Wall clock time and date at job start Mon Mar 30 2020 06:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46894 * 2 1 4 4 C 1.40586 * 119.77450 * 269.97735 * 3 2 1 5 5 C 1.45577 * 128.40292 * 0.02562 * 4 3 2 6 6 C 1.31790 * 114.95293 * 179.97438 * 5 4 3 7 7 S 1.75219 * 111.52569 * 359.97438 * 6 5 4 8 8 C 1.40325 * 119.89429 * 179.97438 * 4 3 2 9 9 C 1.39904 * 120.80862 * 0.02562 * 8 4 3 10 10 C 1.38546 * 120.71853 * 0.02562 * 9 8 4 11 11 C 1.43199 * 120.48400 * 180.25595 * 10 9 8 12 12 N 6.04150 * 105.90906 * 35.73921 * 2 1 3 13 13 C 1.39793 * 119.77251 * 90.00343 * 3 2 1 14 14 C 1.40745 * 120.45180 * 0.02562 * 13 3 2 15 15 H 1.07997 * 120.00379 * 317.79763 * 14 13 3 16 16 C 1.40117 * 119.99841 * 137.79860 * 14 13 3 17 17 N 1.30753 * 120.00168 * 338.50300 * 16 14 13 18 18 Si 1.86800 * 119.99918 * 158.51102 * 16 14 13 19 19 H 1.48496 * 109.47298 * 59.99934 * 18 16 14 20 20 H 1.48501 * 109.46860 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46995 * 299.99281 * 18 16 14 22 22 H 1.09005 * 109.46985 * 59.99876 * 1 2 3 23 23 H 1.08999 * 109.46748 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47073 * 300.00250 * 1 2 3 25 25 H 1.09002 * 109.46695 * 240.00522 * 2 1 3 26 26 H 1.08994 * 109.47460 * 120.00239 * 2 1 3 27 27 H 1.07995 * 122.52291 * 359.97044 * 5 4 3 28 28 H 1.08003 * 124.23758 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.64261 * 180.02562 * 9 8 4 30 30 H 0.96995 * 120.00206 * 185.41572 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2655 2.0789 -1.2203 5 6 2.0851 1.5687 -2.5717 6 6 2.3859 2.4197 -3.5320 7 16 2.9278 3.9549 -2.8842 8 6 2.7327 3.4021 -1.2232 9 6 2.9719 4.0802 -0.0231 10 6 2.7531 3.4597 1.1962 11 6 2.9944 4.1603 2.4215 12 7 3.1861 4.7160 3.3937 13 6 2.2638 2.0753 1.2134 14 6 2.0314 1.4161 2.4350 15 1 1.1495 0.8053 2.5599 16 6 2.9442 1.5523 3.4893 17 7 4.1766 1.9143 3.2444 18 14 2.4007 1.2165 5.2446 19 1 1.9297 -0.1873 5.3570 20 1 3.5453 1.4294 6.1665 21 1 1.2953 2.1401 5.6058 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.7315 0.5682 -2.7722 28 1 2.3082 2.1985 -4.5863 29 1 3.3309 5.0985 -0.0473 30 1 4.8285 1.9327 3.9624 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396226015.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:16 Heat of formation + Delta-G solvation = 46.742151 kcal Electronic energy + Delta-G solvation = -16198.139652 eV Core-core repulsion = 13662.773128 eV Total energy + Delta-G solvation = -2535.366524 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.56175 -35.80930 -34.45242 -33.14594 -33.00505 -29.32881 -28.27028 -25.83604 -23.23488 -22.69292 -20.79877 -19.99631 -17.55845 -16.83239 -16.16009 -15.53454 -15.01052 -14.01546 -13.53973 -13.25981 -12.99839 -12.91924 -12.66674 -12.35550 -12.17451 -11.67868 -11.63481 -11.52150 -11.27371 -11.22444 -11.11717 -10.89936 -10.49656 -10.37390 -9.92405 -9.82673 -9.46780 -9.26291 -8.41179 -7.40219 -7.10541 -6.85094 -4.66873 1.42376 2.35889 2.42041 2.80479 2.81357 2.99795 3.02355 3.08689 3.78610 3.98409 4.11604 4.55924 5.14729 5.31670 5.42031 5.60823 5.83337 5.88113 6.06519 6.18119 6.29395 6.41720 6.49043 6.52725 6.65947 6.76832 6.88152 6.96919 7.07210 7.19811 7.29373 7.58739 7.74721 8.11407 8.42938 8.54771 8.85527 9.91278 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.008183 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.814719 B = 3420.921912 C = 4297.759377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.151 4.151 4 C -0.018 4.018 5 C -0.117 4.117 6 C -0.196 4.196 7 S 0.009 5.991 8 C -0.224 4.224 9 C -0.014 4.014 10 C -0.078 4.078 11 C 0.316 3.684 12 N -0.490 5.490 13 C 0.167 3.833 14 C -0.463 4.463 15 H 0.096 0.904 16 C 0.084 3.916 17 N -0.770 5.770 18 Si 0.902 3.098 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.260 1.260 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.133 0.867 28 H 0.152 0.848 29 H 0.106 0.894 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 -2.677 -7.635 8.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 C -0.156 4.156 4 C -0.025 4.025 5 C -0.149 4.149 6 C -0.329 4.329 7 S 0.268 5.732 8 C -0.339 4.339 9 C -0.040 4.040 10 C -0.084 4.084 11 C 0.004 3.996 12 N -0.168 5.168 13 C 0.161 3.839 14 C -0.492 4.492 15 H 0.114 0.886 16 C -0.139 4.139 17 N -0.393 5.393 18 Si 0.726 3.274 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.184 1.184 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.150 0.850 28 H 0.170 0.830 29 H 0.124 0.876 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.366 -0.390 -6.728 7.142 hybrid contribution -0.460 -1.655 0.985 1.980 sum -2.826 -2.045 -5.743 6.719 Atomic orbital electron populations 1.21739 0.96626 0.99946 1.01662 1.20131 0.94456 0.93583 1.01446 1.19545 1.10678 0.95450 0.89884 1.18942 0.98954 0.92108 0.92478 1.21048 1.02410 1.00041 0.91364 1.24724 1.08228 0.97753 1.02205 1.83540 1.74743 1.15929 0.98972 1.21569 1.18781 0.98696 0.94808 1.19909 0.97303 0.97468 0.89290 1.16969 1.12574 0.93495 0.85365 1.25232 0.91461 0.90507 0.92360 1.80933 1.11904 1.13123 1.10808 1.17908 0.86106 0.87717 0.92179 1.19388 1.07830 1.26860 0.95105 0.88609 1.25912 0.94278 0.92371 1.01346 1.69633 1.02465 1.31225 1.35954 0.86405 0.79923 0.79926 0.81130 1.18637 1.20079 1.18389 0.93572 0.93936 0.92520 0.93280 0.90658 0.84971 0.83026 0.87611 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.90 37.16 0.37 -1.88 16 2 C -0.06 -1.05 5.34 -27.88 -0.15 -1.20 16 3 C -0.15 -3.18 5.25 -103.15 -0.54 -3.72 16 4 C -0.02 -0.37 5.96 -105.30 -0.63 -1.00 16 5 C -0.12 -1.96 9.75 -38.55 -0.38 -2.33 16 6 C -0.20 -3.00 11.01 28.84 0.32 -2.68 16 7 S 0.01 0.15 23.23 -107.50 -2.50 -2.35 16 8 C -0.22 -4.56 6.46 -38.17 -0.25 -4.81 16 9 C -0.01 -0.31 9.75 -38.84 -0.38 -0.69 16 10 C -0.08 -1.81 5.58 -104.38 -0.58 -2.39 16 11 C 0.32 7.73 11.72 -22.47 -0.26 7.47 16 12 N -0.49 -12.26 18.51 41.84 0.77 -11.48 16 13 C 0.17 3.89 5.41 -104.89 -0.57 3.32 16 14 C -0.46 -10.87 7.34 -37.93 -0.28 -11.15 16 15 H 0.10 2.12 7.14 -52.49 -0.37 1.75 16 16 C 0.08 1.98 4.07 -17.31 -0.07 1.91 16 17 N -0.77 -19.17 11.25 55.56 0.62 -18.54 16 18 Si 0.90 18.76 29.62 -169.99 -5.03 13.73 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.95 7.66 -51.93 -0.40 0.55 16 25 H 0.05 0.80 7.15 -51.93 -0.37 0.43 16 26 H 0.07 1.43 7.01 -51.93 -0.36 1.06 16 27 H 0.13 1.90 7.44 -52.49 -0.39 1.51 16 28 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 29 H 0.11 2.04 8.06 -52.49 -0.42 1.61 16 30 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 278.56 15.07 4.20 4.20 Total: -1.00 -25.52 278.56 -8.06 -33.58 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -2.72 Total: 0.02 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -3.40 Total: -19.15 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 1.40 Total: -30.03 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.50 Total: -2.35 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -25.52 -8.06 -33.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396226015.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.319 kcal (2) G-P(sol) polarization free energy of solvation -25.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds