Wall clock time and date at job start Mon Mar 30 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.35546 * 123.12706 * 269.35813 * 3 2 1 5 5 S 1.69998 * 111.97348 * 180.02562 * 4 3 2 6 6 C 1.75999 * 93.07423 * 359.97438 * 5 4 3 7 7 C 1.40123 * 129.91921 * 180.02562 * 6 5 4 8 8 C 1.37224 * 122.51701 * 179.97438 * 7 6 5 9 9 C 1.39788 * 120.98977 * 359.97438 * 8 7 6 10 10 C 1.46293 * 120.55486 * 179.72684 * 9 8 7 11 11 O 1.21392 * 120.00068 * 174.74713 * 10 9 8 12 12 C 1.46522 * 118.89162 * 0.02562 * 9 8 7 13 13 C 1.39913 * 120.77412 * 179.97438 * 12 9 8 14 14 H 1.08000 * 120.00071 * 304.45173 * 13 12 9 15 15 C 1.40484 * 119.99611 * 124.44203 * 13 12 9 16 16 N 1.30534 * 120.00568 * 349.91234 * 15 13 12 17 17 Si 1.86803 * 119.99407 * 169.90875 * 15 13 12 18 18 H 1.48506 * 109.46888 * 90.00570 * 17 15 13 19 19 H 1.48503 * 109.47014 * 210.00080 * 17 15 13 20 20 H 1.48494 * 109.47449 * 330.00314 * 17 15 13 21 21 C 1.39512 * 109.74076 * 0.02562 * 6 5 4 22 22 H 1.07994 * 124.01302 * 0.03057 * 4 3 2 23 23 H 1.08008 * 118.73729 * 359.95088 * 7 6 5 24 24 H 1.08003 * 119.50282 * 180.02562 * 8 7 6 25 25 H 1.08001 * 120.00440 * 354.74128 * 10 9 8 26 26 H 0.97000 * 120.00466 * 175.16459 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3087 0.0137 1.1351 5 16 4.9766 0.0115 0.8062 6 6 4.7292 -0.0086 -0.9362 7 6 5.6669 -0.0201 -1.9774 8 6 5.3006 -0.0360 -3.2998 9 6 3.9536 -0.0420 -3.6735 10 6 3.5738 -0.0529 -5.0862 11 8 2.4055 -0.1543 -5.3999 12 6 2.9284 -0.0305 -2.6267 13 6 1.5687 -0.0354 -2.9563 14 1 1.1679 0.7279 -3.6067 15 6 0.7248 -1.0335 -2.4412 16 7 1.2342 -2.0629 -1.8210 17 14 -1.1265 -0.8873 -2.6439 18 1 -1.5388 -1.5414 -3.9117 19 1 -1.8035 -1.5516 -1.5012 20 1 -1.5088 0.5472 -2.6798 21 6 3.3629 -0.0125 -1.2181 22 1 2.8892 0.0242 2.1301 23 1 6.7181 -0.0160 -1.7296 24 1 6.0645 -0.0448 -4.0632 25 1 4.3328 0.0294 -5.8501 26 1 0.6503 -2.7160 -1.4044 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396223954.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:14 Heat of formation + Delta-G solvation = 20.979524 kcal Electronic energy + Delta-G solvation = -16123.594588 eV Core-core repulsion = 13451.277818 eV Total energy + Delta-G solvation = -2672.316770 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15320 -38.95049 -37.43908 -35.76102 -35.17769 -31.76002 -30.55793 -27.46178 -25.76589 -24.47463 -23.03283 -21.07280 -19.82391 -18.34002 -17.86773 -17.10827 -16.65738 -16.35819 -15.77477 -15.17873 -15.00578 -14.72372 -14.67351 -14.22802 -14.05297 -13.80755 -13.55800 -13.38961 -12.96250 -12.82547 -12.56635 -12.28991 -11.91649 -11.62997 -11.49674 -11.09961 -10.16352 -9.76304 -9.20910 -8.91304 -8.24989 -6.54499 -0.18809 0.15966 0.74427 1.03202 1.07562 1.15127 1.24533 1.26925 1.87763 1.92698 2.11332 2.61413 2.64577 3.36563 3.46258 3.75058 4.10285 4.36196 4.59201 4.66129 4.83887 5.00079 5.08008 5.14938 5.29950 5.55013 5.81152 5.81717 6.11982 6.28835 6.60200 6.69101 6.74783 7.19971 8.09808 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.012666 C = 0.007841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.551893 B = 2210.069355 C = 3570.091105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.321 3.679 3 C -0.023 4.023 4 C -0.216 4.216 5 S 0.239 5.761 6 C -0.121 4.121 7 C -0.197 4.197 8 C -0.010 4.010 9 C -0.326 4.326 10 C 0.374 3.626 11 O -0.522 6.522 12 C 0.182 3.818 13 C -0.454 4.454 14 H 0.068 0.932 15 C 0.067 3.933 16 N -0.808 5.808 17 Si 0.941 3.059 18 H -0.274 1.274 19 H -0.268 1.268 20 H -0.271 1.271 21 C -0.126 4.126 22 H 0.194 0.806 23 H 0.145 0.855 24 H 0.160 0.840 25 H 0.131 0.869 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.817 2.533 4.564 12.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C 0.007 3.993 3 C -0.041 4.041 4 C -0.356 4.356 5 S 0.507 5.493 6 C -0.237 4.237 7 C -0.220 4.220 8 C -0.031 4.031 9 C -0.330 4.330 10 C 0.240 3.760 11 O -0.402 6.402 12 C 0.177 3.823 13 C -0.483 4.483 14 H 0.086 0.914 15 C -0.150 4.150 16 N -0.435 5.435 17 Si 0.766 3.234 18 H -0.200 1.200 19 H -0.193 1.193 20 H -0.195 1.195 21 C -0.133 4.133 22 H 0.212 0.788 23 H 0.162 0.838 24 H 0.177 0.823 25 H 0.147 0.853 26 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.675 2.245 5.481 12.208 hybrid contribution -2.386 -0.196 -1.025 2.604 sum 8.289 2.048 4.456 9.631 Atomic orbital electron populations 1.80719 1.13276 1.12049 1.10906 1.25211 0.92534 0.91267 0.90257 1.16048 0.84674 1.09807 0.93619 1.25302 1.00635 1.07847 1.01768 1.82017 0.98838 1.73156 0.95249 1.23056 0.95748 1.05383 0.99528 1.20045 0.98003 1.13377 0.90612 1.21098 0.93944 0.91855 0.96244 1.22015 0.94086 1.21447 0.95475 1.23973 0.90687 0.70605 0.90774 1.90507 1.25213 1.38997 1.85475 1.19736 0.92566 0.81369 0.88600 1.19223 0.93728 1.10043 1.25318 0.91424 1.26129 1.02730 0.93776 0.92327 1.69628 1.38707 1.08252 1.26903 0.85772 0.80491 0.79426 0.77693 1.20028 1.19326 1.19519 1.20160 0.91207 1.09429 0.92534 0.78841 0.83771 0.82272 0.85285 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -24.21 14.86 19.00 0.28 -23.92 15 2 C 0.32 15.07 11.43 88.33 1.01 16.08 15 3 C -0.02 -0.98 5.54 -20.79 -0.12 -1.10 15 4 C -0.22 -6.77 10.65 67.20 0.72 -6.05 15 5 S 0.24 6.33 22.98 -56.49 -1.30 5.04 15 6 C -0.12 -4.37 6.46 23.04 0.15 -4.22 15 7 C -0.20 -6.21 9.94 22.49 0.22 -5.99 15 8 C -0.01 -0.33 9.71 22.41 0.22 -0.12 15 9 C -0.33 -13.84 6.05 -18.65 -0.11 -13.96 15 10 C 0.37 15.03 11.41 69.92 0.80 15.82 15 11 O -0.52 -26.49 15.15 -3.38 -0.05 -26.54 15 12 C 0.18 9.19 5.41 -18.29 -0.10 9.09 15 13 C -0.45 -25.24 6.27 23.22 0.15 -25.09 15 14 H 0.07 4.00 7.27 -2.91 -0.02 3.98 15 15 C 0.07 3.65 2.97 85.43 0.25 3.90 15 16 N -0.81 -43.90 11.30 21.92 0.25 -43.65 15 17 Si 0.94 47.28 26.79 68.60 1.84 49.11 15 18 H -0.27 -13.42 7.11 99.48 0.71 -12.71 15 19 H -0.27 -13.25 7.11 99.48 0.71 -12.54 15 20 H -0.27 -13.81 7.11 99.48 0.71 -13.11 15 21 C -0.13 -5.63 5.68 -18.69 -0.11 -5.73 15 22 H 0.19 4.68 8.06 -2.91 -0.02 4.66 15 23 H 0.14 3.37 8.06 -2.91 -0.02 3.35 15 24 H 0.16 3.52 8.06 -2.91 -0.02 3.50 15 25 H 0.13 3.56 8.06 -2.91 -0.02 3.54 15 26 H 0.28 14.80 8.30 -92.71 -0.77 14.03 15 Total: -1.00 -67.97 251.72 5.33 -62.63 By element: Atomic # 1 Polarization: -6.54 SS G_CDS: 1.24 Total: -5.30 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 3.08 Total: -17.37 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: 0.53 Total: -67.57 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.84 Total: 49.11 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -1.30 Total: 5.04 kcal Total: -67.97 5.33 -62.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223954.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.612 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds