 21 H -0.267 1.267 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.135 0.865 28 H 0.114 0.886 29 H 0.204 0.796 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 2.633 -2.976 4.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 C -0.182 4.182 4 C -0.085 4.085 5 C -0.222 4.222 6 C -0.037 4.037 7 C -0.095 4.095 8 C -0.011 4.011 9 N -0.142 5.142 10 C -0.307 4.307 11 S 0.460 5.540 12 C -0.362 4.362 13 C 0.115 3.885 14 C -0.514 4.514 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.450 5.450 18 Si 0.672 3.328 19 H -0.110 1.110 20 H -0.190 1.190 21 H -0.192 1.192 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.153 0.847 28 H 0.132 0.868 29 H 0.221 0.779 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.241 3.627 -2.354 4.330 hybrid contribution -0.488 0.105 -1.025 1.140 sum -0.729 3.732 -3.378 5.086 Atomic orbital electron populations 1.21611 0.95529 1.01273 1.00884 1.20145 0.95748 0.92064 1.01290 1.20140 1.07825 0.98514 0.91747 1.20766 0.96276 0.93968 0.97530 1.20453 1.10980 0.95766 0.95023 1.18750 0.99816 0.91003 0.94082 1.15678 1.12467 0.92222 0.89178 1.25102 0.91926 0.91876 0.92146 1.81169 1.11922 1.10992 1.10095 1.25352 1.01938 1.06972 0.96436 1.83385 1.61524 1.01272 1.07833 1.23013 1.15908 1.01786 0.95515 1.17056 0.89756 0.88184 0.93517 1.19058 1.33587 1.01111 0.97602 0.90904 1.26167 0.96609 0.97369 0.93460 1.69789 1.34249 1.39074 1.01877 0.87186 0.81320 0.84143 0.80155 1.11017 1.18972 1.19181 0.92851 0.91537 0.94803 0.90646 0.92935 0.84676 0.86807 0.77863 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.89 71.98 0.71 -3.79 16 2 C -0.06 -1.95 5.58 29.85 0.17 -1.78 16 3 C -0.18 -7.22 5.19 -19.43 -0.10 -7.32 16 4 C -0.07 -2.43 9.61 22.11 0.21 -2.21 16 5 C -0.20 -7.54 9.88 22.85 0.23 -7.32 16 6 C -0.03 -1.15 6.03 -20.28 -0.12 -1.27 16 7 C -0.07 -2.57 5.82 -20.90 -0.12 -2.69 16 8 C 0.30 10.33 15.42 88.33 1.36 11.69 16 9 N -0.46 -16.49 18.54 19.00 0.35 -16.14 16 10 C -0.17 -5.06 10.55 66.82 0.71 -4.35 16 11 S 0.19 6.98 17.80 -56.49 -1.01 5.97 16 12 C -0.25 -10.54 4.96 23.47 0.12 -10.43 16 13 C 0.12 5.47 4.62 -21.11 -0.10 5.37 16 14 C -0.48 -23.81 8.22 23.35 0.19 -23.62 16 15 H 0.07 3.89 7.04 -2.91 -0.02 3.87 16 16 C 0.08 3.92 4.59 85.25 0.39 4.31 16 17 N -0.82 -40.47 13.93 21.83 0.30 -40.16 16 18 Si 0.85 35.56 25.03 68.60 1.72 37.28 16 19 H -0.19 -6.92 5.36 98.23 0.53 -6.39 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 24 H 0.03 1.29 7.94 -2.39 -0.02 1.28 16 25 H 0.07 2.22 8.05 -2.39 -0.02 2.20 16 26 H 0.05 2.02 6.70 -2.38 -0.02 2.00 16 27 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 28 H 0.11 3.89 8.06 -2.91 -0.02 3.86 16 29 H 0.20 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 Total: -1.00 -52.86 273.73 6.00 -46.87 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.99 Total: 9.61 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 3.64 Total: -43.42 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.66 Total: -56.30 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 1.72 Total: 37.28 kcal Atomic # 16 Polarization: 6.98 SS G_CDS: -1.01 Total: 5.97 kcal Total: -52.86 6.00 -46.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396222388.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.059 kcal (2) G-P(sol) polarization free energy of solvation -52.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds