Wall clock time and date at job start Mon Mar 30 2020 06:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.47062 * 2 1 4 4 S 1.69979 * 124.01715 * 275.28733 * 3 2 1 5 5 C 1.75792 * 93.22277 * 180.22844 * 4 3 2 6 6 C 1.39482 * 130.12435 * 179.75027 * 5 4 3 7 7 C 1.39131 * 120.11087 * 180.02562 * 6 5 4 8 8 C 1.43197 * 120.07695 * 179.97438 * 7 6 5 9 9 N 8.81136 * 109.05859 * 353.82316 * 2 1 3 10 10 C 1.40086 * 119.85216 * 0.02562 * 7 6 5 11 11 C 1.36038 * 120.24355 * 0.02562 * 10 7 6 12 12 C 1.39563 * 110.19342 * 359.80452 * 5 4 3 13 13 C 1.36535 * 124.01569 * 95.14497 * 3 2 1 14 14 C 1.40849 * 123.28177 * 359.97438 * 13 3 2 15 15 H 1.07998 * 119.99957 * 321.23485 * 14 13 3 16 16 C 1.39719 * 120.00306 * 141.23537 * 14 13 3 17 17 N 1.31061 * 119.99967 * 340.46936 * 16 14 13 18 18 Si 1.86807 * 120.00017 * 160.74378 * 16 14 13 19 19 H 1.48499 * 109.46780 * 59.99991 * 18 16 14 20 20 H 1.48497 * 109.46918 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46896 * 300.00222 * 18 16 14 22 22 H 1.08999 * 109.46994 * 299.99904 * 1 2 3 23 23 H 1.08998 * 109.47637 * 59.99777 * 1 2 3 24 24 H 1.09007 * 109.47206 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46318 * 239.99786 * 2 1 3 26 26 H 1.08997 * 109.46941 * 120.00494 * 2 1 3 27 27 H 1.08005 * 119.94141 * 0.02562 * 6 5 4 28 28 H 1.07993 * 119.88230 * 179.97438 * 10 7 6 29 29 H 1.07993 * 119.67130 * 179.97438 * 11 10 7 30 30 H 0.97003 * 119.99588 * 185.29056 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 16 2.2269 2.3606 -1.4029 5 6 2.8150 3.7543 -0.5074 6 6 3.2222 5.0084 -0.9622 7 6 3.6569 5.9717 -0.0573 8 6 4.0754 7.2588 -0.5250 9 7 4.4072 8.2800 -0.8961 10 6 3.6854 5.6793 1.3124 11 6 3.2901 4.4572 1.7605 12 6 2.8465 3.4709 0.8588 13 6 2.3826 2.1070 1.1272 14 6 2.3108 1.5559 2.4213 15 1 1.4852 0.9134 2.6896 16 6 3.3075 1.8403 3.3582 17 7 4.4756 2.2806 2.9590 18 14 2.9779 1.5857 5.1792 19 1 2.6484 0.1592 5.4278 20 1 4.1863 1.9581 5.9577 21 1 1.8367 2.4379 5.5995 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.2001 5.2321 -2.0186 28 1 4.0231 6.4265 2.0152 29 1 3.3162 4.2415 2.8184 30 1 5.1922 2.4050 3.6008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396224848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:24 Heat of formation + Delta-G solvation = 47.121742 kcal Electronic energy + Delta-G solvation = -15890.283637 eV Core-core repulsion = 13354.933573 eV Total energy + Delta-G solvation = -2535.350064 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.91736 -36.47519 -35.17007 -33.19011 -31.79713 -30.30295 -28.49295 -26.00942 -23.66073 -22.34147 -21.20052 -19.48195 -18.48834 -16.84851 -15.65301 -15.25049 -14.81530 -14.53917 -13.68688 -13.60672 -13.35781 -13.13892 -12.78829 -12.66612 -12.32220 -12.27674 -11.68467 -11.53872 -11.45955 -11.33030 -10.93680 -10.82204 -10.51594 -10.12328 -9.91992 -9.79719 -9.49227 -9.09585 -8.66254 -7.44909 -6.91871 -6.63257 -4.46186 1.21472 1.98672 2.58639 2.81433 3.02115 3.04182 3.04817 3.14492 3.50336 3.75534 3.89799 4.36662 4.49535 5.01088 5.39721 5.57083 5.80045 5.93279 6.00036 6.10621 6.20988 6.34218 6.51262 6.53428 6.67229 6.83514 6.88194 7.00912 7.07390 7.12837 7.23190 7.54103 7.81889 7.83613 8.23272 8.54608 8.75949 10.11990 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.009430 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.373165 B = 2968.610412 C = 4485.556284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.014 4.014 3 C -0.357 4.357 4 S 0.056 5.944 5 C -0.153 4.153 6 C -0.041 4.041 7 C -0.048 4.048 8 C 0.276 3.724 9 N -0.452 5.452 10 C -0.109 4.109 11 C -0.035 4.035 12 C -0.005 4.005 13 C 0.116 3.884 14 C -0.456 4.456 15 H 0.084 0.916 16 C 0.081 3.919 17 N -0.799 5.799 18 Si 0.900 3.100 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.263 1.263 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 -0.636 -1.080 3.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.053 4.053 3 C -0.474 4.474 4 S 0.321 5.679 5 C -0.268 4.268 6 C -0.067 4.067 7 C -0.054 4.054 8 C -0.038 4.038 9 N -0.129 5.129 10 C -0.132 4.132 11 C -0.055 4.055 12 C -0.016 4.016 13 C 0.106 3.894 14 C -0.489 4.489 15 H 0.102 0.898 16 C -0.137 4.137 17 N -0.425 5.425 18 Si 0.724 3.276 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.187 1.187 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.149 0.851 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.515 0.678 -3.079 4.033 hybrid contribution 0.210 -0.293 2.587 2.612 sum -2.305 0.385 -0.492 2.388 Atomic orbital electron populations 1.21787 0.97146 0.99605 1.01476 1.19450 0.93660 0.91471 1.00739 1.22877 1.29160 1.00953 0.94372 1.81824 1.70898 1.04166 1.11047 1.22472 1.08002 0.98344 0.98017 1.20247 0.97790 0.90559 0.98126 1.15634 1.08408 0.87284 0.94041 1.25859 0.92532 0.92732 0.92693 1.81162 1.11004 1.11863 1.08828 1.20470 1.02323 0.97637 0.92801 1.20668 0.94176 0.90272 1.00367 1.19784 0.96118 0.94955 0.90774 1.17242 0.90816 0.87958 0.93343 1.18824 1.08395 1.27571 0.94128 0.89776 1.25802 0.94466 0.92578 1.00831 1.69909 1.01489 1.34055 1.37073 0.86490 0.78939 0.80055 0.82100 1.19000 1.20333 1.18746 0.92770 0.93671 0.94144 0.93862 0.91014 0.86117 0.86211 0.85089 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 37.16 0.37 -2.01 16 2 C -0.01 -0.26 6.08 -27.89 -0.17 -0.43 16 3 C -0.36 -7.76 5.56 -34.93 -0.19 -7.95 16 4 S 0.06 1.10 22.89 -107.50 -2.46 -1.36 16 5 C -0.15 -3.12 6.43 -38.62 -0.25 -3.37 16 6 C -0.04 -0.73 9.78 -38.79 -0.38 -1.11 16 7 C -0.05 -0.83 5.73 -106.95 -0.61 -1.44 16 8 C 0.28 4.70 15.32 -22.47 -0.34 4.35 16 9 N -0.45 -8.18 18.54 41.84 0.78 -7.40 16 10 C -0.11 -1.92 9.67 -39.68 -0.38 -2.31 16 11 C -0.04 -0.72 8.39 -39.40 -0.33 -1.05 16 12 C -0.01 -0.11 5.57 -105.09 -0.58 -0.70 16 13 C 0.12 2.72 5.38 -106.18 -0.57 2.15 16 14 C -0.46 -10.76 8.08 -38.04 -0.31 -11.07 16 15 H 0.08 1.95 7.81 -52.49 -0.41 1.54 16 16 C 0.08 1.82 4.11 -17.33 -0.07 1.75 16 17 N -0.80 -18.63 10.81 55.54 0.60 -18.03 16 18 Si 0.90 17.16 29.60 -169.99 -5.03 12.12 16 19 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.44 7.35 -51.93 -0.38 1.06 16 27 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 28 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 29 H 0.13 2.73 6.05 -52.49 -0.32 2.42 16 30 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 LS Contribution 281.34 15.07 4.24 4.24 Total: -1.00 -24.29 281.34 -8.49 -32.78 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -2.78 Total: 0.84 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -3.83 Total: -23.19 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 1.38 Total: -25.43 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.12 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.46 Total: -1.36 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -24.29 -8.49 -32.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.899 kcal (2) G-P(sol) polarization free energy of solvation -24.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds