Wall clock time and date at job start Mon Mar 30 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47233 * 2 1 4 4 C 1.33575 * 122.69123 * 269.98135 * 3 2 1 5 5 C 1.43206 * 124.34643 * 359.97438 * 4 3 2 6 6 N 3.69809 * 96.37477 * 288.33070 * 2 1 3 7 7 S 1.75253 * 111.29986 * 180.02562 * 4 3 2 8 8 C 1.75987 * 92.32893 * 0.02562 * 7 4 3 9 9 C 1.40554 * 130.12618 * 180.02562 * 8 7 4 10 10 C 1.35620 * 120.87360 * 179.97438 * 9 8 7 11 11 C 1.41229 * 120.16018 * 0.03981 * 10 9 8 12 12 C 1.41265 * 120.04817 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00172 * 334.33849 * 12 11 10 14 14 C 1.39860 * 120.00339 * 154.34440 * 12 11 10 15 15 N 1.30894 * 119.99749 * 343.22295 * 14 12 11 16 16 Si 1.86800 * 120.00381 * 163.22066 * 14 12 11 17 17 H 1.48499 * 109.47152 * 59.99873 * 16 14 12 18 18 H 1.48493 * 109.47482 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47204 * 300.00359 * 16 14 12 20 20 C 1.39817 * 119.90096 * 0.21171 * 11 10 9 21 21 C 1.40355 * 109.77614 * 359.97438 * 8 7 4 22 22 H 1.09002 * 109.47392 * 59.99345 * 1 2 3 23 23 H 1.08997 * 109.47466 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46823 * 299.99485 * 1 2 3 25 25 H 1.09000 * 109.46823 * 240.00515 * 2 1 3 26 26 H 1.08995 * 109.47598 * 120.00320 * 2 1 3 27 27 H 1.08006 * 119.56425 * 359.97438 * 9 8 7 28 28 H 1.08000 * 119.92150 * 180.02562 * 10 9 8 29 29 H 0.97001 * 119.99932 * 179.97438 * 15 14 12 30 30 H 1.07998 * 120.01234 * 179.74478 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2732 2.1009 -1.1242 5 6 2.0879 1.5738 -2.4427 6 7 1.9406 1.1559 -3.4887 7 16 2.8465 3.7204 -0.7780 8 6 2.7546 3.4589 0.9599 9 6 3.0610 4.3249 2.0237 10 6 2.9188 3.9232 3.3112 11 6 2.4586 2.6198 3.6011 12 6 2.3109 2.2040 4.9430 13 1 2.9028 2.6655 5.7197 14 6 1.3983 1.1945 5.2660 15 7 0.4600 0.8639 4.4153 16 14 1.5184 0.3181 6.9113 17 1 1.3654 1.3051 8.0102 18 1 0.4438 -0.7021 7.0084 19 1 2.8421 -0.3458 7.0231 20 6 2.1531 1.7404 2.5579 21 6 2.2940 2.1590 1.2208 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.4143 5.3236 1.8130 28 1 3.1583 4.6015 4.1168 29 1 -0.1727 0.1635 4.6392 30 1 1.8050 0.7419 2.7776 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396225900.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:10 Heat of formation + Delta-G solvation = 37.206044 kcal Electronic energy + Delta-G solvation = -15829.384050 eV Core-core repulsion = 13293.604009 eV Total energy + Delta-G solvation = -2535.780041 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22428 -38.28074 -36.79530 -35.34182 -32.82971 -31.26593 -30.62397 -27.31828 -25.70288 -24.01908 -22.78944 -20.90036 -19.45788 -19.07503 -17.32677 -16.90656 -16.51697 -15.76795 -15.40049 -15.10605 -14.94519 -14.63635 -14.21475 -14.12063 -14.01391 -13.67674 -13.47489 -13.08833 -12.88736 -12.83075 -12.61488 -12.23868 -11.98552 -11.75077 -11.62806 -11.48112 -11.30947 -10.91254 -10.03485 -9.26195 -8.61571 -8.42519 -6.27308 -0.42060 0.39738 0.83927 1.19029 1.30517 1.45527 1.52886 1.56297 1.80315 2.19010 2.24725 2.69716 2.79542 3.64537 3.81736 4.09472 4.24701 4.40500 4.43198 4.61797 4.76695 4.84584 4.96031 5.05398 5.14388 5.27468 5.33086 5.34787 5.56912 5.67194 5.81205 6.04545 6.22689 6.27366 6.62758 6.92047 6.93608 8.34764 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025821 B = 0.006893 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.122905 B = 4060.944007 C = 5002.984663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 C 0.004 3.996 4 C -0.151 4.151 5 C 0.308 3.692 6 N -0.439 5.439 7 S 0.111 5.889 8 C -0.233 4.233 9 C -0.069 4.069 10 C -0.174 4.174 11 C 0.075 3.925 12 C -0.487 4.487 13 H 0.083 0.917 14 C 0.040 3.960 15 N -0.815 5.815 16 Si 0.976 3.024 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.262 1.262 20 C -0.149 4.149 21 C -0.069 4.069 22 H 0.050 0.950 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.121 0.879 29 H 0.289 0.711 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 -0.013 -2.240 2.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C -0.016 4.016 4 C -0.269 4.269 5 C -0.007 4.007 6 N -0.117 5.117 7 S 0.375 5.625 8 C -0.348 4.348 9 C -0.091 4.091 10 C -0.195 4.195 11 C 0.072 3.928 12 C -0.516 4.516 13 H 0.101 0.899 14 C -0.176 4.176 15 N -0.440 5.440 16 Si 0.797 3.203 17 H -0.185 1.185 18 H -0.196 1.196 19 H -0.186 1.186 20 C -0.171 4.171 21 C -0.074 4.074 22 H 0.069 0.931 23 H 0.098 0.902 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.100 0.900 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.338 0.452 -4.869 5.069 hybrid contribution -0.465 -1.222 2.049 2.431 sum 0.874 -0.770 -2.819 3.050 Atomic orbital electron populations 1.21625 0.93335 1.02798 1.01581 1.20438 0.97227 0.90283 1.03288 1.20269 0.94366 0.97063 0.89895 1.18980 1.17997 1.01337 0.88568 1.24345 0.92445 0.92723 0.91210 1.81211 1.10808 1.08792 1.10895 1.83173 1.72631 1.08125 0.98576 1.22426 1.16790 0.99296 0.96329 1.19997 1.00194 0.98171 0.90774 1.21103 1.06576 0.96087 0.95716 1.17774 0.90176 0.90931 0.93969 1.19775 1.20073 1.18006 0.93751 0.89896 1.26621 0.92780 0.95898 1.02312 1.69857 1.11150 1.25200 1.37802 0.85331 0.79004 0.78323 0.77628 1.18546 1.19606 1.18642 1.21137 1.07165 1.00053 0.88788 1.18956 1.02311 0.92902 0.93235 0.93094 0.90231 0.93242 0.90232 0.90125 0.85242 0.86107 0.89985 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.89 71.98 0.71 -3.38 16 2 C -0.07 -2.33 5.78 29.85 0.17 -2.16 16 3 C 0.00 0.13 5.27 -19.18 -0.10 0.03 16 4 C -0.15 -5.22 6.15 22.46 0.14 -5.08 16 5 C 0.31 10.22 14.65 88.33 1.29 11.52 16 6 N -0.44 -15.04 18.54 19.01 0.35 -14.69 16 7 S 0.11 3.72 23.16 -56.49 -1.31 2.41 16 8 C -0.23 -9.32 6.51 23.35 0.15 -9.17 16 9 C -0.07 -2.68 9.98 22.23 0.22 -2.46 16 10 C -0.17 -7.40 9.70 22.40 0.22 -7.18 16 11 C 0.08 3.61 5.55 -21.42 -0.12 3.49 16 12 C -0.49 -23.41 9.03 23.41 0.21 -23.20 16 13 H 0.08 3.80 7.90 -2.91 -0.02 3.77 16 14 C 0.04 1.83 5.14 85.23 0.44 2.27 16 15 N -0.81 -38.48 10.97 21.81 0.24 -38.24 16 16 Si 0.98 34.84 29.59 68.60 2.03 36.87 16 17 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 18 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 19 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 20 C -0.15 -7.01 8.42 23.28 0.20 -6.82 16 21 C -0.07 -2.92 6.00 -20.39 -0.12 -3.04 16 22 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.08 2.28 7.45 -2.39 -0.02 2.26 16 26 H 0.08 2.64 7.56 -2.39 -0.02 2.63 16 27 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.29 12.46 8.30 -92.71 -0.77 11.69 16 30 H 0.12 5.63 5.73 -2.91 -0.02 5.61 16 Total: -1.00 -50.41 283.12 5.90 -44.52 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.17 Total: 14.32 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 3.41 Total: -45.18 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.59 Total: -52.93 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.31 Total: 2.41 kcal Total: -50.41 5.90 -44.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225900.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.722 kcal (2) G-P(sol) polarization free energy of solvation -50.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds