Wall clock time and date at job start Mon Mar 30 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.38946 * 119.71848 * 266.41746 * 3 2 1 5 5 C 1.39564 * 121.66944 * 179.97438 * 4 3 2 6 6 S 1.76171 * 130.23143 * 179.97438 * 5 4 3 7 7 C 1.75487 * 91.51543 * 180.02562 * 6 5 4 8 8 C 1.32964 * 110.67648 * 0.02562 * 7 6 5 9 9 C 1.39708 * 115.86978 * 359.97438 * 8 7 6 10 10 C 1.47942 * 128.85843 * 179.97438 * 9 8 7 11 11 C 1.39774 * 120.38709 * 0.02562 * 10 9 8 12 12 H 1.08004 * 119.99909 * 139.93575 * 11 10 9 13 13 C 1.40536 * 120.00151 * 319.94144 * 11 10 9 14 14 N 1.30504 * 119.99594 * 340.18016 * 13 11 10 15 15 Si 1.86799 * 120.00174 * 160.18873 * 13 11 10 16 16 H 1.48498 * 109.47244 * 89.99551 * 15 13 11 17 17 H 1.48507 * 109.46873 * 209.99765 * 15 13 11 18 18 H 1.48501 * 109.47134 * 329.99412 * 15 13 11 19 19 C 1.41022 * 119.71587 * 86.41802 * 3 2 1 20 20 C 1.41807 * 120.21403 * 0.02562 * 19 3 2 21 21 O 1.21413 * 120.00176 * 355.42132 * 20 19 3 22 22 H 1.07994 * 119.16264 * 0.02562 * 4 3 2 23 23 H 1.08001 * 124.66363 * 179.73541 * 7 6 5 24 24 H 1.08003 * 122.06625 * 179.97438 * 8 7 6 25 25 H 0.97009 * 120.00160 * 178.21920 * 14 13 11 26 26 H 1.08002 * 120.00263 * 175.41540 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2567 0.0764 1.2043 5 6 4.6515 0.0794 1.2518 6 16 5.7429 0.1668 2.6320 7 6 7.1488 0.1013 1.5837 8 6 6.7803 0.0214 0.3086 9 6 5.4036 0.0058 0.0718 10 6 4.6846 -0.0747 -1.2187 11 6 5.3948 -0.1494 -2.4202 12 1 5.0528 -0.8019 -3.2100 13 6 6.5540 0.6244 -2.6006 14 7 6.7622 1.6722 -1.8510 15 14 7.7965 0.1533 -3.9135 16 1 7.4478 0.8275 -5.1898 17 1 9.1540 0.5765 -3.4848 18 1 7.7757 -1.3185 -4.1094 19 6 3.2670 -0.0756 -1.2224 20 6 2.5565 -0.1520 -2.4472 21 8 1.3453 -0.2359 -2.4423 22 1 2.6986 0.1335 2.1271 23 1 8.1725 0.1274 1.9267 24 1 7.5009 -0.0284 -0.4944 25 1 7.5746 2.1914 -1.9580 26 1 3.0928 -0.1355 -3.3846 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396223355.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:31 Heat of formation + Delta-G solvation = 18.885561 kcal Electronic energy + Delta-G solvation = -15811.580521 eV Core-core repulsion = 13139.172950 eV Total energy + Delta-G solvation = -2672.407571 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72115 -39.04219 -37.51240 -35.88880 -35.53339 -32.48989 -30.47588 -27.63418 -26.00813 -23.99769 -22.85391 -21.18108 -20.11545 -18.30389 -17.69838 -17.39665 -16.94349 -16.51798 -15.47532 -15.34175 -14.82460 -14.60976 -14.38045 -14.29377 -14.07571 -13.78461 -13.59689 -13.37446 -13.14530 -12.90814 -12.68114 -12.19958 -11.90702 -11.62964 -11.51157 -10.97231 -10.32695 -10.07028 -9.18208 -9.02479 -8.45005 -6.67040 -0.50944 0.36772 0.80578 1.13224 1.26051 1.47468 1.51331 1.62613 1.87513 2.02907 2.18359 2.32154 2.66690 3.14886 3.43152 3.99971 4.13327 4.31873 4.63363 4.79707 4.85097 4.97976 5.05913 5.22261 5.26039 5.58255 5.66193 5.75037 5.83720 6.17737 6.46404 6.56200 6.64725 7.02266 8.01777 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.010973 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.903970 B = 2551.051753 C = 4173.671074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.286 3.714 3 C 0.066 3.934 4 C -0.154 4.154 5 C -0.118 4.118 6 S 0.099 5.901 7 C -0.234 4.234 8 C -0.074 4.074 9 C -0.110 4.110 10 C 0.183 3.817 11 C -0.440 4.440 12 H 0.113 0.887 13 C 0.053 3.947 14 N -0.761 5.761 15 Si 0.975 3.025 16 H -0.262 1.262 17 H -0.260 1.260 18 H -0.251 1.251 19 C -0.330 4.330 20 C 0.382 3.618 21 O -0.558 6.558 22 H 0.128 0.872 23 H 0.187 0.813 24 H 0.134 0.866 25 H 0.307 0.693 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.726 -1.243 2.469 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.028 4.028 3 C 0.060 3.940 4 C -0.180 4.180 5 C -0.234 4.234 6 S 0.363 5.637 7 C -0.368 4.368 8 C -0.103 4.103 9 C -0.120 4.120 10 C 0.177 3.823 11 C -0.465 4.465 12 H 0.131 0.869 13 C -0.173 4.173 14 N -0.382 5.382 15 Si 0.794 3.206 16 H -0.187 1.187 17 H -0.184 1.184 18 H -0.175 1.175 19 C -0.337 4.337 20 C 0.255 3.745 21 O -0.444 6.444 22 H 0.146 0.854 23 H 0.205 0.795 24 H 0.152 0.848 25 H 0.119 0.881 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.436 -0.944 4.110 9.431 hybrid contribution 0.983 0.024 -1.987 2.217 sum 9.419 -0.920 2.123 9.699 Atomic orbital electron populations 1.80938 1.13094 1.09539 1.11058 1.25901 0.93079 0.92958 0.90826 1.15775 0.82723 1.00870 0.94652 1.19631 0.91147 1.11529 0.95709 1.22688 0.97155 1.06359 0.97228 1.83435 0.95762 1.77058 1.07444 1.25450 1.02562 1.13171 0.95642 1.19847 0.94609 0.99312 0.96576 1.19676 0.93045 1.06863 0.92465 1.18504 0.89007 0.83148 0.91653 1.20025 1.06698 1.19664 1.00118 0.86918 1.26809 0.98786 0.92626 0.99031 1.69698 1.25496 1.09538 1.33421 0.85271 0.76858 0.80685 0.77800 1.18697 1.18414 1.17454 1.19283 0.94235 1.26788 0.93345 1.22514 0.87928 0.69974 0.94103 1.90454 1.18980 1.43791 1.91174 0.85410 0.79540 0.84840 0.88058 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -22.61 18.37 19.00 0.35 -22.26 15 2 C 0.29 13.30 12.60 88.33 1.11 14.41 15 3 C 0.07 2.95 5.75 -21.18 -0.12 2.83 15 4 C -0.15 -6.18 9.67 22.76 0.22 -5.96 15 5 C -0.12 -4.61 6.48 23.05 0.15 -4.46 15 6 S 0.10 3.06 23.30 -56.49 -1.32 1.75 15 7 C -0.23 -7.11 11.12 66.65 0.74 -6.37 15 8 C -0.07 -2.70 8.24 21.45 0.18 -2.52 15 9 C -0.11 -4.57 5.52 -19.89 -0.11 -4.68 15 10 C 0.18 7.98 5.51 -19.46 -0.11 7.88 15 11 C -0.44 -17.69 7.82 23.20 0.18 -17.50 15 12 H 0.11 4.19 7.20 -2.91 -0.02 4.17 15 13 C 0.05 1.94 3.83 85.45 0.33 2.26 15 14 N -0.76 -29.58 10.84 21.93 0.24 -29.34 15 15 Si 0.97 27.59 29.61 68.60 2.03 29.62 15 16 H -0.26 -7.50 7.11 99.48 0.71 -6.79 15 17 H -0.26 -6.98 7.11 99.48 0.71 -6.28 15 18 H -0.25 -7.07 7.11 99.48 0.71 -6.37 15 19 C -0.33 -14.91 5.80 -20.84 -0.12 -15.03 15 20 C 0.38 17.00 10.71 68.70 0.74 17.74 15 21 O -0.56 -28.14 14.92 -3.44 -0.05 -28.19 15 22 H 0.13 4.50 8.06 -2.91 -0.02 4.48 15 23 H 0.19 4.27 8.06 -2.91 -0.02 4.25 15 24 H 0.13 4.73 6.06 -2.91 -0.02 4.72 15 25 H 0.31 10.53 8.29 -92.70 -0.77 9.76 15 26 H 0.11 4.16 6.75 -2.91 -0.02 4.14 15 Total: -1.00 -53.42 255.82 5.68 -47.74 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.25 Total: 12.08 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 3.19 Total: -11.40 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.59 Total: -51.60 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.05 Total: -28.19 kcal Atomic # 14 Polarization: 27.59 SS G_CDS: 2.03 Total: 29.62 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.32 Total: 1.75 kcal Total: -53.42 5.68 -47.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223355.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.625 kcal (2) G-P(sol) polarization free energy of solvation -53.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds