Wall clock time and date at job start Mon Mar 30 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47256 * 2 1 4 4 C 1.37979 * 119.57397 * 264.93822 * 3 2 1 5 5 C 1.37813 * 120.66167 * 180.02562 * 4 3 2 6 6 C 1.40431 * 119.91068 * 0.02562 * 5 4 3 7 7 C 1.40936 * 120.13155 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00046 * 204.89710 * 7 6 5 9 9 C 1.39942 * 120.00087 * 24.89288 * 7 6 5 10 10 N 1.30847 * 119.99940 * 17.89881 * 9 7 6 11 11 Si 1.86805 * 119.99856 * 197.89724 * 9 7 6 12 12 H 1.48496 * 109.46903 * 60.00193 * 11 9 7 13 13 H 1.48495 * 109.46884 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47023 * 299.99952 * 11 9 7 15 15 C 1.42180 * 119.73823 * 359.97438 * 6 5 4 16 16 S 1.75775 * 130.59255 * 180.25257 * 15 6 5 17 17 C 1.70038 * 92.97098 * 180.02562 * 16 15 6 18 18 C 1.33840 * 112.19052 * 359.69302 * 17 16 15 19 19 C 1.43199 * 123.01434 * 180.25522 * 18 17 16 20 20 N 3.24751 * 80.51461 * 102.36343 * 2 1 3 21 21 C 1.39166 * 119.55201 * 359.97438 * 15 6 5 22 22 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 23 23 H 1.09011 * 109.46910 * 300.00447 * 1 2 3 24 24 H 1.08999 * 109.46928 * 60.00160 * 1 2 3 25 25 H 1.08998 * 109.46651 * 239.99462 * 2 1 3 26 26 H 1.08999 * 109.46928 * 119.99840 * 2 1 3 27 27 H 1.07993 * 119.67358 * 0.04131 * 4 3 2 28 28 H 1.07996 * 120.04456 * 179.97438 * 5 4 3 29 29 H 0.97007 * 120.00094 * 179.97438 * 10 9 7 30 30 H 1.07991 * 123.90376 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3592 2.0275 -1.1954 5 6 2.8212 3.3256 -1.2214 6 6 2.9632 4.0426 -0.0222 7 6 3.4348 5.3705 -0.0435 8 1 3.9197 5.7854 0.8279 9 6 3.2747 6.1516 -1.1936 10 7 2.4041 5.8022 -2.1057 11 14 4.3041 7.6929 -1.4265 12 1 5.7439 7.3297 -1.4370 13 1 3.9461 8.3370 -2.7157 14 1 4.0400 8.6377 -0.3116 15 6 2.6284 3.4238 1.2133 16 16 2.6885 4.0446 2.8567 17 6 2.1158 2.5883 3.5220 18 6 1.8752 1.6643 2.5842 19 6 1.3811 0.3549 2.8876 20 7 0.9949 -0.6858 3.1288 21 6 2.1623 2.1125 1.2201 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2517 1.4798 -2.1199 28 1 3.0745 3.7907 -2.1626 29 1 2.2929 6.3438 -2.9028 30 1 1.9596 2.4291 4.5786 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396223998.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:50 Heat of formation + Delta-G solvation = 47.829982 kcal Electronic energy + Delta-G solvation = -15995.053416 eV Core-core repulsion = 13459.734063 eV Total energy + Delta-G solvation = -2535.319352 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.76361 -36.34868 -34.66168 -34.08942 -32.28475 -29.32565 -28.20343 -25.66612 -23.95480 -22.51483 -20.86943 -20.38390 -18.01403 -16.57521 -16.07574 -15.15865 -14.70902 -14.40737 -13.95863 -13.70370 -13.17096 -13.10341 -12.75494 -12.51362 -12.22585 -11.95724 -11.75820 -11.55771 -11.32035 -11.23744 -11.06536 -10.70734 -10.52061 -10.39276 -10.04120 -9.86849 -9.49012 -9.31106 -8.32219 -7.52683 -7.06124 -6.85009 -4.55834 1.31788 2.31975 2.51129 2.69972 2.85907 2.95308 2.97097 3.06704 3.22364 3.75053 3.94434 4.40282 4.69210 5.21941 5.30517 5.65650 5.69656 6.00089 6.06227 6.27209 6.33662 6.36051 6.42729 6.49170 6.75022 6.76538 6.92374 6.97096 7.19640 7.44459 7.66095 7.83606 7.95071 7.97724 8.33037 8.54236 8.61981 9.90812 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.007423 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.849633 B = 3771.185415 C = 4664.631820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.185 4.185 4 C -0.070 4.070 5 C -0.169 4.169 6 C 0.151 3.849 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.776 5.776 11 Si 0.911 3.089 12 H -0.260 1.260 13 H -0.276 1.276 14 H -0.262 1.262 15 C -0.231 4.231 16 S 0.164 5.836 17 C -0.193 4.193 18 C -0.055 4.055 19 C 0.292 3.708 20 N -0.451 5.451 21 C -0.010 4.010 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.287 0.713 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 -0.165 2.969 3.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.189 4.189 4 C -0.089 4.089 5 C -0.192 4.192 6 C 0.146 3.854 7 C -0.480 4.480 8 H 0.101 0.899 9 C -0.142 4.142 10 N -0.400 5.400 11 Si 0.735 3.265 12 H -0.185 1.185 13 H -0.201 1.201 14 H -0.187 1.187 15 C -0.346 4.346 16 S 0.433 5.567 17 C -0.333 4.333 18 C -0.076 4.076 19 C -0.023 4.023 20 N -0.129 5.129 21 C -0.017 4.017 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.144 0.856 29 H 0.098 0.902 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.634 -0.258 3.800 3.861 hybrid contribution -0.002 -0.292 -0.855 0.903 sum 0.631 -0.549 2.945 3.062 Atomic orbital electron populations 1.21742 0.96437 0.99916 1.01653 1.20253 0.94954 0.94386 1.00736 1.18765 1.13396 0.95661 0.91124 1.20436 0.98137 0.95205 0.95142 1.21136 1.06803 0.92982 0.98329 1.16923 0.88214 0.92261 0.88011 1.19515 1.32871 0.96189 0.99434 0.89920 1.25936 0.93676 0.99857 0.94776 1.69813 1.24885 1.37253 1.08000 0.86296 0.81092 0.80482 0.78665 1.18477 1.20079 1.18662 1.22552 1.17268 0.97990 0.96832 1.82511 1.65323 1.10371 0.98504 1.24737 1.05541 1.00059 1.02983 1.15869 1.09872 0.88294 0.93606 1.25239 0.92648 0.92310 0.92079 1.81138 1.11042 1.11268 1.09430 1.18138 1.00612 0.92946 0.89955 0.93996 0.93415 0.92795 0.92568 0.92971 0.88535 0.85639 0.90232 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.63 37.16 0.36 -2.10 16 2 C -0.07 -1.22 5.37 -27.88 -0.15 -1.37 16 3 C -0.19 -3.92 5.20 -103.73 -0.54 -4.46 16 4 C -0.07 -1.52 9.59 -39.83 -0.38 -1.90 16 5 C -0.17 -4.00 8.67 -38.91 -0.34 -4.34 16 6 C 0.15 3.65 5.59 -106.54 -0.60 3.05 16 7 C -0.45 -10.70 8.83 -37.92 -0.33 -11.03 16 8 H 0.08 1.87 7.76 -52.49 -0.41 1.46 16 9 C 0.08 1.77 5.12 -17.33 -0.09 1.68 16 10 N -0.78 -18.13 10.97 55.55 0.61 -17.52 16 11 Si 0.91 16.89 29.60 -169.99 -5.03 11.86 16 12 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 13 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 14 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 15 C -0.23 -5.14 6.35 -37.73 -0.24 -5.38 16 16 S 0.16 2.94 22.58 -107.50 -2.43 0.51 16 17 C -0.19 -3.18 10.55 29.19 0.31 -2.88 16 18 C -0.05 -1.04 5.82 -106.22 -0.62 -1.65 16 19 C 0.29 5.45 11.60 -22.47 -0.26 5.19 16 20 N -0.45 -8.62 18.17 41.84 0.76 -7.86 16 21 C -0.01 -0.21 5.99 -105.27 -0.63 -0.84 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.88 7.24 -51.92 -0.38 0.51 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.96 8.03 -51.93 -0.42 0.55 16 26 H 0.05 1.00 5.57 -51.93 -0.29 0.71 16 27 H 0.10 1.86 8.05 -52.49 -0.42 1.44 16 28 H 0.13 3.03 6.16 -52.49 -0.32 2.70 16 29 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 30 H 0.16 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 276.40 15.07 4.17 4.17 Total: -1.00 -24.74 276.40 -8.07 -32.82 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -2.64 Total: 2.06 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.51 Total: -26.03 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 1.37 Total: -25.38 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.43 Total: 0.51 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -24.74 -8.07 -32.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223998.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.646 kcal (2) G-P(sol) polarization free energy of solvation -24.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds