Wall clock time and date at job start Mon Mar 30 2020 06:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46963 * 2 1 4 4 C 1.32392 * 122.05047 * 264.71020 * 3 2 1 5 5 S 1.75419 * 110.90658 * 179.89640 * 4 3 2 6 6 C 1.76226 * 91.59960 * 0.31007 * 5 4 3 7 7 C 1.38948 * 129.76791 * 179.79042 * 6 5 4 8 8 C 1.40259 * 120.44342 * 180.02562 * 7 6 5 9 9 C 1.40479 * 120.56279 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00029 * 204.85432 * 9 8 7 11 11 C 1.40128 * 120.00296 * 24.84537 * 9 8 7 12 12 N 1.30744 * 119.99927 * 17.58322 * 11 9 8 13 13 Si 1.86799 * 120.00191 * 197.58108 * 11 9 8 14 14 H 1.48496 * 109.47377 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46947 * 120.00328 * 13 11 9 16 16 H 1.48508 * 109.47038 * 240.00109 * 13 11 9 17 17 C 1.46891 * 118.87221 * 0.02562 * 8 7 6 18 18 C 1.43199 * 120.36627 * 179.97438 * 17 8 7 19 19 N 6.24852 * 90.83961 * 73.02120 * 2 1 3 20 20 C 1.38040 * 119.27308 * 359.97438 * 17 8 7 21 21 C 1.40504 * 109.29445 * 359.82943 * 6 5 4 22 22 H 1.08993 * 109.47070 * 300.00182 * 1 2 3 23 23 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46807 * 60.00501 * 1 2 3 25 25 H 1.09001 * 109.47331 * 120.00038 * 2 1 3 26 26 H 1.08994 * 109.47287 * 240.00323 * 2 1 3 27 27 H 1.08003 * 124.54556 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.77644 * 0.04190 * 7 6 5 29 29 H 0.97001 * 120.00316 * 184.50889 * 12 11 9 30 30 H 1.08000 * 119.62945 * 180.02562 * 20 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3640 2.0488 -1.1173 5 16 2.9054 3.6829 -0.7800 6 6 2.6648 3.4580 0.9512 7 6 2.8809 4.3424 2.0008 8 6 2.6206 3.9534 3.3230 9 6 2.8377 4.8456 4.3861 10 1 3.0300 4.4663 5.3789 11 6 2.8050 6.2279 4.1585 12 7 2.2470 6.6988 3.0740 13 14 3.5586 7.3978 5.4046 14 1 4.1227 6.6194 6.5364 15 1 4.6400 8.1822 4.7562 16 1 2.5125 8.3220 5.9116 17 6 2.1172 2.5970 3.5772 18 6 1.8412 2.1661 4.9146 19 7 1.6216 1.8245 5.9755 20 6 1.9129 1.7424 2.5126 21 6 2.1832 2.1596 1.1882 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 2.3068 1.6140 -2.1043 28 1 3.2516 5.3361 1.7972 29 1 2.2816 7.6495 2.8841 30 1 1.5425 0.7440 2.6929 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396222523.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:06 Heat of formation + Delta-G solvation = 31.685344 kcal Electronic energy + Delta-G solvation = -15764.052825 eV Core-core repulsion = 13228.033389 eV Total energy + Delta-G solvation = -2536.019436 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22699 -37.87902 -36.83364 -35.21016 -32.82830 -31.48503 -30.47050 -27.41839 -25.18927 -23.75675 -23.32294 -20.65875 -19.64645 -18.34796 -18.07468 -17.00084 -16.27470 -15.62763 -15.12665 -14.92682 -14.78587 -14.64083 -14.16218 -14.07103 -13.77834 -13.53636 -13.45900 -13.12005 -12.87472 -12.82033 -12.57707 -12.48775 -11.90260 -11.70812 -11.53267 -11.47335 -11.25864 -10.96797 -10.19606 -9.24094 -8.87465 -8.42113 -6.50271 0.18608 0.28380 0.99933 1.28734 1.36548 1.46640 1.50929 1.76091 1.90707 2.11608 2.26206 2.63278 3.36664 3.49813 4.08557 4.22759 4.28009 4.49093 4.63554 4.80216 4.81084 4.93613 4.97031 5.07186 5.16140 5.21168 5.32785 5.39301 5.49607 5.69921 5.85186 5.92841 5.99395 6.28066 6.55707 6.64521 6.80860 8.02671 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.007464 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.004507 B = 3750.644647 C = 4851.668460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.048 4.048 4 C -0.244 4.244 5 S 0.007 5.993 6 C -0.075 4.075 7 C -0.176 4.176 8 C 0.138 3.862 9 C -0.448 4.448 10 H 0.079 0.921 11 C 0.042 3.958 12 N -0.782 5.782 13 Si 0.980 3.020 14 H -0.262 1.262 15 H -0.253 1.253 16 H -0.262 1.262 17 C -0.166 4.166 18 C 0.305 3.695 19 N -0.505 5.505 20 C 0.023 3.977 21 C -0.211 4.211 22 H 0.040 0.960 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.181 0.819 28 H 0.115 0.885 29 H 0.302 0.698 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 -4.455 -7.722 8.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.059 4.059 4 C -0.376 4.376 5 S 0.268 5.732 6 C -0.190 4.190 7 C -0.202 4.202 8 C 0.130 3.870 9 C -0.476 4.476 10 H 0.097 0.903 11 C -0.179 4.179 12 N -0.404 5.404 13 Si 0.799 3.201 14 H -0.185 1.185 15 H -0.177 1.177 16 H -0.187 1.187 17 C -0.172 4.172 18 C -0.006 4.006 19 N -0.184 5.184 20 C 0.000 4.000 21 C -0.217 4.217 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.198 0.802 28 H 0.133 0.867 29 H 0.114 0.886 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.372 -3.636 -7.192 8.067 hybrid contribution -0.119 -0.026 1.000 1.008 sum 0.253 -3.661 -6.191 7.198 Atomic orbital electron populations 1.21701 0.94324 1.02323 1.01605 1.20378 0.96357 0.90232 1.03523 1.18832 0.98749 0.97736 0.90563 1.24779 1.13630 0.96843 1.02378 1.83777 1.73999 1.15854 0.99536 1.22721 1.02113 0.97429 0.96756 1.20356 1.10223 0.99301 0.90353 1.18385 0.86693 0.89118 0.92849 1.19855 1.39688 0.91775 0.96278 0.90315 1.26820 0.92350 1.00343 0.98406 1.69774 1.27546 1.17914 1.25171 0.85166 0.79143 0.77435 0.78324 1.18532 1.17652 1.18661 1.16925 1.17245 0.97834 0.85157 1.25715 0.91221 0.91028 0.92619 1.81031 1.14055 1.11558 1.11765 1.20714 0.92599 0.97283 0.89415 1.17762 1.15867 0.94272 0.93751 0.94086 0.90490 0.92683 0.90852 0.89193 0.80192 0.86731 0.88630 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.89 71.98 0.71 -2.47 16 2 C -0.07 -1.57 5.88 29.85 0.18 -1.40 16 3 C -0.05 -1.55 5.08 -20.36 -0.10 -1.65 16 4 C -0.24 -7.57 10.78 66.72 0.72 -6.86 16 5 S 0.01 0.24 23.29 -56.49 -1.32 -1.08 16 6 C -0.07 -3.26 6.44 22.99 0.15 -3.11 16 7 C -0.18 -8.48 8.71 22.93 0.20 -8.28 16 8 C 0.14 6.78 5.72 -19.97 -0.11 6.66 16 9 C -0.45 -22.09 8.55 23.28 0.20 -21.89 16 10 H 0.08 3.91 7.38 -2.91 -0.02 3.89 16 11 C 0.04 1.91 5.14 85.31 0.44 2.35 16 12 N -0.78 -36.42 10.97 21.86 0.24 -36.18 16 13 Si 0.98 34.79 29.60 68.60 2.03 36.82 16 14 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 15 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 16 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 17 C -0.17 -7.47 5.91 -19.81 -0.12 -7.58 16 18 C 0.30 13.77 14.27 88.33 1.26 15.03 16 19 N -0.51 -23.28 18.54 19.00 0.35 -22.93 16 20 C 0.02 0.89 9.33 23.02 0.21 1.11 16 21 C -0.21 -8.37 5.85 -21.33 -0.12 -8.49 16 22 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.72 7.48 -2.39 -0.02 1.71 16 26 H 0.09 1.74 8.08 -2.39 -0.02 1.72 16 27 H 0.18 4.31 8.06 -2.91 -0.02 4.28 16 28 H 0.11 5.75 6.16 -2.91 -0.02 5.73 16 29 H 0.30 12.46 8.30 -92.71 -0.77 11.69 16 30 H 0.13 4.44 7.43 -2.91 -0.02 4.42 16 Total: -1.00 -53.75 282.56 6.09 -47.67 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.17 Total: 12.27 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 3.61 Total: -36.57 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.59 Total: -59.11 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.32 Total: -1.08 kcal Total: -53.75 6.09 -47.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396222523.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.354 kcal (2) G-P(sol) polarization free energy of solvation -53.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds