Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.47062 * 2 1 4 4 S 1.69979 * 124.01715 * 275.28733 * 3 2 1 5 5 C 1.75792 * 93.22277 * 180.22844 * 4 3 2 6 6 C 1.39482 * 130.12435 * 179.75027 * 5 4 3 7 7 C 1.39131 * 120.11087 * 180.02562 * 6 5 4 8 8 C 1.43197 * 120.07695 * 179.97438 * 7 6 5 9 9 N 8.81136 * 109.05859 * 353.82316 * 2 1 3 10 10 C 1.40086 * 119.85216 * 0.02562 * 7 6 5 11 11 C 1.36038 * 120.24355 * 0.02562 * 10 7 6 12 12 C 1.39563 * 110.19342 * 359.80452 * 5 4 3 13 13 C 1.36535 * 124.01569 * 95.14497 * 3 2 1 14 14 C 1.40849 * 123.28177 * 359.97438 * 13 3 2 15 15 H 1.07998 * 119.99957 * 321.23485 * 14 13 3 16 16 C 1.39719 * 120.00306 * 141.23537 * 14 13 3 17 17 N 1.31061 * 119.99967 * 340.46936 * 16 14 13 18 18 Si 1.86807 * 120.00017 * 160.74378 * 16 14 13 19 19 H 1.48499 * 109.46780 * 59.99991 * 18 16 14 20 20 H 1.48497 * 109.46918 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46896 * 300.00222 * 18 16 14 22 22 H 1.08999 * 109.46994 * 299.99904 * 1 2 3 23 23 H 1.08998 * 109.47637 * 59.99777 * 1 2 3 24 24 H 1.09007 * 109.47206 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46318 * 239.99786 * 2 1 3 26 26 H 1.08997 * 109.46941 * 120.00494 * 2 1 3 27 27 H 1.08005 * 119.94141 * 0.02562 * 6 5 4 28 28 H 1.07993 * 119.88230 * 179.97438 * 10 7 6 29 29 H 1.07993 * 119.67130 * 179.97438 * 11 10 7 30 30 H 0.97003 * 119.99588 * 185.29056 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 16 2.2269 2.3606 -1.4029 5 6 2.8150 3.7543 -0.5074 6 6 3.2222 5.0084 -0.9622 7 6 3.6569 5.9717 -0.0573 8 6 4.0754 7.2588 -0.5250 9 7 4.4072 8.2800 -0.8961 10 6 3.6854 5.6793 1.3124 11 6 3.2901 4.4572 1.7605 12 6 2.8465 3.4709 0.8588 13 6 2.3826 2.1070 1.1272 14 6 2.3108 1.5559 2.4213 15 1 1.4852 0.9134 2.6896 16 6 3.3075 1.8403 3.3582 17 7 4.4756 2.2806 2.9590 18 14 2.9779 1.5857 5.1792 19 1 2.6484 0.1592 5.4278 20 1 4.1863 1.9581 5.9577 21 1 1.8367 2.4379 5.5995 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.2001 5.2321 -2.0186 28 1 4.0231 6.4265 2.0152 29 1 3.3162 4.2415 2.8184 30 1 5.1922 2.4050 3.6008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396224848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = 38.083050 kcal Electronic energy + Delta-G solvation = -15890.675584 eV Core-core repulsion = 13354.933573 eV Total energy + Delta-G solvation = -2535.742011 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.42956 -37.96427 -36.69007 -34.82688 -33.30713 -31.79746 -30.05481 -27.66044 -25.15215 -23.83343 -22.74441 -21.09436 -19.97566 -18.48795 -17.21775 -16.85828 -16.32597 -16.04516 -15.14373 -15.06324 -14.83072 -14.65637 -14.30826 -14.11513 -13.82336 -13.74698 -13.26013 -13.01849 -13.00316 -12.86078 -12.48325 -12.32205 -12.01403 -11.62518 -11.46881 -11.35790 -11.08332 -10.75417 -10.19956 -9.01525 -8.58097 -8.23454 -6.18745 -0.29105 0.48930 1.05632 1.25574 1.45729 1.52921 1.62614 1.65149 1.86561 2.22952 2.31114 2.91252 2.95224 3.33737 3.99616 4.13618 4.32537 4.48406 4.55097 4.63517 4.75954 4.84540 5.05554 5.10064 5.20612 5.31462 5.37554 5.44795 5.53580 5.58261 5.67766 5.99577 6.15564 6.43887 6.49529 6.85103 7.04683 8.46228 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.009430 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.373165 B = 2968.610412 C = 4485.556284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.017 4.017 3 C -0.369 4.369 4 S 0.090 5.910 5 C -0.172 4.172 6 C -0.034 4.034 7 C -0.038 4.038 8 C 0.294 3.706 9 N -0.463 5.463 10 C -0.096 4.096 11 C -0.052 4.052 12 C -0.035 4.035 13 C 0.082 3.918 14 C -0.484 4.484 15 H 0.075 0.925 16 C 0.052 3.948 17 N -0.826 5.826 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.272 1.272 21 H -0.262 1.262 22 H 0.039 0.961 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.120 0.880 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 0.074 -1.651 3.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.056 4.056 3 C -0.486 4.486 4 S 0.355 5.645 5 C -0.287 4.287 6 C -0.059 4.059 7 C -0.044 4.044 8 C -0.020 4.020 9 N -0.139 5.139 10 C -0.119 4.119 11 C -0.072 4.072 12 C -0.046 4.046 13 C 0.073 3.927 14 C -0.517 4.517 15 H 0.093 0.907 16 C -0.163 4.163 17 N -0.453 5.453 18 Si 0.781 3.219 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.186 1.186 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.138 0.862 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.642 1.388 -3.664 4.725 hybrid contribution 0.249 -0.488 2.651 2.707 sum -2.394 0.900 -1.012 2.750 Atomic orbital electron populations 1.21682 0.95105 1.01245 1.01023 1.19524 0.95412 0.90202 1.00473 1.23406 1.27667 1.02201 0.95315 1.81503 1.70511 1.03201 1.09327 1.22705 1.08807 0.99589 0.97576 1.20521 0.96318 0.89439 0.99641 1.15597 1.07704 0.87274 0.93814 1.25535 0.92061 0.92214 0.92234 1.81201 1.11312 1.12164 1.09249 1.20698 1.00580 0.97064 0.93602 1.20639 0.95564 0.91174 0.99778 1.19935 0.97601 0.94959 0.92096 1.17614 0.92070 0.89104 0.93928 1.18929 1.08854 1.28698 0.95256 0.90700 1.26338 0.93921 0.92115 1.03899 1.69956 1.02065 1.35167 1.38154 0.85596 0.78787 0.79648 0.77841 1.19134 1.19681 1.18639 0.94217 0.93024 0.91483 0.92621 0.92706 0.83311 0.83515 0.86230 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.89 71.98 0.71 -3.61 16 2 C -0.02 -0.64 6.08 29.85 0.18 -0.45 16 3 C -0.37 -16.13 5.56 25.29 0.14 -15.99 16 4 S 0.09 3.43 22.89 -56.49 -1.29 2.14 16 5 C -0.17 -6.83 6.43 22.89 0.15 -6.69 16 6 C -0.03 -1.12 9.78 22.78 0.22 -0.90 16 7 C -0.04 -1.22 5.73 -21.37 -0.12 -1.35 16 8 C 0.29 9.17 15.32 88.33 1.35 10.52 16 9 N -0.46 -15.50 18.54 19.00 0.35 -15.15 16 10 C -0.10 -3.24 9.67 22.21 0.21 -3.03 16 11 C -0.05 -2.12 8.39 22.39 0.19 -1.93 16 12 C -0.03 -1.57 5.57 -20.17 -0.11 -1.68 16 13 C 0.08 3.95 5.38 -20.87 -0.11 3.84 16 14 C -0.48 -23.60 8.08 23.27 0.19 -23.41 16 15 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 16 C 0.05 2.41 4.11 85.17 0.35 2.76 16 17 N -0.83 -39.26 10.81 21.80 0.24 -39.02 16 18 Si 0.96 35.71 29.60 68.60 2.03 37.74 16 19 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 20 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 22 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 2.26 7.35 -2.39 -0.02 2.24 16 27 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 28 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 29 H 0.12 5.09 6.05 -2.91 -0.02 5.07 16 30 H 0.29 12.57 8.31 -92.71 -0.77 11.80 16 Total: -1.00 -51.71 281.34 5.85 -45.87 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.17 Total: 10.35 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 3.35 Total: -41.92 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.59 Total: -54.18 kcal Atomic # 14 Polarization: 35.71 SS G_CDS: 2.03 Total: 37.74 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.29 Total: 2.14 kcal Total: -51.71 5.85 -45.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.951 kcal (2) G-P(sol) polarization free energy of solvation -51.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds