Wall clock time and date at job start Mon Mar 30 2020 06:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47027 * 2 1 4 4 C 1.32110 * 124.38255 * 89.72036 * 3 2 1 5 5 C 1.45040 * 114.89338 * 179.80674 * 4 3 2 6 6 C 1.39246 * 111.97633 * 0.46663 * 5 4 3 7 7 S 1.75329 * 124.37995 * 270.01803 * 3 2 1 8 8 C 1.42263 * 119.67808 * 179.75619 * 6 5 4 9 9 C 1.40518 * 119.96282 * 179.97438 * 8 6 5 10 10 H 1.08002 * 120.00198 * 334.48714 * 9 8 6 11 11 C 1.40223 * 120.00024 * 154.48810 * 9 8 6 12 12 N 1.30686 * 120.00005 * 342.43749 * 11 9 8 13 13 Si 1.86801 * 120.00289 * 162.43310 * 11 9 8 14 14 H 1.48506 * 109.46525 * 60.00201 * 13 11 9 15 15 H 1.48498 * 109.47378 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46944 * 300.00466 * 13 11 9 17 17 C 1.40726 * 120.07690 * 359.97438 * 8 6 5 18 18 C 1.36220 * 120.23075 * 0.04128 * 17 8 6 19 19 C 1.39551 * 120.73434 * 359.95597 * 18 17 8 20 20 C 1.43191 * 119.74464 * 180.02562 * 19 18 17 21 21 N 6.04851 * 103.53420 * 47.11804 * 2 1 3 22 22 H 1.08999 * 109.47792 * 300.00256 * 1 2 3 23 23 H 1.09001 * 109.47159 * 60.00832 * 1 2 3 24 24 H 1.09006 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46927 * 119.99489 * 2 1 3 26 26 H 1.09000 * 109.47682 * 239.99199 * 2 1 3 27 27 H 1.07996 * 122.55653 * 359.97438 * 4 3 2 28 28 H 0.97002 * 119.99969 * 179.97438 * 12 11 9 29 29 H 1.08000 * 119.88551 * 180.02562 * 17 8 6 30 30 H 1.07992 * 119.63005 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2759 2.1260 1.0903 5 6 2.7581 3.4729 0.8512 6 6 2.8580 3.7569 -0.5083 7 16 2.3619 2.3544 -1.4470 8 6 3.3108 5.0383 -0.9288 9 6 3.4145 5.3312 -2.2992 10 1 3.5599 4.5334 -3.0124 11 6 3.3291 6.6594 -2.7407 12 7 2.8211 7.5761 -1.9600 13 14 3.9416 7.1185 -4.4447 14 1 3.1841 6.3515 -5.4661 15 1 3.7410 8.5729 -4.6676 16 1 5.3870 6.7960 -4.5546 17 6 3.6551 6.0130 0.0262 18 6 3.5575 5.7347 1.3561 19 6 3.1159 4.4850 1.7927 20 6 3.0208 4.2155 3.1958 21 7 2.9455 4.0017 4.3090 22 1 -0.3635 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 2.1300 1.7289 2.0839 28 1 2.7624 8.4950 -2.2653 29 1 3.9981 6.9849 -0.2964 30 1 3.8247 6.4897 2.0805 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396224896.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:53 Heat of formation + Delta-G solvation = 40.057488 kcal Electronic energy + Delta-G solvation = -15618.687675 eV Core-core repulsion = 13083.031282 eV Total energy + Delta-G solvation = -2535.656393 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.43521 -35.82910 -35.49854 -33.92795 -32.01168 -30.42085 -27.75166 -26.19753 -23.75943 -22.10102 -21.33093 -19.48324 -17.93367 -17.63422 -15.73909 -15.06936 -14.78609 -14.60519 -13.86668 -13.53609 -13.22353 -13.08419 -12.71293 -12.58944 -12.21578 -11.94061 -11.87616 -11.61401 -11.38591 -11.24766 -11.03828 -10.93872 -10.84736 -10.28899 -10.23103 -9.95476 -9.64334 -9.45275 -8.38565 -7.49725 -7.27966 -6.92326 -4.77700 1.54690 2.31441 2.45339 2.82621 2.85526 2.88699 3.02522 3.21252 3.59369 3.71871 3.83168 4.50631 5.00764 5.24948 5.27042 5.27682 5.48974 5.66900 5.93879 5.96344 6.06079 6.10191 6.31671 6.36072 6.53524 6.65697 6.77095 6.95975 7.09172 7.24187 7.47596 7.64615 7.74772 8.12711 8.29621 8.39595 8.60856 9.63838 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.007936 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.468060 B = 3527.200026 C = 4876.214718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C -0.168 4.168 4 C -0.134 4.134 5 C 0.013 3.987 6 C -0.218 4.218 7 S 0.064 5.936 8 C 0.165 3.835 9 C -0.423 4.423 10 H 0.090 0.910 11 C 0.074 3.926 12 N -0.753 5.753 13 Si 0.917 3.083 14 H -0.259 1.259 15 H -0.273 1.273 16 H -0.257 1.257 17 C -0.182 4.182 18 C -0.025 4.025 19 C -0.175 4.175 20 C 0.291 3.709 21 N -0.510 5.510 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.124 0.876 28 H 0.293 0.707 29 H 0.130 0.870 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.861 -5.187 -4.213 6.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.284 4.284 4 C -0.166 4.166 5 C 0.003 3.997 6 C -0.333 4.333 7 S 0.328 5.672 8 C 0.158 3.842 9 C -0.449 4.449 10 H 0.108 0.892 11 C -0.150 4.150 12 N -0.375 5.375 13 Si 0.740 3.260 14 H -0.183 1.183 15 H -0.197 1.197 16 H -0.181 1.181 17 C -0.205 4.205 18 C -0.047 4.047 19 C -0.184 4.184 20 C -0.018 4.018 21 N -0.190 5.190 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.142 0.858 28 H 0.105 0.895 29 H 0.147 0.853 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.186 -5.603 -4.035 7.006 hybrid contribution 0.302 0.802 0.417 0.953 sum -0.884 -4.801 -3.618 6.076 Atomic orbital electron populations 1.21775 0.94751 1.01262 1.02637 1.20064 0.95911 0.90510 1.02527 1.23870 1.07361 1.00013 0.97193 1.20742 1.04033 0.93609 0.98227 1.18597 0.97601 0.91663 0.91846 1.22416 1.16650 1.00096 0.94136 1.83494 1.70861 1.05088 1.07779 1.17089 0.85762 0.87607 0.93725 1.19799 1.38801 0.93303 0.93018 0.89233 1.26146 0.92222 0.95885 1.00736 1.69734 1.26401 1.03794 1.37532 0.86181 0.80891 0.78405 0.80572 1.18328 1.19719 1.18104 1.20694 1.08181 1.00940 0.90707 1.20174 0.95433 0.92997 0.96097 1.15147 1.24346 0.96474 0.82439 1.26039 0.91153 0.91832 0.92814 1.81062 1.15191 1.10136 1.12571 0.92447 0.92278 0.92615 0.90763 0.91098 0.85842 0.89538 0.85271 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 37.16 0.37 -1.42 16 2 C -0.05 -0.68 6.37 -27.88 -0.18 -0.86 16 3 C -0.17 -2.96 5.65 -36.23 -0.20 -3.16 16 4 C -0.13 -2.61 9.78 -38.81 -0.38 -2.99 16 5 C 0.01 0.28 5.99 -105.07 -0.63 -0.35 16 6 C -0.22 -4.92 6.36 -37.66 -0.24 -5.16 16 7 S 0.06 1.22 22.79 -107.50 -2.45 -1.23 16 8 C 0.16 3.89 5.59 -106.55 -0.60 3.30 16 9 C -0.42 -9.67 8.80 -37.98 -0.33 -10.00 16 10 H 0.09 1.98 7.75 -52.49 -0.41 1.57 16 11 C 0.07 1.59 5.12 -17.29 -0.09 1.50 16 12 N -0.75 -16.60 10.97 55.56 0.61 -15.99 16 13 Si 0.92 15.95 29.60 -169.99 -5.03 10.92 16 14 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 15 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 16 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 17 C -0.18 -4.17 8.59 -39.37 -0.34 -4.51 16 18 C -0.03 -0.55 9.61 -39.82 -0.38 -0.93 16 19 C -0.18 -3.87 5.82 -105.73 -0.62 -4.48 16 20 C 0.29 6.37 14.96 -22.47 -0.34 6.03 16 21 N -0.51 -11.45 18.54 41.84 0.78 -10.67 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.12 2.28 8.04 -52.49 -0.42 1.85 16 28 H 0.29 5.78 8.29 -40.82 -0.34 5.45 16 29 H 0.13 2.95 6.16 -52.49 -0.32 2.63 16 30 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 284.76 15.07 4.29 4.29 Total: -1.00 -24.77 284.76 -8.58 -33.35 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -2.82 Total: 2.35 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -3.95 Total: -23.03 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 1.39 Total: -26.66 kcal Atomic # 14 Polarization: 15.95 SS G_CDS: -5.03 Total: 10.92 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.45 Total: -1.23 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -24.77 -8.58 -33.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224896.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.409 kcal (2) G-P(sol) polarization free energy of solvation -24.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds