Wall clock time and date at job start Mon Mar 30 2020 06:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47086 * 2 1 4 4 C 1.37276 * 122.46789 * 89.98127 * 3 2 1 5 5 C 1.39745 * 124.87419 * 359.97438 * 4 3 2 6 6 H 1.07999 * 120.00160 * 0.02562 * 5 4 3 7 7 C 1.40328 * 119.99755 * 180.02562 * 5 4 3 8 8 N 1.30668 * 119.99863 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00055 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46755 * 90.00144 * 9 7 5 11 11 H 1.48499 * 109.47293 * 210.00153 * 9 7 5 12 12 H 1.48504 * 109.47104 * 330.00398 * 9 7 5 13 13 S 1.75471 * 110.24660 * 180.24935 * 4 3 2 14 14 C 1.76022 * 91.74847 * 359.69591 * 13 4 3 15 15 C 1.39497 * 130.27655 * 180.02562 * 14 13 4 16 16 C 1.37724 * 121.34617 * 180.27791 * 15 14 13 17 17 C 1.38359 * 121.09137 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.27633 * 359.96906 * 17 16 15 19 19 C 1.43205 * 120.32217 * 180.02562 * 18 17 16 20 20 N 3.17594 * 85.58726 * 257.36980 * 2 1 3 21 21 C 1.39092 * 122.46809 * 269.99936 * 3 2 1 22 22 H 1.09003 * 109.46811 * 299.99798 * 1 2 3 23 23 H 1.09001 * 109.47310 * 59.99427 * 1 2 3 24 24 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46811 * 240.00202 * 2 1 3 26 26 H 1.09000 * 109.47479 * 120.00045 * 2 1 3 27 27 H 0.97005 * 119.99882 * 179.97438 * 8 7 5 28 28 H 1.07996 * 119.32480 * 0.27804 * 15 14 13 29 29 H 1.08000 * 119.45468 * 180.02562 * 16 15 14 30 30 H 1.08004 * 119.85823 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2776 2.1157 1.1582 5 6 2.0973 1.6085 2.4478 6 1 1.7402 0.5986 2.5858 7 6 2.3802 2.4113 3.5634 8 7 2.8118 3.6333 3.3963 9 14 2.1385 1.7336 5.2873 10 1 3.3944 1.0870 5.7454 11 1 1.7873 2.8425 6.2104 12 1 1.0417 0.7325 5.2763 13 16 2.8426 3.7349 0.7867 14 6 2.7426 3.4310 -0.9441 15 6 3.0365 4.2632 -2.0244 16 6 2.8844 3.8317 -3.3234 17 6 2.4331 2.5542 -3.6037 18 6 2.1242 1.6789 -2.5716 19 6 1.6575 0.3563 -2.8606 20 7 1.2856 -0.6924 -3.0899 21 6 2.2812 2.1248 -1.1735 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.0070 4.1884 4.1675 28 1 3.3904 5.2664 -1.8382 29 1 3.1214 4.5016 -4.1367 30 1 2.3217 2.2364 -4.6299 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396225438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:21 Heat of formation + Delta-G solvation = 35.208576 kcal Electronic energy + Delta-G solvation = -16035.902122 eV Core-core repulsion = 13500.035465 eV Total energy + Delta-G solvation = -2535.866658 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.50032 -35.71247 -35.57225 -33.93715 -30.96043 -30.01897 -29.20331 -25.75837 -23.40867 -22.35371 -21.44254 -19.14505 -17.98596 -17.24456 -15.81640 -15.28555 -14.53498 -14.29407 -13.96888 -13.43012 -13.09608 -12.87012 -12.58243 -12.36895 -12.18952 -11.91069 -11.76632 -11.68681 -11.35500 -11.27482 -10.99392 -10.71662 -10.48668 -10.39322 -9.81812 -9.69602 -9.47929 -9.19645 -8.41660 -7.57015 -7.43139 -6.53689 -4.85473 1.49301 2.14069 2.68884 2.72782 2.79559 3.07213 3.37449 3.40730 3.49098 3.69806 3.81782 4.49254 4.90720 4.93800 5.60076 5.75180 5.96185 6.05385 6.14006 6.34302 6.39863 6.41681 6.64144 6.73067 6.78990 6.86100 7.00340 7.07775 7.14542 7.26893 7.38118 7.49743 7.68199 7.83109 8.07172 8.20892 8.37937 9.37886 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024304 B = 0.008178 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.807517 B = 3423.186892 C = 4472.127594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 C -0.325 4.325 4 C 0.063 3.937 5 C -0.354 4.354 6 H 0.106 0.894 7 C 0.051 3.949 8 N -0.759 5.759 9 Si 0.939 3.061 10 H -0.260 1.260 11 H -0.269 1.269 12 H -0.254 1.254 13 S 0.143 5.857 14 C -0.276 4.276 15 C -0.014 4.014 16 C -0.218 4.218 17 C -0.036 4.036 18 C -0.110 4.110 19 C 0.288 3.712 20 N -0.477 5.477 21 C 0.072 3.928 22 H 0.052 0.948 23 H 0.041 0.959 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.306 0.694 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 2.715 0.399 2.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.331 4.331 4 C -0.057 4.057 5 C -0.388 4.388 6 H 0.124 0.876 7 C -0.173 4.173 8 N -0.383 5.383 9 Si 0.761 3.239 10 H -0.185 1.185 11 H -0.193 1.193 12 H -0.177 1.177 13 S 0.404 5.596 14 C -0.390 4.390 15 C -0.037 4.037 16 C -0.239 4.239 17 C -0.059 4.059 18 C -0.116 4.116 19 C -0.023 4.023 20 N -0.155 5.155 21 C 0.062 3.938 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.528 2.538 1.036 2.792 hybrid contribution -0.330 -0.897 -0.080 0.959 sum 0.198 1.641 0.956 1.909 Atomic orbital electron populations 1.21695 0.97349 0.99206 1.01192 1.19741 0.94042 0.93238 1.00143 1.18202 1.26065 0.98838 0.90013 1.21355 0.94062 0.94584 0.95719 1.19549 1.30333 1.00400 0.88507 0.87607 1.26455 0.92570 0.94268 1.04056 1.68600 1.27192 1.07122 1.35427 0.85727 0.80527 0.79862 0.77794 1.18495 1.19308 1.17690 1.84873 1.70930 1.13587 0.90160 1.23525 1.14977 0.98448 1.02066 1.20265 0.95099 0.97144 0.91211 1.20185 1.11443 0.96595 0.95659 1.20535 0.95848 0.93128 0.96421 1.16682 1.14602 0.87626 0.92684 1.25700 0.92244 0.92707 0.91645 1.81089 1.12580 1.11959 1.09878 1.18459 0.93225 0.91788 0.90301 0.92888 0.93944 0.94639 0.93413 0.92920 0.88059 0.87652 0.87113 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.78 37.16 0.36 -2.40 16 2 C -0.03 -0.70 5.13 -27.88 -0.14 -0.84 16 3 C -0.33 -7.60 5.19 -104.65 -0.54 -8.14 16 4 C 0.06 1.49 6.12 -39.37 -0.24 1.25 16 5 C -0.35 -7.97 8.83 -38.23 -0.34 -8.30 16 6 H 0.11 2.28 6.68 -52.49 -0.35 1.93 16 7 C 0.05 1.05 5.50 -17.26 -0.09 0.95 16 8 N -0.76 -16.01 10.58 55.57 0.59 -15.43 16 9 Si 0.94 15.52 29.56 -169.99 -5.03 10.50 16 10 H -0.26 -4.29 7.11 56.52 0.40 -3.88 16 11 H -0.27 -4.32 7.11 56.52 0.40 -3.92 16 12 H -0.25 -4.20 7.11 56.52 0.40 -3.80 16 13 S 0.14 3.18 20.14 -107.50 -2.16 1.02 16 14 C -0.28 -6.02 6.47 -38.29 -0.25 -6.27 16 15 C -0.01 -0.27 10.00 -39.30 -0.39 -0.66 16 16 C -0.22 -3.74 9.97 -39.72 -0.40 -4.14 16 17 C -0.04 -0.65 9.72 -39.33 -0.38 -1.03 16 18 C -0.11 -2.29 5.95 -103.95 -0.62 -2.91 16 19 C 0.29 6.07 12.11 -22.47 -0.27 5.80 16 20 N -0.48 -10.30 17.87 41.84 0.75 -9.55 16 21 C 0.07 1.65 5.99 -104.95 -0.63 1.02 16 22 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 23 H 0.04 0.88 7.84 -51.93 -0.41 0.48 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 1.06 5.06 -51.93 -0.26 0.80 16 26 H 0.05 1.11 6.90 -51.93 -0.36 0.75 16 27 H 0.31 5.73 8.29 -40.82 -0.34 5.39 16 28 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 275.47 15.07 4.15 4.15 Total: -1.00 -24.45 275.47 -8.27 -32.72 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.63 Total: 2.27 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -3.94 Total: -25.68 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 1.34 Total: -24.98 kcal Atomic # 14 Polarization: 15.52 SS G_CDS: -5.03 Total: 10.50 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.16 Total: 1.02 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -24.45 -8.27 -32.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.926 kcal (2) G-P(sol) polarization free energy of solvation -24.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds