Wall clock time and date at job start Mon Mar 30 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38683 * 120.39803 * 90.91940 * 3 2 1 5 5 C 1.39741 * 121.15750 * 179.97438 * 4 3 2 6 6 S 1.76291 * 129.69430 * 180.02562 * 5 4 3 7 7 C 1.75423 * 91.57466 * 180.02562 * 6 5 4 8 8 C 1.32299 * 110.86927 * 359.97438 * 7 6 5 9 9 C 1.40376 * 121.09934 * 0.02670 * 5 4 3 10 10 C 1.42526 * 119.54127 * 359.97438 * 9 5 4 11 11 C 1.41693 * 119.97275 * 180.02562 * 10 9 5 12 12 O 1.21438 * 119.99677 * 182.62506 * 11 10 9 13 13 C 1.41605 * 120.04703 * 359.97438 * 10 9 5 14 14 C 1.40042 * 120.52042 * 180.29183 * 13 10 9 15 15 H 1.07995 * 120.00005 * 307.83199 * 14 13 10 16 16 C 1.40603 * 120.00035 * 127.83783 * 14 13 10 17 17 N 1.30460 * 120.00326 * 161.09334 * 16 14 13 18 18 Si 1.86806 * 119.99632 * 341.08841 * 16 14 13 19 19 H 1.48505 * 109.46762 * 93.58092 * 18 16 14 20 20 H 1.48495 * 109.47037 * 213.57633 * 18 16 14 21 21 H 1.48497 * 109.47594 * 333.58068 * 18 16 14 22 22 H 1.07993 * 119.42300 * 359.97438 * 4 3 2 23 23 H 1.08000 * 124.56783 * 179.97438 * 7 6 5 24 24 H 1.08002 * 122.03105 * 180.02562 * 8 7 6 25 25 H 1.07993 * 120.00665 * 2.63065 * 11 10 9 26 26 H 0.96996 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 0.0201 -1.1960 5 6 4.6670 0.0216 -1.2145 6 16 5.7749 0.0448 -2.5857 7 6 7.1692 0.0279 -1.5213 8 6 6.7937 0.0073 -0.2529 9 6 5.4080 0.0028 -0.0224 10 6 4.7257 -0.0176 1.2288 11 6 5.4645 -0.0361 2.4377 12 8 4.8847 -0.1016 3.5027 13 6 3.3101 -0.0182 1.2646 14 6 2.6296 -0.0320 2.4884 15 1 2.8687 -0.7790 3.2308 16 6 1.6350 0.9265 2.7507 17 7 0.7577 0.7154 3.6929 18 14 1.5699 2.5026 1.7499 19 1 0.6398 2.3244 0.6060 20 1 1.0906 3.6149 2.6090 21 1 2.9274 2.8212 1.2391 22 1 2.7268 0.0345 -2.1295 23 1 8.1959 0.0335 -1.8563 24 1 7.5090 -0.0053 0.5562 25 1 6.5432 0.0081 2.4121 26 1 0.0713 1.3766 3.8734 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396225160.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:20 Heat of formation + Delta-G solvation = 42.527778 kcal Electronic energy + Delta-G solvation = -15928.887583 eV Core-core repulsion = 13257.505216 eV Total energy + Delta-G solvation = -2671.382368 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.23732 -37.16573 -36.29711 -34.47432 -33.50214 -30.93043 -29.46155 -26.46540 -23.80111 -23.07585 -21.04464 -19.91808 -18.25186 -17.25470 -16.55186 -15.79524 -15.47461 -14.34958 -13.88362 -13.73354 -13.68668 -13.31737 -13.11769 -12.97297 -12.70534 -12.42754 -11.94345 -11.86128 -11.52134 -11.20660 -10.96938 -10.76867 -10.37259 -10.27566 -10.06006 -9.45666 -8.88124 -8.43891 -7.74815 -7.33684 -7.14419 -4.85237 0.78365 1.82542 2.02746 2.43460 2.55381 2.93311 2.97889 3.07827 3.18556 3.53078 3.73509 4.11767 4.26488 4.80916 4.90672 5.16305 5.28854 5.47122 5.83217 5.92383 6.09901 6.23933 6.40688 6.57874 6.68218 6.79825 6.94226 7.29651 7.42525 8.05113 8.13618 8.32937 8.39674 8.80710 9.68669 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.009504 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.801676 B = 2945.532269 C = 3680.128114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.279 3.721 3 C -0.101 4.101 4 C 0.023 3.977 5 C -0.242 4.242 6 S 0.044 5.956 7 C -0.179 4.179 8 C -0.137 4.137 9 C 0.039 3.961 10 C -0.269 4.269 11 C 0.361 3.639 12 O -0.472 6.472 13 C 0.136 3.864 14 C -0.375 4.375 15 H 0.123 0.877 16 C 0.086 3.914 17 N -0.756 5.756 18 Si 0.874 3.126 19 H -0.249 1.249 20 H -0.270 1.270 21 H -0.238 1.238 22 H 0.116 0.884 23 H 0.160 0.840 24 H 0.139 0.861 25 H 0.061 0.939 26 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.602 1.191 -8.445 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.034 4.034 3 C -0.107 4.107 4 C -0.002 4.002 5 C -0.356 4.356 6 S 0.306 5.694 7 C -0.314 4.314 8 C -0.169 4.169 9 C 0.031 3.969 10 C -0.275 4.275 11 C 0.227 3.773 12 O -0.352 6.352 13 C 0.129 3.871 14 C -0.400 4.400 15 H 0.141 0.859 16 C -0.139 4.139 17 N -0.377 5.377 18 Si 0.696 3.304 19 H -0.173 1.173 20 H -0.196 1.196 21 H -0.160 1.160 22 H 0.134 0.866 23 H 0.178 0.822 24 H 0.157 0.843 25 H 0.077 0.923 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.185 1.225 -9.282 11.802 hybrid contribution 0.599 0.674 1.009 1.354 sum 7.784 1.899 -8.273 11.517 Atomic orbital electron populations 1.81069 1.12223 1.11046 1.08344 1.25304 0.92532 0.92907 0.92680 1.17306 0.84003 1.15002 0.94427 1.20113 0.90970 0.93015 0.96061 1.21793 0.96271 1.22531 0.95031 1.83742 0.96391 1.80105 1.09113 1.25114 1.01947 1.07750 0.96560 1.20034 0.95186 1.04816 0.96868 1.18352 0.91483 0.94160 0.92919 1.19316 0.93358 1.22171 0.92606 1.21746 0.92958 0.74768 0.87820 1.90562 1.73730 1.37742 1.33116 1.18195 0.90015 0.88479 0.90401 1.19745 1.09104 1.10841 1.00321 0.85938 1.26333 0.91746 1.00939 0.94919 1.69486 1.08751 1.34643 1.24866 0.86807 0.82165 0.80360 0.81089 1.17287 1.19568 1.16034 0.86562 0.82238 0.84329 0.92316 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.63 17.94 41.83 0.75 -9.88 15 2 C 0.28 6.31 10.86 -22.47 -0.24 6.06 15 3 C -0.10 -2.17 4.79 -104.42 -0.50 -2.67 15 4 C 0.02 0.43 9.72 -38.86 -0.38 0.05 15 5 C -0.24 -4.29 6.47 -38.22 -0.25 -4.54 15 6 S 0.04 0.63 23.30 -107.50 -2.50 -1.88 15 7 C -0.18 -2.28 11.08 28.81 0.32 -1.96 15 8 C -0.14 -1.99 9.62 -40.67 -0.39 -2.38 15 9 C 0.04 0.72 5.85 -106.60 -0.62 0.09 15 10 C -0.27 -5.63 5.83 -105.64 -0.62 -6.25 15 11 C 0.36 7.32 10.95 32.05 0.35 7.67 15 12 O -0.47 -11.40 14.49 5.42 0.08 -11.32 15 13 C 0.14 3.16 4.53 -104.55 -0.47 2.69 15 14 C -0.37 -9.62 7.10 -38.01 -0.27 -9.89 15 15 H 0.12 3.44 6.90 -52.49 -0.36 3.07 15 16 C 0.09 2.19 4.72 -17.24 -0.08 2.11 15 17 N -0.76 -19.59 13.91 55.58 0.77 -18.82 15 18 Si 0.87 19.76 24.99 -169.99 -4.25 15.51 15 19 H -0.25 -5.63 5.87 56.52 0.33 -5.30 15 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 21 H -0.24 -5.32 7.11 56.52 0.40 -4.92 15 22 H 0.12 1.83 8.06 -52.49 -0.42 1.41 15 23 H 0.16 1.48 8.06 -52.49 -0.42 1.06 15 24 H 0.14 1.66 7.13 -52.49 -0.37 1.28 15 25 H 0.06 0.95 6.96 -52.49 -0.37 0.59 15 26 H 0.29 6.95 8.29 -40.82 -0.34 6.61 15 LS Contribution 251.62 15.07 3.79 3.79 Total: -1.00 -27.60 251.62 -5.66 -33.26 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: -1.15 Total: -1.65 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.15 Total: -9.01 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: 1.52 Total: -28.69 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.25 Total: 15.51 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.50 Total: -1.88 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.60 -5.66 -33.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225160.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.789 kcal (2) G-P(sol) polarization free energy of solvation -27.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds