Wall clock time and date at job start Mon Mar 30 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38683 * 120.39803 * 90.91940 * 3 2 1 5 5 C 1.39741 * 121.15750 * 179.97438 * 4 3 2 6 6 S 1.76291 * 129.69430 * 180.02562 * 5 4 3 7 7 C 1.75423 * 91.57466 * 180.02562 * 6 5 4 8 8 C 1.32299 * 110.86927 * 359.97438 * 7 6 5 9 9 C 1.40376 * 121.09934 * 0.02670 * 5 4 3 10 10 C 1.42526 * 119.54127 * 359.97438 * 9 5 4 11 11 C 1.41693 * 119.97275 * 180.02562 * 10 9 5 12 12 O 1.21438 * 119.99677 * 182.62506 * 11 10 9 13 13 C 1.41605 * 120.04703 * 359.97438 * 10 9 5 14 14 C 1.40042 * 120.52042 * 180.29183 * 13 10 9 15 15 H 1.07995 * 120.00005 * 307.83199 * 14 13 10 16 16 C 1.40603 * 120.00035 * 127.83783 * 14 13 10 17 17 N 1.30460 * 120.00326 * 161.09334 * 16 14 13 18 18 Si 1.86806 * 119.99632 * 341.08841 * 16 14 13 19 19 H 1.48505 * 109.46762 * 93.58092 * 18 16 14 20 20 H 1.48495 * 109.47037 * 213.57633 * 18 16 14 21 21 H 1.48497 * 109.47594 * 333.58068 * 18 16 14 22 22 H 1.07993 * 119.42300 * 359.97438 * 4 3 2 23 23 H 1.08000 * 124.56783 * 179.97438 * 7 6 5 24 24 H 1.08002 * 122.03105 * 180.02562 * 8 7 6 25 25 H 1.07993 * 120.00665 * 2.63065 * 11 10 9 26 26 H 0.96996 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 0.0201 -1.1960 5 6 4.6670 0.0216 -1.2145 6 16 5.7749 0.0448 -2.5857 7 6 7.1692 0.0279 -1.5213 8 6 6.7937 0.0073 -0.2529 9 6 5.4080 0.0028 -0.0224 10 6 4.7257 -0.0176 1.2288 11 6 5.4645 -0.0361 2.4377 12 8 4.8847 -0.1016 3.5027 13 6 3.3101 -0.0182 1.2646 14 6 2.6296 -0.0320 2.4884 15 1 2.8687 -0.7790 3.2308 16 6 1.6350 0.9265 2.7507 17 7 0.7577 0.7154 3.6929 18 14 1.5699 2.5026 1.7499 19 1 0.6398 2.3244 0.6060 20 1 1.0906 3.6149 2.6090 21 1 2.9274 2.8212 1.2391 22 1 2.7268 0.0345 -2.1295 23 1 8.1959 0.0335 -1.8563 24 1 7.5090 -0.0053 0.5562 25 1 6.5432 0.0081 2.4121 26 1 0.0713 1.3766 3.8734 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396225160.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:20 Heat of formation + Delta-G solvation = 25.468579 kcal Electronic energy + Delta-G solvation = -15929.627326 eV Core-core repulsion = 13257.505216 eV Total energy + Delta-G solvation = -2672.122110 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.80367 -38.81630 -37.90688 -36.14854 -35.11823 -32.57851 -30.94554 -28.11005 -25.24770 -24.69290 -22.47416 -21.41847 -19.94545 -18.85750 -17.90614 -17.38941 -17.04860 -15.97925 -15.46325 -15.35664 -15.12969 -15.05297 -14.63142 -14.55652 -14.35486 -13.92086 -13.61549 -13.47514 -13.10277 -12.91818 -12.54614 -12.26416 -12.13993 -11.57696 -11.52617 -11.24683 -10.38883 -10.06533 -9.23817 -9.05950 -8.55184 -6.66824 -0.64502 0.19462 0.78644 1.11435 1.13452 1.15674 1.20706 1.32648 1.70421 1.78123 1.92654 2.40250 2.52838 3.17426 3.24635 3.82375 4.06944 4.08343 4.38758 4.62288 4.72660 4.88881 4.97753 5.04174 5.20824 5.26713 5.58800 5.67543 5.83823 6.19616 6.39719 6.49903 6.64431 7.22049 7.96220 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.009504 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.801676 B = 2945.532269 C = 3680.128114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.288 3.712 3 C -0.135 4.135 4 C 0.044 3.956 5 C -0.259 4.259 6 S 0.099 5.901 7 C -0.145 4.145 8 C -0.162 4.162 9 C 0.042 3.958 10 C -0.285 4.285 11 C 0.364 3.636 12 O -0.516 6.516 13 C 0.143 3.857 14 C -0.425 4.425 15 H 0.079 0.921 16 C 0.060 3.940 17 N -0.813 5.813 18 Si 0.910 3.090 19 H -0.252 1.252 20 H -0.261 1.261 21 H -0.234 1.234 22 H 0.147 0.853 23 H 0.208 0.792 24 H 0.169 0.831 25 H 0.119 0.881 26 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.791 1.723 -12.287 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.024 4.024 3 C -0.142 4.142 4 C 0.019 3.981 5 C -0.373 4.373 6 S 0.361 5.639 7 C -0.280 4.280 8 C -0.192 4.192 9 C 0.032 3.968 10 C -0.290 4.290 11 C 0.231 3.769 12 O -0.398 6.398 13 C 0.136 3.864 14 C -0.453 4.453 15 H 0.097 0.903 16 C -0.159 4.159 17 N -0.438 5.438 18 Si 0.729 3.271 19 H -0.176 1.176 20 H -0.186 1.186 21 H -0.157 1.157 22 H 0.165 0.835 23 H 0.225 0.775 24 H 0.186 0.814 25 H 0.135 0.865 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.394 1.758 -13.153 17.491 hybrid contribution -0.201 0.399 1.790 1.845 sum 11.192 2.157 -11.364 16.095 Atomic orbital electron populations 1.81047 1.13019 1.12539 1.09240 1.25581 0.92872 0.92060 0.91876 1.17359 0.83476 1.18276 0.95040 1.20456 0.91776 0.89785 0.96040 1.22354 0.96702 1.20699 0.97566 1.83783 0.95104 1.78481 1.06482 1.25763 1.03728 1.03060 0.95401 1.20193 0.93481 1.06724 0.98842 1.18662 0.93694 0.92755 0.91666 1.19684 0.92820 1.21836 0.94694 1.22560 0.95218 0.72432 0.86658 1.90583 1.75194 1.39304 1.34694 1.18435 0.91316 0.86434 0.90196 1.19383 1.12177 1.12750 1.00983 0.90288 1.26766 0.91306 1.02417 0.95414 1.69536 1.10578 1.35826 1.27836 0.86288 0.81979 0.78599 0.80215 1.17577 1.18554 1.15653 0.83514 0.77545 0.81361 0.86462 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -23.43 17.94 19.00 0.34 -23.08 15 2 C 0.29 13.33 10.86 88.33 0.96 14.29 15 3 C -0.13 -5.77 4.79 -19.73 -0.09 -5.87 15 4 C 0.04 1.49 9.72 22.74 0.22 1.71 15 5 C -0.26 -8.06 6.47 23.15 0.15 -7.91 15 6 S 0.10 2.14 23.30 -56.49 -1.32 0.82 15 7 C -0.14 -2.55 11.08 66.75 0.74 -1.81 15 8 C -0.16 -3.66 9.62 21.75 0.21 -3.45 15 9 C 0.04 1.37 5.85 -21.14 -0.12 1.24 15 10 C -0.28 -11.60 5.83 -20.53 -0.12 -11.72 15 11 C 0.36 14.31 10.95 68.67 0.75 15.06 15 12 O -0.52 -25.78 14.49 -3.52 -0.05 -25.83 15 13 C 0.14 6.78 4.53 -19.82 -0.09 6.69 15 14 C -0.43 -23.40 7.10 23.29 0.17 -23.23 15 15 H 0.08 4.91 6.90 -2.91 -0.02 4.89 15 16 C 0.06 3.27 4.72 85.47 0.40 3.68 15 17 N -0.81 -45.76 13.91 21.94 0.31 -45.46 15 18 Si 0.91 41.98 24.99 68.60 1.71 43.69 15 19 H -0.25 -11.56 5.87 99.48 0.58 -10.98 15 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 21 H -0.23 -10.39 7.11 99.48 0.71 -9.68 15 22 H 0.15 4.08 8.06 -2.91 -0.02 4.06 15 23 H 0.21 1.84 8.06 -2.91 -0.02 1.82 15 24 H 0.17 2.82 7.13 -2.91 -0.02 2.80 15 25 H 0.12 3.25 6.96 -2.91 -0.02 3.23 15 26 H 0.30 15.21 8.29 -92.71 -0.77 14.44 15 Total: -1.00 -66.55 251.62 5.29 -61.26 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: 1.12 Total: -0.09 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 3.17 Total: -11.31 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: 0.65 Total: -68.54 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.71 Total: 43.69 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.32 Total: 0.82 kcal Total: -66.55 5.29 -61.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225160.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.733 kcal (2) G-P(sol) polarization free energy of solvation -66.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds