Wall clock time and date at job start Mon Mar 30 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.35546 * 123.12706 * 269.35813 * 3 2 1 5 5 S 1.69998 * 111.97348 * 180.02562 * 4 3 2 6 6 C 1.75999 * 93.07423 * 359.97438 * 5 4 3 7 7 C 1.40123 * 129.91921 * 180.02562 * 6 5 4 8 8 C 1.37224 * 122.51701 * 179.97438 * 7 6 5 9 9 C 1.39788 * 120.98977 * 359.97438 * 8 7 6 10 10 C 1.46293 * 120.55486 * 179.72684 * 9 8 7 11 11 O 1.21392 * 120.00068 * 174.74713 * 10 9 8 12 12 C 1.46522 * 118.89162 * 0.02562 * 9 8 7 13 13 C 1.39913 * 120.77412 * 179.97438 * 12 9 8 14 14 H 1.08000 * 120.00071 * 304.45173 * 13 12 9 15 15 C 1.40484 * 119.99611 * 124.44203 * 13 12 9 16 16 N 1.30534 * 120.00568 * 349.91234 * 15 13 12 17 17 Si 1.86803 * 119.99407 * 169.90875 * 15 13 12 18 18 H 1.48506 * 109.46888 * 90.00570 * 17 15 13 19 19 H 1.48503 * 109.47014 * 210.00080 * 17 15 13 20 20 H 1.48494 * 109.47449 * 330.00314 * 17 15 13 21 21 C 1.39512 * 109.74076 * 0.02562 * 6 5 4 22 22 H 1.07994 * 124.01302 * 0.03057 * 4 3 2 23 23 H 1.08008 * 118.73729 * 359.95088 * 7 6 5 24 24 H 1.08003 * 119.50282 * 180.02562 * 8 7 6 25 25 H 1.08001 * 120.00440 * 354.74128 * 10 9 8 26 26 H 0.97000 * 120.00466 * 175.16459 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3087 0.0137 1.1351 5 16 4.9766 0.0115 0.8062 6 6 4.7292 -0.0086 -0.9362 7 6 5.6669 -0.0201 -1.9774 8 6 5.3006 -0.0360 -3.2998 9 6 3.9536 -0.0420 -3.6735 10 6 3.5738 -0.0529 -5.0862 11 8 2.4055 -0.1543 -5.3999 12 6 2.9284 -0.0305 -2.6267 13 6 1.5687 -0.0354 -2.9563 14 1 1.1679 0.7279 -3.6067 15 6 0.7248 -1.0335 -2.4412 16 7 1.2342 -2.0629 -1.8210 17 14 -1.1265 -0.8873 -2.6439 18 1 -1.5388 -1.5414 -3.9117 19 1 -1.8035 -1.5516 -1.5012 20 1 -1.5088 0.5472 -2.6798 21 6 3.3629 -0.0125 -1.2181 22 1 2.8892 0.0242 2.1301 23 1 6.7181 -0.0160 -1.7296 24 1 6.0645 -0.0448 -4.0632 25 1 4.3328 0.0294 -5.8501 26 1 0.6503 -2.7160 -1.4044 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396223954.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:15 Heat of formation + Delta-G solvation = 38.103803 kcal Electronic energy + Delta-G solvation = -16122.852023 eV Core-core repulsion = 13451.277818 eV Total energy + Delta-G solvation = -2671.574206 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.54552 -37.26756 -35.77603 -34.07683 -33.53495 -30.09420 -28.98244 -25.78860 -24.21808 -22.83171 -21.43849 -19.47669 -18.15829 -16.78511 -16.28896 -15.40157 -14.97033 -14.72452 -14.26150 -13.51962 -13.37443 -12.97723 -12.90950 -12.54810 -12.41303 -12.19549 -11.89706 -11.67555 -11.44697 -11.07487 -10.83164 -10.48271 -10.36665 -10.11269 -9.86206 -9.28644 -8.49858 -8.19724 -7.71191 -7.11049 -6.73251 -4.72889 1.29411 1.85045 2.14604 2.55331 2.68234 2.98292 3.15483 3.18878 3.47733 3.69201 3.94436 4.30302 4.42150 4.98337 5.04846 5.22041 5.51815 5.74134 6.02324 6.13797 6.38598 6.51652 6.65791 6.84531 6.89371 7.12827 7.33915 7.47314 7.64476 8.14153 8.31411 8.38261 8.49245 8.79188 9.90074 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.012666 C = 0.007841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.551893 B = 2210.069355 C = 3570.091105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.313 3.687 3 C 0.029 3.971 4 C -0.244 4.244 5 S 0.130 5.870 6 C -0.087 4.087 7 C -0.218 4.218 8 C -0.007 4.007 9 C -0.309 4.309 10 C 0.374 3.626 11 O -0.475 6.475 12 C 0.211 3.789 13 C -0.412 4.412 14 H 0.099 0.901 15 C 0.081 3.919 16 N -0.776 5.776 17 Si 0.920 3.080 18 H -0.274 1.274 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.103 4.103 22 H 0.161 0.839 23 H 0.102 0.898 24 H 0.110 0.890 25 H 0.067 0.933 26 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 2.264 3.289 8.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.002 4.002 3 C 0.012 3.988 4 C -0.383 4.383 5 S 0.397 5.603 6 C -0.203 4.203 7 C -0.242 4.242 8 C -0.029 4.029 9 C -0.314 4.314 10 C 0.237 3.763 11 O -0.353 6.353 12 C 0.205 3.795 13 C -0.439 4.439 14 H 0.116 0.884 15 C -0.140 4.140 16 N -0.400 5.400 17 Si 0.744 3.256 18 H -0.200 1.200 19 H -0.193 1.193 20 H -0.183 1.183 21 C -0.110 4.110 22 H 0.179 0.821 23 H 0.121 0.879 24 H 0.128 0.872 25 H 0.083 0.917 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.284 1.967 4.207 7.814 hybrid contribution -1.461 -0.238 -0.747 1.657 sum 4.824 1.729 3.461 6.183 Atomic orbital electron populations 1.80773 1.12300 1.10173 1.09916 1.24788 0.91940 0.92286 0.91145 1.15857 0.85233 1.05234 0.92516 1.24635 0.98990 1.13366 1.01285 1.82351 1.01996 1.76003 0.99956 1.22505 0.96528 1.05344 0.95884 1.19407 0.96251 1.17542 0.90958 1.20621 0.94650 0.92965 0.94613 1.21466 0.92640 1.22207 0.95078 1.23081 0.90437 0.72907 0.89867 1.90504 1.22695 1.37164 1.84898 1.19290 0.92398 0.81329 0.86494 1.19523 0.92117 1.08948 1.23349 0.88354 1.26048 1.02035 0.93834 0.92112 1.69624 1.39030 1.07427 1.23907 0.86067 0.81079 0.80440 0.78003 1.20045 1.19286 1.18258 1.19992 0.89401 1.08789 0.92867 0.82146 0.87941 0.87250 0.91657 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.71 14.86 41.83 0.62 -10.08 15 2 C 0.31 7.14 11.43 -22.48 -0.26 6.89 15 3 C 0.03 0.63 5.54 -106.06 -0.59 0.04 15 4 C -0.24 -4.25 10.65 29.77 0.32 -3.93 15 5 S 0.13 2.07 22.98 -107.50 -2.47 -0.40 15 6 C -0.09 -1.73 6.46 -38.40 -0.25 -1.98 15 7 C -0.22 -4.01 9.94 -39.24 -0.39 -4.40 15 8 C -0.01 -0.13 9.71 -39.37 -0.38 -0.51 15 9 C -0.31 -6.78 6.05 -102.74 -0.62 -7.40 15 10 C 0.37 7.73 11.41 33.97 0.39 8.12 15 11 O -0.48 -11.72 15.15 5.46 0.08 -11.64 15 12 C 0.21 5.22 5.41 -102.20 -0.55 4.67 15 13 C -0.41 -10.79 6.27 -38.11 -0.24 -11.03 15 14 H 0.10 2.65 7.27 -52.49 -0.38 2.27 15 15 C 0.08 2.08 2.97 -17.26 -0.05 2.03 15 16 N -0.78 -20.08 11.30 55.58 0.63 -19.45 15 17 Si 0.92 21.74 26.79 -169.99 -4.55 17.19 15 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 20 H -0.26 -6.15 7.11 56.52 0.40 -5.74 15 21 C -0.10 -2.34 5.68 -102.81 -0.58 -2.93 15 22 H 0.16 2.31 8.06 -52.49 -0.42 1.89 15 23 H 0.10 1.59 8.06 -52.48 -0.42 1.17 15 24 H 0.11 1.58 8.06 -52.48 -0.42 1.16 15 25 H 0.07 1.05 8.06 -52.49 -0.42 0.63 15 26 H 0.29 7.09 8.30 -40.82 -0.34 6.75 15 LS Contribution 251.72 15.07 3.79 3.79 Total: -1.00 -28.47 251.72 -6.31 -34.79 By element: Atomic # 1 Polarization: -2.55 SS G_CDS: -1.21 Total: -3.76 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -3.21 Total: -10.44 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 1.25 Total: -29.53 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.55 Total: 17.19 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.47 Total: -0.40 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.47 -6.31 -34.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223954.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.889 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds