Wall clock time and date at job start Mon Mar 30 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46855 * 2 1 4 4 C 1.37554 * 119.75245 * 264.99613 * 3 2 1 5 5 C 1.38642 * 120.13270 * 179.97438 * 4 3 2 6 6 C 1.37379 * 120.24819 * 0.02562 * 5 4 3 7 7 C 1.40812 * 120.46463 * 0.02562 * 6 5 4 8 8 C 1.46528 * 128.61061 * 179.97438 * 7 6 5 9 9 C 1.39665 * 123.34537 * 359.97438 * 8 7 6 10 10 H 1.08000 * 119.99535 * 142.74975 * 9 8 7 11 11 C 1.40428 * 120.00143 * 322.74882 * 9 8 7 12 12 N 1.30609 * 120.00099 * 338.85090 * 11 9 8 13 13 Si 1.86807 * 120.00059 * 158.85225 * 11 9 8 14 14 H 1.48499 * 109.46969 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46800 * 119.99619 * 13 11 9 16 16 H 1.48489 * 109.47037 * 239.99919 * 13 11 9 17 17 C 1.38652 * 113.30226 * 180.02562 * 8 7 6 18 18 C 1.43198 * 124.62495 * 179.97438 * 17 8 7 19 19 N 7.10861 * 95.90162 * 58.91553 * 2 1 3 20 20 S 1.75164 * 110.73883 * 359.97438 * 17 8 7 21 21 C 1.39336 * 119.07371 * 359.72078 * 7 6 5 22 22 H 1.09006 * 109.46547 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47087 * 299.99836 * 1 2 3 24 24 H 1.08996 * 109.46787 * 60.00794 * 1 2 3 25 25 H 1.09005 * 109.47291 * 119.99507 * 2 1 3 26 26 H 1.08992 * 109.47540 * 239.99947 * 2 1 3 27 27 H 1.08006 * 119.93332 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.87876 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.76679 * 180.02562 * 6 5 4 30 30 H 0.97006 * 120.00373 * 178.46317 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3580 2.0298 -1.1897 5 6 2.8204 3.3368 -1.1989 6 6 2.9564 4.0311 -0.0213 7 6 2.6292 3.4248 1.2068 8 6 2.7053 3.9922 2.5556 9 6 3.1409 5.2930 2.8179 10 1 2.6710 5.8727 3.5986 11 6 4.1899 5.8470 2.0664 12 7 5.0225 5.0658 1.4322 13 14 4.3946 7.7016 1.9740 14 1 3.3301 8.3576 2.7750 15 1 5.7248 8.0803 2.5148 16 1 4.2920 8.1409 0.5593 17 6 2.3028 3.1089 3.5457 18 6 2.2810 3.4106 4.9454 19 7 2.2609 3.6507 6.0556 20 16 1.8247 1.5739 2.8506 21 6 2.1599 2.1128 1.2104 22 1 -0.3632 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 2.2526 1.4888 -2.1185 28 1 3.0753 3.8107 -2.1352 29 1 3.3169 5.0490 -0.0375 30 1 5.7337 5.4488 0.8951 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396225944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:16 Heat of formation + Delta-G solvation = 29.596408 kcal Electronic energy + Delta-G solvation = -16002.455477 eV Core-core repulsion = 13466.345458 eV Total energy + Delta-G solvation = -2536.110020 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34434 -37.68242 -36.60776 -34.77230 -34.20960 -30.65754 -29.88808 -28.36574 -24.77128 -24.24200 -22.71414 -21.54067 -19.45355 -18.22253 -17.63690 -16.84114 -16.21691 -16.02671 -15.23121 -15.00398 -14.71787 -14.65669 -14.22899 -14.03380 -13.69335 -13.53511 -13.47675 -13.09611 -12.92651 -12.78092 -12.47035 -12.20326 -12.13996 -11.81763 -11.58594 -11.43453 -11.12819 -10.92712 -9.97764 -9.16444 -8.97406 -8.36221 -6.61412 -0.03915 0.56954 0.95927 1.16636 1.34827 1.47559 1.51774 1.58804 2.11917 2.45299 2.46795 2.82685 3.25922 3.73237 3.98271 4.12871 4.37459 4.45448 4.60619 4.67248 4.72125 4.78516 4.93797 5.10547 5.13701 5.18243 5.32242 5.42000 5.50659 5.67103 5.74777 5.85234 6.05916 6.26130 6.42083 6.54519 7.00523 7.99720 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018987 B = 0.009511 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.319615 B = 2943.198320 C = 4214.553032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.078 4.078 4 C -0.095 4.095 5 C -0.141 4.141 6 C -0.058 4.058 7 C -0.081 4.081 8 C 0.161 3.839 9 C -0.449 4.449 10 H 0.076 0.924 11 C 0.054 3.946 12 N -0.767 5.767 13 Si 0.973 3.027 14 H -0.265 1.265 15 H -0.263 1.263 16 H -0.241 1.241 17 C -0.384 4.384 18 C 0.330 3.670 19 N -0.545 5.545 20 S 0.053 5.947 21 C -0.120 4.120 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.161 0.839 28 H 0.149 0.851 29 H 0.113 0.887 30 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -3.731 -13.034 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.084 4.084 4 C -0.115 4.115 5 C -0.162 4.162 6 C -0.078 4.078 7 C -0.089 4.089 8 C 0.149 3.851 9 C -0.480 4.480 10 H 0.095 0.905 11 C -0.170 4.170 12 N -0.388 5.388 13 Si 0.792 3.208 14 H -0.189 1.189 15 H -0.188 1.188 16 H -0.164 1.164 17 C -0.503 4.503 18 C 0.023 3.977 19 N -0.229 5.229 20 S 0.312 5.688 21 C -0.235 4.235 22 H 0.094 0.906 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.116 0.884 27 H 0.178 0.822 28 H 0.167 0.833 29 H 0.131 0.869 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.666 -4.716 -10.722 12.013 hybrid contribution 0.842 2.152 -0.230 2.322 sum -1.825 -2.564 -10.953 11.396 Atomic orbital electron populations 1.21711 0.94012 1.02474 1.01827 1.20566 0.96862 0.90979 1.03341 1.19624 1.01457 0.97147 0.90176 1.21166 0.98228 0.94850 0.97288 1.21206 1.01815 0.95476 0.97656 1.21125 0.96060 0.99865 0.90731 1.19371 1.02028 0.93627 0.93910 1.17784 0.86874 0.91781 0.88667 1.19448 1.14414 0.97813 1.16286 0.90548 1.26738 0.93051 1.05389 0.91839 1.69756 1.09584 1.40561 1.18938 0.85290 0.79346 0.75522 0.80677 1.18889 1.18788 1.16393 1.19052 1.42680 1.00991 0.87587 1.24722 0.90172 0.91338 0.91425 1.80982 1.18651 1.10683 1.12538 1.82501 1.76469 1.13690 0.96188 1.22674 1.05913 0.97442 0.97474 0.90581 0.94310 0.91795 0.92235 0.88357 0.82187 0.83319 0.86916 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.89 71.98 0.71 -2.53 16 2 C -0.08 -2.02 5.85 29.85 0.17 -1.84 16 3 C -0.08 -2.53 5.17 -19.59 -0.10 -2.64 16 4 C -0.10 -2.66 9.64 22.20 0.21 -2.45 16 5 C -0.14 -4.34 10.01 22.16 0.22 -4.12 16 6 C -0.06 -2.30 8.39 22.70 0.19 -2.11 16 7 C -0.08 -3.71 5.55 -20.22 -0.11 -3.82 16 8 C 0.16 8.26 5.42 -20.67 -0.11 8.14 16 9 C -0.45 -22.84 8.51 23.15 0.20 -22.65 16 10 H 0.08 4.02 7.90 -2.91 -0.02 4.00 16 11 C 0.05 2.40 3.99 85.41 0.34 2.74 16 12 N -0.77 -34.29 10.77 21.91 0.24 -34.06 16 13 Si 0.97 33.77 29.61 68.60 2.03 35.80 16 14 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 15 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 16 H -0.24 -7.44 7.11 99.48 0.71 -6.73 16 17 C -0.38 -19.68 6.31 23.61 0.15 -19.53 16 18 C 0.33 17.62 15.19 88.33 1.34 18.96 16 19 N -0.54 -29.35 18.54 19.00 0.35 -28.99 16 20 S 0.05 2.30 22.44 -56.49 -1.27 1.03 16 21 C -0.12 -4.95 6.27 22.96 0.14 -4.80 16 22 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 1.62 7.71 -2.38 -0.02 1.60 16 26 H 0.10 1.88 8.04 -2.39 -0.02 1.86 16 27 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.11 4.54 5.90 -2.91 -0.02 4.52 16 30 H 0.31 11.90 8.29 -92.70 -0.77 11.13 16 Total: -1.00 -59.29 281.28 5.88 -53.41 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.17 Total: 9.45 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 3.36 Total: -36.64 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: 0.59 Total: -63.05 kcal Atomic # 14 Polarization: 33.77 SS G_CDS: 2.03 Total: 35.80 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.27 Total: 1.03 kcal Total: -59.29 5.88 -53.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.004 kcal (2) G-P(sol) polarization free energy of solvation -59.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds