Wall clock time and date at job start Mon Mar 30 2020 06:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46963 * 2 1 4 4 C 1.32392 * 122.05047 * 264.71020 * 3 2 1 5 5 S 1.75419 * 110.90658 * 179.89640 * 4 3 2 6 6 C 1.76226 * 91.59960 * 0.31007 * 5 4 3 7 7 C 1.38948 * 129.76791 * 179.79042 * 6 5 4 8 8 C 1.40259 * 120.44342 * 180.02562 * 7 6 5 9 9 C 1.40479 * 120.56279 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00029 * 204.85432 * 9 8 7 11 11 C 1.40128 * 120.00296 * 24.84537 * 9 8 7 12 12 N 1.30744 * 119.99927 * 17.58322 * 11 9 8 13 13 Si 1.86799 * 120.00191 * 197.58108 * 11 9 8 14 14 H 1.48496 * 109.47377 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46947 * 120.00328 * 13 11 9 16 16 H 1.48508 * 109.47038 * 240.00109 * 13 11 9 17 17 C 1.46891 * 118.87221 * 0.02562 * 8 7 6 18 18 C 1.43199 * 120.36627 * 179.97438 * 17 8 7 19 19 N 6.24852 * 90.83961 * 73.02120 * 2 1 3 20 20 C 1.38040 * 119.27308 * 359.97438 * 17 8 7 21 21 C 1.40504 * 109.29445 * 359.82943 * 6 5 4 22 22 H 1.08993 * 109.47070 * 300.00182 * 1 2 3 23 23 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46807 * 60.00501 * 1 2 3 25 25 H 1.09001 * 109.47331 * 120.00038 * 2 1 3 26 26 H 1.08994 * 109.47287 * 240.00323 * 2 1 3 27 27 H 1.08003 * 124.54556 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.77644 * 0.04190 * 7 6 5 29 29 H 0.97001 * 120.00316 * 184.50889 * 12 11 9 30 30 H 1.08000 * 119.62945 * 180.02562 * 20 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3640 2.0488 -1.1173 5 16 2.9054 3.6829 -0.7800 6 6 2.6648 3.4580 0.9512 7 6 2.8809 4.3424 2.0008 8 6 2.6206 3.9534 3.3230 9 6 2.8377 4.8456 4.3861 10 1 3.0300 4.4663 5.3789 11 6 2.8050 6.2279 4.1585 12 7 2.2470 6.6988 3.0740 13 14 3.5586 7.3978 5.4046 14 1 4.1227 6.6194 6.5364 15 1 4.6400 8.1822 4.7562 16 1 2.5125 8.3220 5.9116 17 6 2.1172 2.5970 3.5772 18 6 1.8412 2.1661 4.9146 19 7 1.6216 1.8245 5.9755 20 6 1.9129 1.7424 2.5126 21 6 2.1832 2.1596 1.1882 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 2.3068 1.6140 -2.1043 28 1 3.2516 5.3361 1.7972 29 1 2.2816 7.6495 2.8841 30 1 1.5425 0.7440 2.6929 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396222523.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:07 Heat of formation + Delta-G solvation = 41.373924 kcal Electronic energy + Delta-G solvation = -15763.632697 eV Core-core repulsion = 13228.033389 eV Total energy + Delta-G solvation = -2535.599308 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.64358 -36.28023 -35.12106 -33.64763 -31.45407 -29.82700 -28.94735 -25.76147 -23.88140 -22.22344 -21.71642 -19.16811 -17.97204 -16.76772 -16.47669 -15.44791 -14.73138 -14.11942 -13.79899 -13.55976 -13.13104 -13.04479 -12.66209 -12.52085 -12.22269 -11.98367 -11.83847 -11.56462 -11.46621 -11.41532 -11.16699 -10.94845 -10.61012 -10.32603 -10.01861 -9.94506 -9.69427 -9.35324 -8.58017 -7.58385 -7.23694 -6.85134 -4.76565 1.77463 1.95924 2.56974 2.76301 2.87482 2.94117 2.96855 3.30455 3.62139 3.69437 3.96871 4.32559 5.08585 5.21835 5.33391 5.39635 5.68053 5.74689 5.79778 5.98922 6.12703 6.20261 6.47466 6.48085 6.49032 6.62876 6.80061 6.88866 7.01207 7.34530 7.45134 7.53995 7.64117 8.02502 8.27004 8.36336 8.58100 9.62918 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.007464 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.004507 B = 3750.644647 C = 4851.668460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 C -0.035 4.035 4 C -0.259 4.259 5 S -0.001 6.001 6 C -0.052 4.052 7 C -0.156 4.156 8 C 0.158 3.842 9 C -0.414 4.414 10 H 0.090 0.910 11 C 0.073 3.927 12 N -0.752 5.752 13 Si 0.916 3.084 14 H -0.255 1.255 15 H -0.264 1.264 16 H -0.268 1.268 17 C -0.149 4.149 18 C 0.297 3.703 19 N -0.491 5.491 20 C 0.016 3.984 21 C -0.210 4.210 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.145 0.855 28 H 0.130 0.870 29 H 0.293 0.707 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 -3.172 -6.182 6.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.047 4.047 4 C -0.392 4.392 5 S 0.261 5.739 6 C -0.167 4.167 7 C -0.182 4.182 8 C 0.150 3.850 9 C -0.442 4.442 10 H 0.108 0.892 11 C -0.151 4.151 12 N -0.374 5.374 13 Si 0.738 3.262 14 H -0.178 1.178 15 H -0.189 1.189 16 H -0.193 1.193 17 C -0.155 4.155 18 C -0.014 4.014 19 N -0.169 5.169 20 C -0.007 4.007 21 C -0.215 4.215 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.162 0.838 28 H 0.147 0.853 29 H 0.105 0.895 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.531 -2.346 -5.637 6.129 hybrid contribution -0.138 -0.312 0.735 0.811 sum 0.393 -2.658 -4.902 5.590 Atomic orbital electron populations 1.21712 0.95131 1.00873 1.02450 1.20290 0.95806 0.92724 1.01960 1.18538 0.98481 0.95820 0.91833 1.24302 1.15696 0.98349 1.00825 1.83787 1.74279 1.14034 1.01812 1.22369 1.02215 0.96860 0.95262 1.20478 1.08636 0.99359 0.89752 1.18140 0.86234 0.88232 0.92435 1.19776 1.37178 0.90528 0.96670 0.89184 1.26134 0.92510 0.99636 0.96832 1.69764 1.26767 1.17043 1.23781 0.86094 0.79707 0.79531 0.80852 1.17774 1.18910 1.19286 1.16799 1.16284 0.97745 0.84678 1.25673 0.91650 0.91451 0.92655 1.81048 1.13314 1.10927 1.11629 1.20452 0.93775 0.96470 0.89991 1.17320 1.17163 0.94493 0.92538 0.92252 0.93040 0.92796 0.91302 0.91791 0.83756 0.85265 0.89527 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 37.16 0.37 -1.50 16 2 C -0.07 -0.96 5.88 -27.88 -0.16 -1.12 16 3 C -0.04 -0.62 5.08 -105.61 -0.54 -1.16 16 4 C -0.26 -4.48 10.78 28.81 0.31 -4.17 16 5 S 0.00 -0.02 23.29 -107.50 -2.50 -2.52 16 6 C -0.05 -1.13 6.44 -38.47 -0.25 -1.38 16 7 C -0.16 -3.63 8.71 -38.56 -0.34 -3.97 16 8 C 0.16 3.75 5.72 -104.79 -0.60 3.15 16 9 C -0.41 -9.77 8.55 -38.03 -0.33 -10.09 16 10 H 0.09 2.12 7.38 -52.48 -0.39 1.74 16 11 C 0.07 1.61 5.14 -17.31 -0.09 1.52 16 12 N -0.75 -16.98 10.97 55.56 0.61 -16.37 16 13 Si 0.92 16.66 29.60 -169.99 -5.03 11.63 16 14 H -0.25 -4.71 7.11 56.52 0.40 -4.30 16 15 H -0.26 -4.67 7.11 56.52 0.40 -4.26 16 16 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 17 C -0.15 -3.31 5.91 -104.54 -0.62 -3.93 16 18 C 0.30 6.62 14.27 -22.47 -0.32 6.30 16 19 N -0.49 -11.23 18.54 41.84 0.78 -10.45 16 20 C 0.02 0.33 9.33 -38.43 -0.36 -0.03 16 21 C -0.21 -4.30 5.85 -106.88 -0.63 -4.92 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.94 7.48 -51.93 -0.39 0.55 16 26 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.14 2.11 8.06 -52.48 -0.42 1.68 16 28 H 0.13 3.09 6.16 -52.49 -0.32 2.77 16 29 H 0.29 5.90 8.30 -40.82 -0.34 5.56 16 30 H 0.11 1.86 7.43 -52.49 -0.39 1.47 16 LS Contribution 282.56 15.07 4.26 4.26 Total: -1.00 -24.63 282.56 -8.17 -32.80 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -2.73 Total: 1.96 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.54 Total: -21.30 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 1.38 Total: -26.82 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.63 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.50 Total: -2.52 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -24.63 -8.17 -32.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396222523.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.171 kcal (2) G-P(sol) polarization free energy of solvation -24.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds