Wall clock time and date at job start Mon Mar 30 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47233 * 2 1 4 4 C 1.33575 * 122.69123 * 269.98135 * 3 2 1 5 5 C 1.43206 * 124.34643 * 359.97438 * 4 3 2 6 6 N 3.69809 * 96.37477 * 288.33070 * 2 1 3 7 7 S 1.75253 * 111.29986 * 180.02562 * 4 3 2 8 8 C 1.75987 * 92.32893 * 0.02562 * 7 4 3 9 9 C 1.40554 * 130.12618 * 180.02562 * 8 7 4 10 10 C 1.35620 * 120.87360 * 179.97438 * 9 8 7 11 11 C 1.41229 * 120.16018 * 0.03981 * 10 9 8 12 12 C 1.41265 * 120.04817 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00172 * 334.33849 * 12 11 10 14 14 C 1.39860 * 120.00339 * 154.34440 * 12 11 10 15 15 N 1.30894 * 119.99749 * 343.22295 * 14 12 11 16 16 Si 1.86800 * 120.00381 * 163.22066 * 14 12 11 17 17 H 1.48499 * 109.47152 * 59.99873 * 16 14 12 18 18 H 1.48493 * 109.47482 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47204 * 300.00359 * 16 14 12 20 20 C 1.39817 * 119.90096 * 0.21171 * 11 10 9 21 21 C 1.40355 * 109.77614 * 359.97438 * 8 7 4 22 22 H 1.09002 * 109.47392 * 59.99345 * 1 2 3 23 23 H 1.08997 * 109.47466 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46823 * 299.99485 * 1 2 3 25 25 H 1.09000 * 109.46823 * 240.00515 * 2 1 3 26 26 H 1.08995 * 109.47598 * 120.00320 * 2 1 3 27 27 H 1.08006 * 119.56425 * 359.97438 * 9 8 7 28 28 H 1.08000 * 119.92150 * 180.02562 * 10 9 8 29 29 H 0.97001 * 119.99932 * 179.97438 * 15 14 12 30 30 H 1.07998 * 120.01234 * 179.74478 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2732 2.1009 -1.1242 5 6 2.0879 1.5738 -2.4427 6 7 1.9406 1.1559 -3.4887 7 16 2.8465 3.7204 -0.7780 8 6 2.7546 3.4589 0.9599 9 6 3.0610 4.3249 2.0237 10 6 2.9188 3.9232 3.3112 11 6 2.4586 2.6198 3.6011 12 6 2.3109 2.2040 4.9430 13 1 2.9028 2.6655 5.7197 14 6 1.3983 1.1945 5.2660 15 7 0.4600 0.8639 4.4153 16 14 1.5184 0.3181 6.9113 17 1 1.3654 1.3051 8.0102 18 1 0.4438 -0.7021 7.0084 19 1 2.8421 -0.3458 7.0231 20 6 2.1531 1.7404 2.5579 21 6 2.2940 2.1590 1.2208 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.4143 5.3236 1.8130 28 1 3.1583 4.6015 4.1168 29 1 -0.1727 0.1635 4.6392 30 1 1.8050 0.7419 2.7776 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396225900.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:10 Heat of formation + Delta-G solvation = 45.666308 kcal Electronic energy + Delta-G solvation = -15829.017185 eV Core-core repulsion = 13293.604009 eV Total energy + Delta-G solvation = -2535.413176 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.65677 -36.76624 -35.28596 -33.72201 -31.39548 -29.63132 -29.04045 -25.63997 -24.29111 -22.47597 -21.18510 -19.36230 -17.91975 -17.46037 -15.74833 -15.31772 -14.99461 -14.29727 -13.89992 -13.54529 -13.52859 -13.16273 -12.70907 -12.59649 -12.53488 -12.17387 -11.95103 -11.64994 -11.41875 -11.25405 -11.09841 -10.76777 -10.61999 -10.28251 -10.05728 -9.90317 -9.70738 -9.28350 -8.43724 -7.62993 -6.96202 -6.88521 -4.54052 1.11088 1.87398 2.47937 2.76622 2.90169 2.97706 2.98293 3.03512 3.26113 3.65923 3.79030 4.27831 4.36055 5.20970 5.34805 5.42567 5.68791 5.78011 5.86758 6.07874 6.17827 6.21419 6.36199 6.58052 6.64470 6.71229 6.85766 6.97818 7.21950 7.30836 7.48200 7.69947 7.74566 7.91649 8.33409 8.62322 8.63643 9.98300 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.006893 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.122905 B = 4060.944007 C = 5002.984663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C 0.014 3.986 4 C -0.153 4.153 5 C 0.298 3.702 6 N -0.436 5.436 7 S 0.061 5.939 8 C -0.217 4.217 9 C -0.069 4.069 10 C -0.164 4.164 11 C 0.103 3.897 12 C -0.454 4.454 13 H 0.082 0.918 14 C 0.076 3.924 15 N -0.786 5.786 16 Si 0.910 3.090 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.128 4.128 21 C -0.058 4.058 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.285 0.715 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 -0.127 -1.481 1.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.006 4.006 4 C -0.270 4.270 5 C -0.017 4.017 6 N -0.114 5.114 7 S 0.324 5.676 8 C -0.332 4.332 9 C -0.092 4.092 10 C -0.185 4.185 11 C 0.099 3.901 12 C -0.483 4.483 13 H 0.100 0.900 14 C -0.144 4.144 15 N -0.411 5.411 16 Si 0.734 3.266 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.150 4.150 21 C -0.063 4.063 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.104 0.322 -4.093 4.251 hybrid contribution -0.421 -1.270 1.970 2.381 sum 0.682 -0.948 -2.123 2.423 Atomic orbital electron populations 1.21686 0.94024 1.01604 1.02706 1.20403 0.96732 0.91512 1.02811 1.20178 0.93792 0.95915 0.90670 1.18889 1.18633 1.00955 0.88545 1.24583 0.92634 0.92931 0.91580 1.81186 1.10778 1.08687 1.10774 1.83380 1.73558 1.09047 1.01616 1.21992 1.17707 0.99403 0.94105 1.19674 1.01158 0.96950 0.91371 1.20878 1.06682 0.96492 0.94464 1.17422 0.89342 0.89782 0.93540 1.19528 1.18940 1.16403 0.93455 0.89989 1.25910 0.93511 0.95751 0.99179 1.69800 1.10544 1.24614 1.36138 0.86321 0.79135 0.79476 0.81647 1.18906 1.20217 1.18688 1.21229 1.05556 1.00405 0.87852 1.18735 1.02511 0.92024 0.93004 0.93322 0.92518 0.90930 0.91764 0.89660 0.88272 0.87522 0.90445 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.89 37.16 0.37 -1.84 16 2 C -0.08 -1.23 5.78 -27.88 -0.16 -1.39 16 3 C 0.01 0.26 5.27 -103.56 -0.55 -0.28 16 4 C -0.15 -2.78 6.15 -39.29 -0.24 -3.02 16 5 C 0.30 5.29 14.65 -22.47 -0.33 4.96 16 6 N -0.44 -8.00 18.54 41.84 0.78 -7.22 16 7 S 0.06 1.09 23.16 -107.50 -2.49 -1.40 16 8 C -0.22 -4.46 6.51 -37.91 -0.25 -4.71 16 9 C -0.07 -1.38 9.98 -39.65 -0.40 -1.78 16 10 C -0.16 -3.49 9.70 -39.38 -0.38 -3.87 16 11 C 0.10 2.41 5.55 -107.02 -0.59 1.82 16 12 C -0.45 -10.63 9.03 -37.83 -0.34 -10.97 16 13 H 0.08 1.83 7.90 -52.48 -0.41 1.41 16 14 C 0.08 1.69 5.14 -17.34 -0.09 1.60 16 15 N -0.79 -18.08 10.97 55.54 0.61 -17.47 16 16 Si 0.91 16.87 29.59 -169.99 -5.03 11.84 16 17 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 18 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 C -0.13 -2.93 8.42 -38.02 -0.32 -3.25 16 21 C -0.06 -1.22 6.00 -105.43 -0.63 -1.86 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.06 0.98 7.45 -51.93 -0.39 0.59 16 26 H 0.08 1.39 7.56 -51.93 -0.39 1.00 16 27 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 28 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.28 5.99 8.30 -40.82 -0.34 5.65 16 30 H 0.13 3.01 5.73 -52.49 -0.30 2.71 16 LS Contribution 283.12 15.07 4.27 4.27 Total: -1.00 -23.88 283.12 -8.52 -32.40 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -2.74 Total: 2.17 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -3.91 Total: -24.59 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 1.38 Total: -24.69 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.40 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -23.88 -8.52 -32.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225900.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.069 kcal (2) G-P(sol) polarization free energy of solvation -23.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds