Wall clock time and date at job start Mon Mar 30 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47256 * 2 1 4 4 C 1.37979 * 119.57397 * 264.93822 * 3 2 1 5 5 C 1.37813 * 120.66167 * 180.02562 * 4 3 2 6 6 C 1.40431 * 119.91068 * 0.02562 * 5 4 3 7 7 C 1.40936 * 120.13155 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00046 * 204.89710 * 7 6 5 9 9 C 1.39942 * 120.00087 * 24.89288 * 7 6 5 10 10 N 1.30847 * 119.99940 * 17.89881 * 9 7 6 11 11 Si 1.86805 * 119.99856 * 197.89724 * 9 7 6 12 12 H 1.48496 * 109.46903 * 60.00193 * 11 9 7 13 13 H 1.48495 * 109.46884 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47023 * 299.99952 * 11 9 7 15 15 C 1.42180 * 119.73823 * 359.97438 * 6 5 4 16 16 S 1.75775 * 130.59255 * 180.25257 * 15 6 5 17 17 C 1.70038 * 92.97098 * 180.02562 * 16 15 6 18 18 C 1.33840 * 112.19052 * 359.69302 * 17 16 15 19 19 C 1.43199 * 123.01434 * 180.25522 * 18 17 16 20 20 N 3.24751 * 80.51461 * 102.36343 * 2 1 3 21 21 C 1.39166 * 119.55201 * 359.97438 * 15 6 5 22 22 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 23 23 H 1.09011 * 109.46910 * 300.00447 * 1 2 3 24 24 H 1.08999 * 109.46928 * 60.00160 * 1 2 3 25 25 H 1.08998 * 109.46651 * 239.99462 * 2 1 3 26 26 H 1.08999 * 109.46928 * 119.99840 * 2 1 3 27 27 H 1.07993 * 119.67358 * 0.04131 * 4 3 2 28 28 H 1.07996 * 120.04456 * 179.97438 * 5 4 3 29 29 H 0.97007 * 120.00094 * 179.97438 * 10 9 7 30 30 H 1.07991 * 123.90376 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3592 2.0275 -1.1954 5 6 2.8212 3.3256 -1.2214 6 6 2.9632 4.0426 -0.0222 7 6 3.4348 5.3705 -0.0435 8 1 3.9197 5.7854 0.8279 9 6 3.2747 6.1516 -1.1936 10 7 2.4041 5.8022 -2.1057 11 14 4.3041 7.6929 -1.4265 12 1 5.7439 7.3297 -1.4370 13 1 3.9461 8.3370 -2.7157 14 1 4.0400 8.6377 -0.3116 15 6 2.6284 3.4238 1.2133 16 16 2.6885 4.0446 2.8567 17 6 2.1158 2.5883 3.5220 18 6 1.8752 1.6643 2.5842 19 6 1.3811 0.3549 2.8876 20 7 0.9949 -0.6858 3.1288 21 6 2.1623 2.1125 1.2201 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2517 1.4798 -2.1199 28 1 3.0745 3.7907 -2.1626 29 1 2.2929 6.3438 -2.9028 30 1 1.9596 2.4291 4.5786 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396223998.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:50 Heat of formation + Delta-G solvation = 37.722806 kcal Electronic energy + Delta-G solvation = -15995.491696 eV Core-core repulsion = 13459.734063 eV Total energy + Delta-G solvation = -2535.757632 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35184 -37.88416 -36.25311 -35.63143 -33.89388 -30.97107 -29.79722 -27.29823 -25.45269 -24.09353 -22.50932 -21.96143 -19.66189 -18.07233 -17.69531 -16.70670 -16.31136 -15.98227 -15.48730 -15.21937 -14.67007 -14.61180 -14.27009 -14.06862 -13.74348 -13.50678 -13.29946 -13.06944 -12.85763 -12.75978 -12.60593 -12.20708 -12.00622 -11.94529 -11.62577 -11.45713 -11.08604 -10.96949 -9.91995 -9.16895 -8.72862 -8.43825 -6.30665 -0.13174 0.81778 0.87226 1.08821 1.31273 1.43263 1.53094 1.57140 1.74134 2.20676 2.42340 2.75703 3.23219 3.57802 3.85271 4.18484 4.22064 4.54011 4.60016 4.71090 4.82591 4.84085 4.95378 5.00990 5.09663 5.24936 5.31907 5.34684 5.53421 5.75845 5.93795 6.15794 6.22680 6.51924 6.60656 6.81221 6.90577 8.26265 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.007423 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.849633 B = 3771.185415 C = 4664.631820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.193 4.193 4 C -0.075 4.075 5 C -0.197 4.197 6 C 0.126 3.874 7 C -0.480 4.480 8 H 0.085 0.915 9 C 0.042 3.958 10 N -0.809 5.809 11 Si 0.978 3.022 12 H -0.259 1.259 13 H -0.269 1.269 14 H -0.256 1.256 15 C -0.265 4.265 16 S 0.205 5.795 17 C -0.163 4.163 18 C -0.078 4.078 19 C 0.303 3.697 20 N -0.461 5.461 21 C -0.022 4.022 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.292 0.708 30 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 -0.114 4.423 4.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.197 4.197 4 C -0.094 4.094 5 C -0.220 4.220 6 C 0.121 3.879 7 C -0.509 4.509 8 H 0.103 0.897 9 C -0.176 4.176 10 N -0.433 5.433 11 Si 0.798 3.202 12 H -0.184 1.184 13 H -0.194 1.194 14 H -0.180 1.180 15 C -0.380 4.380 16 S 0.474 5.526 17 C -0.303 4.303 18 C -0.099 4.099 19 C -0.012 4.012 20 N -0.139 5.139 21 C -0.029 4.029 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.665 -0.225 5.255 5.301 hybrid contribution -0.045 -0.366 -1.214 1.268 sum 0.620 -0.591 4.041 4.131 Atomic orbital electron populations 1.21672 0.95487 1.00923 1.01030 1.20252 0.95672 0.92815 1.01221 1.19120 1.12667 0.96864 0.91016 1.20632 0.97752 0.94753 0.96306 1.21111 1.08878 0.94055 0.97986 1.17226 0.88791 0.92863 0.89040 1.19742 1.34112 0.96615 1.00389 0.89691 1.26717 0.94204 1.02581 0.94104 1.69868 1.26102 1.38681 1.08630 0.85296 0.79219 0.76824 0.78836 1.18376 1.19382 1.18033 1.22913 1.17433 0.98883 0.98729 1.82342 1.64600 1.10362 0.95297 1.25225 1.01944 0.98420 1.04727 1.15756 1.12126 0.89154 0.92869 1.25076 0.92239 0.92038 0.91847 1.81149 1.11648 1.11381 1.09707 1.18501 1.00111 0.92922 0.91353 0.92139 0.94713 0.92710 0.91142 0.93350 0.86871 0.87192 0.89687 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 9.63 71.98 0.69 -3.80 16 2 C -0.06 -2.24 5.37 29.85 0.16 -2.08 16 3 C -0.19 -8.13 5.20 -19.29 -0.10 -8.23 16 4 C -0.08 -3.32 9.59 22.11 0.21 -3.11 16 5 C -0.20 -9.68 8.67 22.70 0.20 -9.48 16 6 C 0.13 6.23 5.59 -21.11 -0.12 6.11 16 7 C -0.48 -23.22 8.83 23.34 0.21 -23.02 16 8 H 0.09 3.89 7.76 -2.91 -0.02 3.87 16 9 C 0.04 1.91 5.12 85.25 0.44 2.34 16 10 N -0.81 -38.86 10.97 21.83 0.24 -38.62 16 11 Si 0.98 34.65 29.60 68.60 2.03 36.68 16 12 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 13 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 14 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 15 C -0.26 -11.75 6.35 23.47 0.15 -11.60 16 16 S 0.21 6.95 22.58 -56.49 -1.28 5.68 16 17 C -0.16 -4.85 10.55 66.82 0.71 -4.14 16 18 C -0.08 -2.80 5.82 -20.90 -0.12 -2.92 16 19 C 0.30 10.68 11.60 88.33 1.02 11.70 16 20 N -0.46 -16.68 18.17 19.00 0.35 -16.34 16 21 C -0.02 -0.92 5.99 -20.28 -0.12 -1.04 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.03 1.23 7.24 -2.38 -0.02 1.22 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.07 2.31 8.03 -2.39 -0.02 2.29 16 26 H 0.05 1.78 5.57 -2.39 -0.01 1.77 16 27 H 0.11 4.42 8.05 -2.91 -0.02 4.40 16 28 H 0.11 5.60 6.16 -2.91 -0.02 5.58 16 29 H 0.29 12.71 8.30 -92.70 -0.77 11.94 16 30 H 0.20 4.24 8.06 -2.92 -0.02 4.21 16 Total: -1.00 -53.72 276.40 5.84 -47.88 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.18 Total: 13.99 kcal Atomic # 6 Polarization: -52.59 SS G_CDS: 3.32 Total: -49.27 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.58 Total: -54.96 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 2.03 Total: 36.68 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -1.28 Total: 5.68 kcal Total: -53.72 5.84 -47.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223998.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.606 kcal (2) G-P(sol) polarization free energy of solvation -53.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds