Wall clock time and date at job start Mon Mar 30 2020 06:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47027 * 2 1 4 4 C 1.32110 * 124.38255 * 89.72036 * 3 2 1 5 5 C 1.45040 * 114.89338 * 179.80674 * 4 3 2 6 6 C 1.39246 * 111.97633 * 0.46663 * 5 4 3 7 7 S 1.75329 * 124.37995 * 270.01803 * 3 2 1 8 8 C 1.42263 * 119.67808 * 179.75619 * 6 5 4 9 9 C 1.40518 * 119.96282 * 179.97438 * 8 6 5 10 10 H 1.08002 * 120.00198 * 334.48714 * 9 8 6 11 11 C 1.40223 * 120.00024 * 154.48810 * 9 8 6 12 12 N 1.30686 * 120.00005 * 342.43749 * 11 9 8 13 13 Si 1.86801 * 120.00289 * 162.43310 * 11 9 8 14 14 H 1.48506 * 109.46525 * 60.00201 * 13 11 9 15 15 H 1.48498 * 109.47378 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46944 * 300.00466 * 13 11 9 17 17 C 1.40726 * 120.07690 * 359.97438 * 8 6 5 18 18 C 1.36220 * 120.23075 * 0.04128 * 17 8 6 19 19 C 1.39551 * 120.73434 * 359.95597 * 18 17 8 20 20 C 1.43191 * 119.74464 * 180.02562 * 19 18 17 21 21 N 6.04851 * 103.53420 * 47.11804 * 2 1 3 22 22 H 1.08999 * 109.47792 * 300.00256 * 1 2 3 23 23 H 1.09001 * 109.47159 * 60.00832 * 1 2 3 24 24 H 1.09006 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46927 * 119.99489 * 2 1 3 26 26 H 1.09000 * 109.47682 * 239.99199 * 2 1 3 27 27 H 1.07996 * 122.55653 * 359.97438 * 4 3 2 28 28 H 0.97002 * 119.99969 * 179.97438 * 12 11 9 29 29 H 1.08000 * 119.88551 * 180.02562 * 17 8 6 30 30 H 1.07992 * 119.63005 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2759 2.1260 1.0903 5 6 2.7581 3.4729 0.8512 6 6 2.8580 3.7569 -0.5083 7 16 2.3619 2.3544 -1.4470 8 6 3.3108 5.0383 -0.9288 9 6 3.4145 5.3312 -2.2992 10 1 3.5599 4.5334 -3.0124 11 6 3.3291 6.6594 -2.7407 12 7 2.8211 7.5761 -1.9600 13 14 3.9416 7.1185 -4.4447 14 1 3.1841 6.3515 -5.4661 15 1 3.7410 8.5729 -4.6676 16 1 5.3870 6.7960 -4.5546 17 6 3.6551 6.0130 0.0262 18 6 3.5575 5.7347 1.3561 19 6 3.1159 4.4850 1.7927 20 6 3.0208 4.2155 3.1958 21 7 2.9455 4.0017 4.3090 22 1 -0.3635 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 2.1300 1.7289 2.0839 28 1 2.7624 8.4950 -2.2653 29 1 3.9981 6.9849 -0.2964 30 1 3.8247 6.4897 2.0805 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396224896.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:52 Heat of formation + Delta-G solvation = 30.677348 kcal Electronic energy + Delta-G solvation = -15619.094428 eV Core-core repulsion = 13083.031282 eV Total energy + Delta-G solvation = -2536.063146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07897 -37.30112 -37.23569 -35.50221 -33.38772 -32.12620 -29.23738 -27.88981 -25.05892 -23.75107 -22.83691 -21.00921 -19.55225 -19.29308 -17.36364 -16.53487 -16.35300 -16.05778 -15.29195 -15.00209 -14.76976 -14.48477 -14.21269 -14.14297 -13.81766 -13.56885 -13.40659 -13.07595 -12.82313 -12.76465 -12.42061 -12.25818 -12.17329 -11.83645 -11.64245 -11.50663 -11.23217 -11.08368 -10.04160 -9.13156 -8.90382 -8.53933 -6.50963 -0.06208 0.64658 0.93791 1.38539 1.42505 1.44482 1.53807 1.62997 1.96921 2.11901 2.17605 2.80962 3.51593 3.54059 3.73201 4.23805 4.36488 4.41328 4.46644 4.61550 4.80948 4.93225 4.94631 5.04027 5.10686 5.22970 5.34038 5.38636 5.44062 5.59891 5.76673 5.94810 6.03556 6.40837 6.58767 6.67277 6.86740 8.04580 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.007936 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.468060 B = 3527.200026 C = 4876.214718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.160 4.160 5 C 0.004 3.996 6 C -0.252 4.252 7 S 0.078 5.922 8 C 0.142 3.858 9 C -0.443 4.443 10 H 0.091 0.909 11 C 0.041 3.959 12 N -0.778 5.778 13 Si 0.984 3.016 14 H -0.256 1.256 15 H -0.262 1.262 16 H -0.255 1.255 17 C -0.201 4.201 18 C -0.024 4.024 19 C -0.192 4.192 20 C 0.301 3.699 21 N -0.522 5.522 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.133 0.867 28 H 0.303 0.697 29 H 0.124 0.876 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 -6.315 -5.269 8.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C -0.260 4.260 4 C -0.191 4.191 5 C -0.007 4.007 6 C -0.367 4.367 7 S 0.342 5.658 8 C 0.136 3.864 9 C -0.469 4.469 10 H 0.109 0.891 11 C -0.181 4.181 12 N -0.400 5.400 13 Si 0.804 3.196 14 H -0.180 1.180 15 H -0.186 1.186 16 H -0.179 1.179 17 C -0.224 4.224 18 C -0.045 4.045 19 C -0.201 4.201 20 C -0.008 4.008 21 N -0.202 5.202 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.151 0.849 28 H 0.115 0.885 29 H 0.141 0.859 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.477 -6.730 -5.070 8.554 hybrid contribution 0.347 1.098 0.725 1.361 sum -1.129 -5.632 -4.345 7.202 Atomic orbital electron populations 1.21765 0.93509 1.03023 1.01874 1.20286 0.96829 0.87747 1.04323 1.24416 1.04503 1.01439 0.95646 1.20795 1.06043 0.92961 0.99340 1.18959 0.97130 0.92794 0.91783 1.22703 1.17657 1.01113 0.95217 1.83321 1.70416 1.03854 1.08226 1.17422 0.86117 0.88450 0.94423 1.20051 1.39496 0.94411 0.92947 0.89109 1.26936 0.91700 0.95171 1.04284 1.69754 1.26435 1.04511 1.39277 0.85179 0.80132 0.78522 0.75801 1.18009 1.18609 1.17940 1.20692 1.09557 1.00876 0.91275 1.20346 0.94718 0.93366 0.96102 1.15272 1.25277 0.96924 0.82589 1.25954 0.90761 0.91462 0.92605 1.81056 1.15824 1.10574 1.12709 0.93317 0.92979 0.89642 0.88940 0.89293 0.84916 0.88525 0.85869 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.89 71.98 0.71 -2.37 16 2 C -0.05 -1.25 6.37 29.85 0.19 -1.06 16 3 C -0.14 -4.82 5.65 24.71 0.14 -4.68 16 4 C -0.16 -6.12 9.78 23.04 0.23 -5.90 16 5 C 0.00 0.17 5.99 -20.16 -0.12 0.05 16 6 C -0.25 -11.52 6.36 23.51 0.15 -11.38 16 7 S 0.08 2.94 22.79 -56.49 -1.29 1.65 16 8 C 0.14 6.88 5.59 -21.12 -0.12 6.76 16 9 C -0.44 -20.51 8.80 23.31 0.21 -20.30 16 10 H 0.09 4.04 7.75 -2.91 -0.02 4.02 16 11 C 0.04 1.76 5.12 85.35 0.44 2.20 16 12 N -0.78 -34.46 10.97 21.87 0.24 -34.22 16 13 Si 0.98 31.92 29.60 68.60 2.03 33.95 16 14 H -0.26 -8.14 7.11 99.48 0.71 -7.43 16 15 H -0.26 -7.99 7.11 99.48 0.71 -7.28 16 16 H -0.26 -8.17 7.11 99.48 0.71 -7.47 16 17 C -0.20 -9.46 8.59 22.41 0.19 -9.27 16 18 C -0.02 -1.05 9.61 22.12 0.21 -0.84 16 19 C -0.19 -8.57 5.82 -20.58 -0.12 -8.69 16 20 C 0.30 13.17 14.96 88.33 1.32 14.49 16 21 N -0.52 -23.21 18.54 19.00 0.35 -22.86 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.13 4.76 8.04 -2.91 -0.02 4.74 16 28 H 0.30 11.88 8.29 -92.71 -0.77 11.11 16 29 H 0.12 5.81 6.16 -2.91 -0.02 5.79 16 30 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -52.93 284.76 5.93 -47.00 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.17 Total: 15.47 kcal Atomic # 6 Polarization: -44.41 SS G_CDS: 3.43 Total: -40.99 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.59 Total: -57.08 kcal Atomic # 14 Polarization: 31.92 SS G_CDS: 2.03 Total: 33.95 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.29 Total: 1.65 kcal Total: -52.93 5.93 -47.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224896.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.674 kcal (2) G-P(sol) polarization free energy of solvation -52.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds