Wall clock time and date at job start Mon Mar 30 2020 06:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46957 * 2 1 4 4 C 1.35717 * 119.56400 * 264.97276 * 3 2 1 5 5 C 1.41078 * 120.04295 * 180.02562 * 4 3 2 6 6 C 1.41246 * 120.10690 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00115 * 334.53426 * 6 5 4 8 8 C 1.39875 * 120.00378 * 154.53722 * 6 5 4 9 9 N 1.30889 * 119.99952 * 342.44580 * 8 6 5 10 10 Si 1.86802 * 120.00204 * 162.44406 * 8 6 5 11 11 H 1.48498 * 109.47229 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46892 * 120.00398 * 10 8 6 13 13 H 1.48497 * 109.47364 * 239.99851 * 10 8 6 14 14 C 1.40025 * 119.78830 * 359.97438 * 5 4 3 15 15 C 1.40175 * 120.04965 * 0.02562 * 14 5 4 16 16 C 1.46504 * 128.96422 * 180.02562 * 15 14 5 17 17 C 1.43193 * 122.86445 * 359.95648 * 16 15 14 18 18 N 7.34098 * 105.49914 * 25.99219 * 2 1 3 19 19 C 1.33817 * 114.26604 * 179.97438 * 16 15 14 20 20 S 1.75196 * 111.35069 * 0.02562 * 19 16 15 21 21 C 1.39879 * 119.15665 * 359.97438 * 15 14 5 22 22 H 1.09006 * 109.46911 * 300.00027 * 1 2 3 23 23 H 1.09003 * 109.47115 * 59.99896 * 1 2 3 24 24 H 1.09001 * 109.47176 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.46955 * 239.99758 * 2 1 3 26 26 H 1.09004 * 109.47166 * 119.99559 * 2 1 3 27 27 H 1.08003 * 119.97617 * 0.03177 * 4 3 2 28 28 H 0.97001 * 119.99831 * 180.02562 * 9 8 6 29 29 H 1.08006 * 119.97622 * 180.27687 * 14 5 4 30 30 H 1.08001 * 124.32416 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3530 2.0177 -1.1759 5 6 2.8247 3.3472 -1.1876 6 6 3.1584 3.9699 -2.4107 7 1 3.4529 3.3702 -3.2593 8 6 3.1074 5.3632 -2.5231 9 7 2.4395 6.0666 -1.6443 10 14 3.9927 6.2201 -3.9272 11 1 4.6687 5.2075 -4.7775 12 1 3.0094 6.9754 -4.7446 13 1 5.0029 7.1585 -3.3761 14 6 2.9600 4.0479 0.0171 15 6 2.6280 3.4291 1.2302 16 6 2.6926 3.9720 2.5894 17 6 3.1370 5.3031 2.8741 18 7 3.4917 6.3585 3.1002 19 6 2.3013 3.1176 3.5421 20 16 1.8214 1.5772 2.8594 21 6 2.1624 2.1101 1.2174 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 2.2469 1.4744 -2.1034 28 1 2.4038 7.0328 -1.7224 29 1 3.3166 5.0674 0.0113 30 1 2.2835 3.3483 4.5970 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396223076.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:44 Heat of formation + Delta-G solvation = 34.057787 kcal Electronic energy + Delta-G solvation = -15827.656300 eV Core-core repulsion = 13291.739740 eV Total energy + Delta-G solvation = -2535.916560 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.21838 -38.03832 -36.24985 -35.93780 -33.60265 -30.80257 -29.73992 -27.45652 -25.34193 -24.30659 -22.45697 -22.06418 -18.81776 -18.31919 -18.01735 -16.86477 -16.21354 -16.04482 -15.31966 -15.18237 -14.74609 -14.53700 -14.26016 -14.12066 -14.02667 -13.42078 -13.15853 -13.06327 -12.88920 -12.87360 -12.63089 -12.32426 -11.97549 -11.81250 -11.65713 -11.53640 -11.18376 -10.94475 -9.97064 -9.24807 -8.69387 -8.39537 -6.35148 -0.19457 0.75699 0.78139 1.13413 1.16679 1.34903 1.41740 1.50193 1.65024 2.15643 2.34619 2.69213 3.20260 3.60513 3.85177 4.11024 4.29680 4.59025 4.64149 4.67753 4.86191 4.94848 4.99277 5.07061 5.14691 5.19583 5.38781 5.47837 5.55359 5.74113 5.84706 6.02787 6.21902 6.45502 6.60619 6.86271 6.92925 8.26135 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.008488 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.685925 B = 3298.052467 C = 4696.267499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.024 4.024 4 C -0.188 4.188 5 C 0.088 3.912 6 C -0.487 4.487 7 H 0.086 0.914 8 C 0.033 3.967 9 N -0.822 5.822 10 Si 0.977 3.023 11 H -0.249 1.249 12 H -0.265 1.265 13 H -0.273 1.273 14 C -0.189 4.189 15 C -0.037 4.037 16 C -0.073 4.073 17 C 0.297 3.703 18 N -0.471 5.471 19 C -0.117 4.117 20 S 0.161 5.839 21 C -0.253 4.253 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.284 0.716 29 H 0.090 0.910 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 -10.407 5.188 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.027 4.027 4 C -0.209 4.209 5 C 0.085 3.915 6 C -0.516 4.516 7 H 0.104 0.896 8 C -0.182 4.182 9 N -0.448 5.448 10 Si 0.798 3.202 11 H -0.172 1.172 12 H -0.190 1.190 13 H -0.199 1.199 14 C -0.212 4.212 15 C -0.044 4.044 16 C -0.092 4.092 17 C -0.019 4.019 18 N -0.149 5.149 19 C -0.256 4.256 20 S 0.425 5.575 21 C -0.367 4.367 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.134 0.866 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.688 -9.922 6.237 12.024 hybrid contribution 0.819 2.137 -1.533 2.755 sum -1.869 -7.785 4.703 9.286 Atomic orbital electron populations 1.21696 0.94006 1.02475 1.01640 1.20596 0.96877 0.91095 1.03181 1.18943 0.97624 0.96117 0.90066 1.20858 1.06754 0.96325 0.96927 1.17722 0.88677 0.92107 0.92985 1.19860 1.41357 0.92309 0.98105 0.89630 1.26774 0.93332 0.98410 0.99718 1.69929 1.30851 1.08622 1.35392 0.85230 0.78675 0.78464 0.77882 1.17233 1.18996 1.19869 1.20876 1.09655 1.00116 0.90523 1.18832 1.00707 0.93466 0.91376 1.15935 1.11565 0.88155 0.93556 1.25456 0.92075 0.92410 0.91911 1.81113 1.11777 1.12034 1.09956 1.25851 0.99109 0.97058 1.03547 1.83037 1.68920 1.10753 0.94815 1.22034 1.18978 0.97659 0.98077 0.93022 0.93725 0.90077 0.90240 0.90387 0.86642 0.90515 0.89208 0.77542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.89 71.98 0.71 -2.82 16 2 C -0.08 -2.25 5.85 29.85 0.17 -2.08 16 3 C -0.02 -0.91 5.12 -19.90 -0.10 -1.01 16 4 C -0.19 -8.35 9.30 22.38 0.21 -8.14 16 5 C 0.09 4.60 5.55 -21.41 -0.12 4.48 16 6 C -0.49 -25.47 9.03 23.41 0.21 -25.25 16 7 H 0.09 4.22 7.90 -2.91 -0.02 4.20 16 8 C 0.03 1.67 5.13 85.23 0.44 2.10 16 9 N -0.82 -44.43 10.99 21.82 0.24 -44.19 16 10 Si 0.98 38.73 29.59 68.60 2.03 40.76 16 11 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 12 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 13 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 14 C -0.19 -9.98 8.48 23.17 0.20 -9.78 16 15 C -0.04 -1.68 6.00 -20.26 -0.12 -1.80 16 16 C -0.07 -2.79 5.82 -20.88 -0.12 -2.91 16 17 C 0.30 12.24 15.35 88.33 1.36 13.60 16 18 N -0.47 -20.61 18.54 19.00 0.35 -20.25 16 19 C -0.12 -3.27 10.83 66.81 0.72 -2.55 16 20 S 0.16 4.41 22.57 -56.49 -1.27 3.14 16 21 C -0.25 -9.84 6.31 23.22 0.15 -9.69 16 22 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 2.05 8.01 -2.39 -0.02 2.03 16 26 H 0.08 1.93 7.73 -2.38 -0.02 1.92 16 27 H 0.12 4.71 8.03 -2.91 -0.02 4.69 16 28 H 0.28 14.22 8.30 -92.71 -0.77 13.46 16 29 H 0.09 5.23 6.14 -2.91 -0.02 5.21 16 30 H 0.21 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -61.35 284.28 6.22 -55.14 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 1.17 Total: 11.26 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 3.70 Total: -45.86 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 0.59 Total: -64.44 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.27 Total: 3.14 kcal Total: -61.35 6.22 -55.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223076.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.195 kcal (2) G-P(sol) polarization free energy of solvation -61.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds