Wall clock time and date at job start Mon Mar 30 2020 06:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47086 * 2 1 4 4 C 1.37276 * 122.46789 * 89.98127 * 3 2 1 5 5 C 1.39745 * 124.87419 * 359.97438 * 4 3 2 6 6 H 1.07999 * 120.00160 * 0.02562 * 5 4 3 7 7 C 1.40328 * 119.99755 * 180.02562 * 5 4 3 8 8 N 1.30668 * 119.99863 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00055 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46755 * 90.00144 * 9 7 5 11 11 H 1.48499 * 109.47293 * 210.00153 * 9 7 5 12 12 H 1.48504 * 109.47104 * 330.00398 * 9 7 5 13 13 S 1.75471 * 110.24660 * 180.24935 * 4 3 2 14 14 C 1.76022 * 91.74847 * 359.69591 * 13 4 3 15 15 C 1.39497 * 130.27655 * 180.02562 * 14 13 4 16 16 C 1.37724 * 121.34617 * 180.27791 * 15 14 13 17 17 C 1.38359 * 121.09137 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.27633 * 359.96906 * 17 16 15 19 19 C 1.43205 * 120.32217 * 180.02562 * 18 17 16 20 20 N 3.17594 * 85.58726 * 257.36980 * 2 1 3 21 21 C 1.39092 * 122.46809 * 269.99936 * 3 2 1 22 22 H 1.09003 * 109.46811 * 299.99798 * 1 2 3 23 23 H 1.09001 * 109.47310 * 59.99427 * 1 2 3 24 24 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46811 * 240.00202 * 2 1 3 26 26 H 1.09000 * 109.47479 * 120.00045 * 2 1 3 27 27 H 0.97005 * 119.99882 * 179.97438 * 8 7 5 28 28 H 1.07996 * 119.32480 * 0.27804 * 15 14 13 29 29 H 1.08000 * 119.45468 * 180.02562 * 16 15 14 30 30 H 1.08004 * 119.85823 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2776 2.1157 1.1582 5 6 2.0973 1.6085 2.4478 6 1 1.7402 0.5986 2.5858 7 6 2.3802 2.4113 3.5634 8 7 2.8118 3.6333 3.3963 9 14 2.1385 1.7336 5.2873 10 1 3.3944 1.0870 5.7454 11 1 1.7873 2.8425 6.2104 12 1 1.0417 0.7325 5.2763 13 16 2.8426 3.7349 0.7867 14 6 2.7426 3.4310 -0.9441 15 6 3.0365 4.2632 -2.0244 16 6 2.8844 3.8317 -3.3234 17 6 2.4331 2.5542 -3.6037 18 6 2.1242 1.6789 -2.5716 19 6 1.6575 0.3563 -2.8606 20 7 1.2856 -0.6924 -3.0899 21 6 2.2812 2.1248 -1.1735 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.0070 4.1884 4.1675 28 1 3.3904 5.2664 -1.8382 29 1 3.1214 4.5016 -4.1367 30 1 2.3217 2.2364 -4.6299 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396225438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:21 Heat of formation + Delta-G solvation = 25.556267 kcal Electronic energy + Delta-G solvation = -16036.320678 eV Core-core repulsion = 13500.035465 eV Total energy + Delta-G solvation = -2536.285213 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08421 -37.32580 -37.20330 -35.52627 -32.58750 -31.57074 -30.82000 -27.35846 -25.02528 -23.95419 -23.02419 -20.75702 -19.59586 -18.86028 -17.31853 -16.87730 -16.10441 -15.85444 -15.46065 -15.03794 -14.67407 -14.50114 -14.16472 -13.98735 -13.80008 -13.50888 -13.26546 -13.12446 -12.95315 -12.88424 -12.57724 -12.06077 -12.05434 -11.88329 -11.44999 -11.34891 -11.02161 -10.89260 -10.00766 -9.19131 -8.97985 -8.20607 -6.52093 -0.08108 0.59407 1.31713 1.35455 1.42883 1.52709 1.79147 1.85255 1.97578 2.13001 2.20395 2.87631 3.30071 3.33884 4.19438 4.28960 4.31069 4.47449 4.65331 4.71446 4.81556 4.85915 5.00288 5.10628 5.15774 5.30642 5.38419 5.46233 5.55989 5.72519 5.79956 5.87598 6.08372 6.26843 6.43198 6.55176 6.73716 7.86780 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024304 B = 0.008178 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.807517 B = 3423.186892 C = 4472.127594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.027 4.027 3 C -0.353 4.353 4 C 0.037 3.963 5 C -0.381 4.381 6 H 0.105 0.895 7 C 0.020 3.980 8 N -0.780 5.780 9 Si 1.005 2.995 10 H -0.257 1.257 11 H -0.257 1.257 12 H -0.255 1.255 13 S 0.128 5.872 14 C -0.297 4.297 15 C -0.017 4.017 16 C -0.200 4.200 17 C -0.027 4.027 18 C -0.129 4.129 19 C 0.294 3.706 20 N -0.493 5.493 21 C 0.048 3.952 22 H 0.049 0.951 23 H 0.030 0.970 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.316 0.684 28 H 0.131 0.869 29 H 0.156 0.844 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 3.559 -0.375 3.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.066 4.066 3 C -0.359 4.359 4 C -0.083 4.083 5 C -0.415 4.415 6 H 0.123 0.877 7 C -0.202 4.202 8 N -0.405 5.405 9 Si 0.823 3.177 10 H -0.181 1.181 11 H -0.181 1.181 12 H -0.179 1.179 13 S 0.390 5.610 14 C -0.412 4.412 15 C -0.040 4.040 16 C -0.220 4.220 17 C -0.050 4.050 18 C -0.135 4.135 19 C -0.016 4.016 20 N -0.171 5.171 21 C 0.038 3.962 22 H 0.068 0.932 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.130 0.870 28 H 0.149 0.851 29 H 0.173 0.827 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.728 3.392 0.240 3.478 hybrid contribution -0.347 -1.073 -0.023 1.128 sum 0.381 2.319 0.216 2.360 Atomic orbital electron populations 1.21577 0.96395 0.99949 1.00398 1.19679 0.94828 0.92745 0.99394 1.18451 1.27391 0.99523 0.90537 1.21643 0.94963 0.95280 0.96438 1.19776 1.31659 1.00900 0.89118 0.87727 1.27252 0.91687 0.94249 1.06998 1.68618 1.27108 1.07914 1.36904 0.84786 0.80288 0.79331 0.73285 1.18124 1.18119 1.17868 1.84619 1.71448 1.13528 0.91449 1.23747 1.16231 0.98888 1.02298 1.20698 0.94200 0.97935 0.91175 1.20715 1.08569 0.96609 0.96089 1.21008 0.93803 0.92856 0.97328 1.16925 1.15768 0.88075 0.92736 1.25817 0.91839 0.92741 0.91219 1.81077 1.13299 1.12286 1.10478 1.18719 0.93999 0.92454 0.91058 0.93206 0.95046 0.93028 0.94296 0.93280 0.87004 0.85135 0.82666 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.78 71.98 0.70 -4.46 16 2 C -0.03 -1.20 5.13 29.85 0.15 -1.04 16 3 C -0.35 -16.96 5.19 -19.89 -0.10 -17.07 16 4 C 0.04 1.80 6.12 22.41 0.14 1.94 16 5 C -0.38 -17.66 8.83 23.14 0.20 -17.46 16 6 H 0.10 4.67 6.68 -2.91 -0.02 4.66 16 7 C 0.02 0.82 5.50 85.37 0.47 1.29 16 8 N -0.78 -33.23 10.58 21.90 0.23 -33.00 16 9 Si 1.00 31.42 29.56 68.60 2.03 33.44 16 10 H -0.26 -7.84 7.11 99.48 0.71 -7.13 16 11 H -0.26 -7.52 7.11 99.48 0.71 -6.81 16 12 H -0.26 -7.97 7.11 99.48 0.71 -7.26 16 13 S 0.13 5.83 20.14 -56.49 -1.14 4.69 16 14 C -0.30 -12.88 6.47 23.10 0.15 -12.73 16 15 C -0.02 -0.60 10.00 22.45 0.22 -0.38 16 16 C -0.20 -5.99 9.97 22.18 0.22 -5.77 16 17 C -0.03 -0.89 9.72 22.43 0.22 -0.67 16 18 C -0.13 -5.24 5.95 -19.43 -0.12 -5.36 16 19 C 0.29 12.24 12.11 88.33 1.07 13.31 16 20 N -0.49 -21.08 17.87 19.01 0.34 -20.74 16 21 C 0.05 2.18 5.99 -20.08 -0.12 2.06 16 22 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 1.77 5.06 -2.39 -0.01 1.75 16 26 H 0.05 2.15 6.90 -2.39 -0.02 2.14 16 27 H 0.32 11.78 8.29 -92.70 -0.77 11.01 16 28 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 29 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 30 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -53.39 275.47 5.85 -47.54 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.18 Total: 14.39 kcal Atomic # 6 Polarization: -49.54 SS G_CDS: 3.21 Total: -46.33 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.57 Total: -53.73 kcal Atomic # 14 Polarization: 31.42 SS G_CDS: 2.03 Total: 33.44 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.14 Total: 4.69 kcal Total: -53.39 5.85 -47.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.101 kcal (2) G-P(sol) polarization free energy of solvation -53.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds