Wall clock time and date at job start Mon Mar 30 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46855 * 2 1 4 4 C 1.37554 * 119.75245 * 264.99613 * 3 2 1 5 5 C 1.38642 * 120.13270 * 179.97438 * 4 3 2 6 6 C 1.37379 * 120.24819 * 0.02562 * 5 4 3 7 7 C 1.40812 * 120.46463 * 0.02562 * 6 5 4 8 8 C 1.46528 * 128.61061 * 179.97438 * 7 6 5 9 9 C 1.39665 * 123.34537 * 359.97438 * 8 7 6 10 10 H 1.08000 * 119.99535 * 142.74975 * 9 8 7 11 11 C 1.40428 * 120.00143 * 322.74882 * 9 8 7 12 12 N 1.30609 * 120.00099 * 338.85090 * 11 9 8 13 13 Si 1.86807 * 120.00059 * 158.85225 * 11 9 8 14 14 H 1.48499 * 109.46969 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46800 * 119.99619 * 13 11 9 16 16 H 1.48489 * 109.47037 * 239.99919 * 13 11 9 17 17 C 1.38652 * 113.30226 * 180.02562 * 8 7 6 18 18 C 1.43198 * 124.62495 * 179.97438 * 17 8 7 19 19 N 7.10861 * 95.90162 * 58.91553 * 2 1 3 20 20 S 1.75164 * 110.73883 * 359.97438 * 17 8 7 21 21 C 1.39336 * 119.07371 * 359.72078 * 7 6 5 22 22 H 1.09006 * 109.46547 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47087 * 299.99836 * 1 2 3 24 24 H 1.08996 * 109.46787 * 60.00794 * 1 2 3 25 25 H 1.09005 * 109.47291 * 119.99507 * 2 1 3 26 26 H 1.08992 * 109.47540 * 239.99947 * 2 1 3 27 27 H 1.08006 * 119.93332 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.87876 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.76679 * 180.02562 * 6 5 4 30 30 H 0.97006 * 120.00373 * 178.46317 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3580 2.0298 -1.1897 5 6 2.8204 3.3368 -1.1989 6 6 2.9564 4.0311 -0.0213 7 6 2.6292 3.4248 1.2068 8 6 2.7053 3.9922 2.5556 9 6 3.1409 5.2930 2.8179 10 1 2.6710 5.8727 3.5986 11 6 4.1899 5.8470 2.0664 12 7 5.0225 5.0658 1.4322 13 14 4.3946 7.7016 1.9740 14 1 3.3301 8.3576 2.7750 15 1 5.7248 8.0803 2.5148 16 1 4.2920 8.1409 0.5593 17 6 2.3028 3.1089 3.5457 18 6 2.2810 3.4106 4.9454 19 7 2.2609 3.6507 6.0556 20 16 1.8247 1.5739 2.8506 21 6 2.1599 2.1128 1.2104 22 1 -0.3632 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 2.2526 1.4888 -2.1185 28 1 3.0753 3.8107 -2.1352 29 1 3.3169 5.0490 -0.0375 30 1 5.7337 5.4488 0.8951 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396225944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:16 Heat of formation + Delta-G solvation = 41.137719 kcal Electronic energy + Delta-G solvation = -16001.955008 eV Core-core repulsion = 13466.345458 eV Total energy + Delta-G solvation = -2535.609551 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.86700 -35.95371 -34.77999 -33.33263 -32.67519 -29.10156 -28.54328 -26.58431 -23.49055 -22.66699 -21.27840 -19.96087 -17.81769 -16.56161 -16.01618 -15.28827 -14.76899 -14.57322 -13.74400 -13.59280 -13.25830 -13.04218 -12.82729 -12.48769 -12.02745 -11.87132 -11.67211 -11.56110 -11.52672 -11.27336 -11.08094 -10.80541 -10.76541 -10.44639 -10.10984 -9.88117 -9.54369 -9.28787 -8.44376 -7.52938 -7.29980 -6.74216 -4.79602 1.57529 2.01823 2.59586 2.67731 2.87525 2.94165 3.15365 3.21350 3.65088 4.27482 4.40085 4.47792 5.00241 5.18816 5.29231 5.48683 5.62925 5.66786 5.85129 5.89174 6.01673 6.13546 6.21380 6.38341 6.46866 6.54330 6.65675 6.78070 6.98533 7.11263 7.19965 7.49636 7.64275 7.92801 8.20604 8.33503 8.97438 9.65960 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018987 B = 0.009511 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.319615 B = 2943.198320 C = 4214.553032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.075 4.075 4 C -0.108 4.108 5 C -0.151 4.151 6 C -0.037 4.037 7 C -0.047 4.047 8 C 0.177 3.823 9 C -0.421 4.421 10 H 0.095 0.905 11 C 0.080 3.920 12 N -0.752 5.752 13 Si 0.908 3.092 14 H -0.253 1.253 15 H -0.268 1.268 16 H -0.264 1.264 17 C -0.343 4.343 18 C 0.332 3.668 19 N -0.521 5.521 20 S 0.039 5.961 21 C -0.104 4.104 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 -3.258 -9.584 10.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.081 4.081 4 C -0.128 4.128 5 C -0.173 4.173 6 C -0.057 4.057 7 C -0.056 4.056 8 C 0.165 3.835 9 C -0.452 4.452 10 H 0.113 0.887 11 C -0.145 4.145 12 N -0.374 5.374 13 Si 0.730 3.270 14 H -0.177 1.177 15 H -0.193 1.193 16 H -0.189 1.189 17 C -0.463 4.463 18 C 0.024 3.976 19 N -0.203 5.203 20 S 0.298 5.702 21 C -0.220 4.220 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.934 -4.227 -7.265 8.903 hybrid contribution 0.886 2.042 -1.159 2.510 sum -2.048 -2.185 -8.424 8.941 Atomic orbital electron populations 1.21728 0.95091 1.01074 1.02424 1.20473 0.96025 0.93089 1.02231 1.19116 1.02411 0.95609 0.90979 1.20632 1.00795 0.95253 0.96168 1.20771 1.03797 0.95150 0.97557 1.21045 0.94710 0.99693 0.90249 1.19292 0.99679 0.92424 0.94157 1.17369 0.87336 0.91548 0.87223 1.19292 1.13111 0.97241 1.15532 0.88711 1.26106 0.94213 1.01423 0.92756 1.69776 1.09546 1.38647 1.19394 0.86229 0.79902 0.81146 0.79728 1.17660 1.19283 1.18860 1.18669 1.40898 0.98767 0.87953 1.24347 0.90507 0.91779 0.90972 1.81035 1.17272 1.09965 1.12045 1.82843 1.76057 1.15633 0.95635 1.22409 1.05232 0.97578 0.96779 0.92930 0.92084 0.92814 0.91306 0.91507 0.86758 0.86888 0.86113 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.89 37.16 0.37 -1.50 16 2 C -0.08 -1.15 5.85 -27.88 -0.16 -1.31 16 3 C -0.08 -1.32 5.17 -104.21 -0.54 -1.86 16 4 C -0.11 -1.75 9.64 -39.68 -0.38 -2.14 16 5 C -0.15 -2.61 10.01 -39.75 -0.40 -3.00 16 6 C -0.04 -0.76 8.39 -38.92 -0.33 -1.08 16 7 C -0.05 -1.06 5.55 -105.18 -0.58 -1.64 16 8 C 0.18 4.36 5.42 -105.87 -0.57 3.79 16 9 C -0.42 -10.25 8.51 -38.23 -0.33 -10.58 16 10 H 0.09 2.34 7.90 -52.49 -0.41 1.92 16 11 C 0.08 1.77 3.99 -17.25 -0.07 1.70 16 12 N -0.75 -16.88 10.77 55.57 0.60 -16.28 16 13 Si 0.91 16.60 29.61 -169.99 -5.03 11.57 16 14 H -0.25 -4.73 7.11 56.52 0.40 -4.33 16 15 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 16 H -0.26 -4.59 7.11 56.52 0.40 -4.18 16 17 C -0.34 -8.39 6.31 -37.51 -0.24 -8.62 16 18 C 0.33 8.41 15.19 -22.47 -0.34 8.07 16 19 N -0.52 -13.38 18.54 41.84 0.78 -12.61 16 20 S 0.04 0.82 22.44 -107.50 -2.41 -1.59 16 21 C -0.10 -2.17 6.27 -38.51 -0.24 -2.41 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.01 7.71 -51.93 -0.40 0.61 16 26 H 0.07 0.81 8.04 -51.93 -0.42 0.40 16 27 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 28 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.12 2.47 5.90 -52.49 -0.31 2.16 16 30 H 0.29 5.85 8.29 -40.82 -0.34 5.51 16 LS Contribution 281.28 15.07 4.24 4.24 Total: -1.00 -26.19 281.28 -8.44 -34.62 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -2.79 Total: 0.65 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -3.81 Total: -20.60 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 1.37 Total: -28.89 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.41 Total: -1.59 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.19 -8.44 -34.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.760 kcal (2) G-P(sol) polarization free energy of solvation -26.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds