Wall clock time and date at job start Mon Mar 30 2020 06:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47333 * 2 1 4 4 C 1.37645 * 119.56444 * 90.00075 * 3 2 1 5 5 C 1.41697 * 120.94767 * 179.71896 * 4 3 2 6 6 C 1.40529 * 128.68228 * 179.97438 * 5 4 3 7 7 C 1.33797 * 115.54491 * 180.02562 * 6 5 4 8 8 C 1.43204 * 124.68846 * 179.97438 * 7 6 5 9 9 N 8.54033 * 107.41858 * 28.16478 * 2 1 3 10 10 S 1.75484 * 110.62034 * 0.02562 * 7 6 5 11 11 C 1.39747 * 118.74788 * 0.02562 * 5 4 3 12 12 C 1.42177 * 119.79159 * 0.02562 * 11 5 4 13 13 C 1.40895 * 120.11714 * 179.97438 * 12 11 5 14 14 H 1.08002 * 119.99922 * 334.44824 * 13 12 11 15 15 C 1.39961 * 120.00293 * 154.44366 * 13 12 11 16 16 N 1.30852 * 119.99316 * 342.59346 * 15 13 12 17 17 Si 1.86797 * 120.00130 * 162.58893 * 15 13 12 18 18 H 1.48500 * 109.46855 * 90.00526 * 17 15 13 19 19 H 1.48501 * 109.47005 * 210.00290 * 17 15 13 20 20 H 1.48499 * 109.47065 * 330.00088 * 17 15 13 21 21 C 1.37965 * 119.56732 * 269.73363 * 3 2 1 22 22 H 1.08999 * 109.47422 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46996 * 299.99686 * 1 2 3 24 24 H 1.08994 * 109.47327 * 59.99470 * 1 2 3 25 25 H 1.09000 * 109.46576 * 240.00328 * 2 1 3 26 26 H 1.09003 * 109.47170 * 120.00756 * 2 1 3 27 27 H 1.08009 * 119.52710 * 359.74516 * 4 3 2 28 28 H 1.08001 * 122.22943 * 359.97438 * 6 5 4 29 29 H 0.97005 * 119.99725 * 179.97438 * 16 15 13 30 30 H 1.08001 * 120.06197 * 0.25112 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2588 2.0610 1.1972 5 6 2.7366 3.3946 1.2314 6 6 3.0210 4.1973 2.3493 7 6 3.4631 5.4303 2.0768 8 6 3.8100 6.4084 3.0636 9 7 4.0866 7.1838 3.8463 10 16 3.5578 5.6837 0.3429 11 6 2.9756 4.0542 0.0228 12 6 2.7369 3.3828 -1.2075 13 6 2.9749 4.0414 -2.4301 14 1 2.9328 5.1195 -2.4798 15 6 3.2660 3.2987 -3.5801 16 7 3.6517 2.0528 -3.4740 17 14 3.1040 4.0860 -5.2663 18 1 4.3953 4.7133 -5.6458 19 1 2.7458 3.0472 -6.2652 20 1 2.0419 5.1232 -5.2283 21 6 2.2646 2.0607 -1.2000 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 2.0699 1.5394 2.1239 28 1 2.8904 3.8428 3.3611 29 1 3.8531 1.5379 -4.2710 30 1 2.0828 1.5459 -2.1318 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396225920.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:43 Heat of formation + Delta-G solvation = 36.045099 kcal Electronic energy + Delta-G solvation = -15619.192737 eV Core-core repulsion = 13083.362354 eV Total energy + Delta-G solvation = -2535.830383 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18655 -38.11603 -36.61293 -35.87002 -33.48776 -31.08731 -29.68582 -27.35583 -25.20752 -24.57805 -22.53719 -21.01674 -19.67494 -18.79001 -17.31797 -16.90803 -16.25648 -15.93759 -15.33291 -15.24171 -14.69056 -14.46959 -14.28762 -14.15092 -13.96046 -13.70371 -13.27142 -13.16823 -12.81267 -12.73984 -12.53108 -12.21407 -11.90536 -11.78641 -11.55121 -11.44069 -11.07002 -10.95706 -10.08724 -9.03582 -8.73128 -8.47529 -6.32842 -0.40752 0.42019 0.85746 1.28657 1.31896 1.40464 1.51036 1.57968 1.86856 2.19172 2.25333 2.73124 2.82082 3.55741 4.15108 4.33855 4.38035 4.58916 4.70611 4.71787 4.83529 4.99896 5.01785 5.15659 5.20012 5.27989 5.39049 5.51596 5.59346 5.73182 5.92833 6.17591 6.25551 6.30252 6.61265 6.81963 6.90646 8.26927 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.008444 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.848164 B = 3315.322974 C = 4930.851609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.058 4.058 4 C -0.190 4.190 5 C -0.073 4.073 6 C -0.026 4.026 7 C -0.153 4.153 8 C 0.311 3.689 9 N -0.445 5.445 10 S 0.111 5.889 11 C -0.218 4.218 12 C 0.112 3.888 13 C -0.488 4.488 14 H 0.074 0.926 15 C 0.044 3.956 16 N -0.809 5.809 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.263 1.263 20 H -0.260 1.260 21 C -0.175 4.175 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.173 0.827 29 H 0.292 0.708 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 -2.981 2.797 5.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 C -0.059 4.059 4 C -0.213 4.213 5 C -0.080 4.080 6 C -0.064 4.064 7 C -0.272 4.272 8 C -0.004 4.004 9 N -0.123 5.123 10 S 0.378 5.622 11 C -0.335 4.335 12 C 0.106 3.894 13 C -0.517 4.517 14 H 0.093 0.907 15 C -0.173 4.173 16 N -0.434 5.434 17 Si 0.793 3.207 18 H -0.189 1.189 19 H -0.187 1.187 20 H -0.184 1.184 21 C -0.199 4.199 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.148 0.852 28 H 0.190 0.810 29 H 0.103 0.897 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.491 -0.670 2.976 3.938 hybrid contribution -0.309 -1.060 -0.512 1.217 sum -2.800 -1.730 2.464 4.112 Atomic orbital electron populations 1.21664 0.94131 1.02030 1.01520 1.20489 0.96680 0.91946 1.02270 1.19688 0.97182 0.96294 0.92712 1.20486 1.10463 0.92958 0.97387 1.18111 1.03195 0.96085 0.90560 1.20377 0.95008 0.90430 1.00595 1.19309 1.16793 0.95863 0.95190 1.24346 0.92177 0.91971 0.91867 1.81220 1.11101 1.09838 1.10174 1.83735 1.70470 1.13125 0.94906 1.23186 1.14355 0.98101 0.97832 1.17254 0.89492 0.92577 0.90045 1.19656 1.43524 0.94836 0.93667 0.90742 1.26591 0.91201 0.95017 1.04500 1.69846 1.30005 1.10098 1.33420 0.85343 0.79770 0.79241 0.76386 1.18908 1.18711 1.18393 1.21067 1.06068 0.95810 0.96968 0.90815 0.92387 0.94206 0.92376 0.90109 0.85172 0.81001 0.89745 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.89 71.98 0.71 -2.94 16 2 C -0.08 -2.39 6.04 29.85 0.18 -2.21 16 3 C -0.06 -2.29 5.10 -20.07 -0.10 -2.39 16 4 C -0.19 -7.10 9.70 22.98 0.22 -6.87 16 5 C -0.07 -2.87 5.86 -21.50 -0.13 -3.00 16 6 C -0.03 -0.86 10.01 21.82 0.22 -0.64 16 7 C -0.15 -5.20 6.18 22.51 0.14 -5.06 16 8 C 0.31 10.22 15.76 88.33 1.39 11.61 16 9 N -0.45 -15.32 18.54 19.00 0.35 -14.96 16 10 S 0.11 4.34 22.83 -56.49 -1.29 3.05 16 11 C -0.22 -9.80 6.38 23.61 0.15 -9.65 16 12 C 0.11 5.55 5.59 -21.13 -0.12 5.43 16 13 C -0.49 -24.44 8.82 23.34 0.21 -24.23 16 14 H 0.07 3.67 7.76 -2.91 -0.02 3.64 16 15 C 0.04 2.07 5.13 85.26 0.44 2.51 16 16 N -0.81 -38.97 10.98 21.83 0.24 -38.73 16 17 Si 0.97 35.94 29.59 68.60 2.03 37.97 16 18 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 19 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 21 C -0.18 -8.25 8.30 22.73 0.19 -8.06 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 26 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 27 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 28 H 0.17 4.26 8.06 -2.91 -0.02 4.23 16 29 H 0.29 12.66 8.30 -92.70 -0.77 11.90 16 30 H 0.11 5.43 6.19 -2.91 -0.02 5.42 16 Total: -1.00 -53.11 284.95 6.00 -47.11 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.17 Total: 11.08 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 3.50 Total: -45.50 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.59 Total: -53.69 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.29 Total: 3.05 kcal Total: -53.11 6.00 -47.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225920.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.153 kcal (2) G-P(sol) polarization free energy of solvation -53.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds