Wall clock time and date at job start Mon Mar 30 2020 06:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46894 * 2 1 4 4 C 1.40586 * 119.77450 * 269.97735 * 3 2 1 5 5 C 1.45577 * 128.40292 * 0.02562 * 4 3 2 6 6 C 1.31790 * 114.95293 * 179.97438 * 5 4 3 7 7 S 1.75219 * 111.52569 * 359.97438 * 6 5 4 8 8 C 1.40325 * 119.89429 * 179.97438 * 4 3 2 9 9 C 1.39904 * 120.80862 * 0.02562 * 8 4 3 10 10 C 1.38546 * 120.71853 * 0.02562 * 9 8 4 11 11 C 1.43199 * 120.48400 * 180.25595 * 10 9 8 12 12 N 6.04150 * 105.90906 * 35.73921 * 2 1 3 13 13 C 1.39793 * 119.77251 * 90.00343 * 3 2 1 14 14 C 1.40745 * 120.45180 * 0.02562 * 13 3 2 15 15 H 1.07997 * 120.00379 * 317.79763 * 14 13 3 16 16 C 1.40117 * 119.99841 * 137.79860 * 14 13 3 17 17 N 1.30753 * 120.00168 * 338.50300 * 16 14 13 18 18 Si 1.86800 * 119.99918 * 158.51102 * 16 14 13 19 19 H 1.48496 * 109.47298 * 59.99934 * 18 16 14 20 20 H 1.48501 * 109.46860 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46995 * 299.99281 * 18 16 14 22 22 H 1.09005 * 109.46985 * 59.99876 * 1 2 3 23 23 H 1.08999 * 109.46748 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47073 * 300.00250 * 1 2 3 25 25 H 1.09002 * 109.46695 * 240.00522 * 2 1 3 26 26 H 1.08994 * 109.47460 * 120.00239 * 2 1 3 27 27 H 1.07995 * 122.52291 * 359.97044 * 5 4 3 28 28 H 1.08003 * 124.23758 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.64261 * 180.02562 * 9 8 4 30 30 H 0.96995 * 120.00206 * 185.41572 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2655 2.0789 -1.2203 5 6 2.0851 1.5687 -2.5717 6 6 2.3859 2.4197 -3.5320 7 16 2.9278 3.9549 -2.8842 8 6 2.7327 3.4021 -1.2232 9 6 2.9719 4.0802 -0.0231 10 6 2.7531 3.4597 1.1962 11 6 2.9944 4.1603 2.4215 12 7 3.1861 4.7160 3.3937 13 6 2.2638 2.0753 1.2134 14 6 2.0314 1.4161 2.4350 15 1 1.1495 0.8053 2.5599 16 6 2.9442 1.5523 3.4893 17 7 4.1766 1.9143 3.2444 18 14 2.4007 1.2165 5.2446 19 1 1.9297 -0.1873 5.3570 20 1 3.5453 1.4294 6.1665 21 1 1.2953 2.1401 5.6058 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.7315 0.5682 -2.7722 28 1 2.3082 2.1985 -4.5863 29 1 3.3309 5.0985 -0.0473 30 1 4.8285 1.9327 3.9624 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396226015.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:16 Heat of formation + Delta-G solvation = 35.724059 kcal Electronic energy + Delta-G solvation = -16198.617432 eV Core-core repulsion = 13662.773128 eV Total energy + Delta-G solvation = -2535.844305 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14369 -37.53901 -36.11602 -34.75244 -34.55285 -30.93198 -29.76897 -27.51823 -24.74288 -24.20166 -22.31886 -21.49209 -19.24888 -18.46242 -17.61928 -17.19060 -16.57012 -15.63129 -14.98111 -14.72666 -14.64634 -14.42037 -14.28515 -13.94877 -13.81640 -13.32342 -13.27293 -13.06277 -12.93493 -12.85384 -12.61915 -12.44342 -12.03739 -11.77815 -11.42978 -11.29734 -11.01500 -10.97917 -9.93373 -9.01454 -8.83847 -8.36443 -6.41707 -0.11779 0.75180 0.96717 1.23698 1.32228 1.37584 1.38729 1.48109 2.08309 2.10829 2.43859 2.74695 3.42628 3.62595 4.07181 4.10169 4.49358 4.52638 4.66570 4.83202 4.92481 4.98525 5.07177 5.13008 5.16772 5.30283 5.35221 5.45018 5.58865 5.65817 5.76240 5.97229 6.12511 6.37932 6.72135 6.80212 6.99115 8.16905 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.008183 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.814719 B = 3420.921912 C = 4297.759377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 C -0.157 4.157 4 C -0.028 4.028 5 C -0.133 4.133 6 C -0.173 4.173 7 S 0.035 5.965 8 C -0.242 4.242 9 C -0.019 4.019 10 C -0.109 4.109 11 C 0.321 3.679 12 N -0.516 5.516 13 C 0.145 3.855 14 C -0.483 4.483 15 H 0.100 0.900 16 C 0.054 3.946 17 N -0.807 5.807 18 Si 0.944 3.056 19 H -0.240 1.240 20 H -0.280 1.280 21 H -0.271 1.271 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.161 0.839 28 H 0.196 0.804 29 H 0.118 0.882 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.249 -3.755 -10.445 11.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.094 4.094 3 C -0.161 4.161 4 C -0.035 4.035 5 C -0.164 4.164 6 C -0.306 4.306 7 S 0.294 5.706 8 C -0.356 4.356 9 C -0.044 4.044 10 C -0.115 4.115 11 C 0.010 3.990 12 N -0.195 5.195 13 C 0.139 3.861 14 C -0.512 4.512 15 H 0.118 0.882 16 C -0.164 4.164 17 N -0.431 5.431 18 Si 0.767 3.233 19 H -0.163 1.163 20 H -0.205 1.205 21 H -0.196 1.196 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.178 0.822 28 H 0.213 0.787 29 H 0.136 0.864 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.265 -1.480 -9.548 10.199 hybrid contribution -0.206 -1.262 1.545 2.006 sum -3.471 -2.742 -8.003 9.144 Atomic orbital electron populations 1.21659 0.94830 1.01537 1.01165 1.20162 0.95922 0.91673 1.01665 1.19932 1.09661 0.96855 0.89624 1.19403 0.97998 0.92118 0.93962 1.21189 1.03847 1.01806 0.89541 1.25260 1.05237 0.95989 1.04126 1.83527 1.74338 1.16832 0.95903 1.22030 1.17715 0.99279 0.96604 1.20081 0.96986 0.98081 0.89245 1.17211 1.14540 0.94157 0.85633 1.25581 0.90813 0.90041 0.92522 1.80889 1.13144 1.14096 1.11339 1.18210 0.86813 0.87854 0.93254 1.19535 1.08204 1.27735 0.95737 0.88191 1.26439 0.94129 0.92124 1.03752 1.69697 1.03229 1.33916 1.36301 0.85764 0.78887 0.80650 0.78040 1.16275 1.20542 1.19642 0.92828 0.91293 0.94221 0.91174 0.92231 0.82153 0.78665 0.86431 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.90 71.98 0.71 -3.24 16 2 C -0.06 -1.95 5.34 29.85 0.16 -1.79 16 3 C -0.16 -6.46 5.25 -18.91 -0.10 -6.56 16 4 C -0.03 -1.05 5.96 -20.31 -0.12 -1.17 16 5 C -0.13 -3.89 9.75 23.40 0.23 -3.66 16 6 C -0.17 -4.42 11.01 67.06 0.74 -3.68 16 7 S 0.03 1.05 23.23 -56.49 -1.31 -0.26 16 8 C -0.24 -9.47 6.46 23.18 0.15 -9.32 16 9 C -0.02 -0.81 9.75 22.75 0.22 -0.58 16 10 C -0.11 -5.22 5.58 -19.71 -0.11 -5.33 16 11 C 0.32 16.28 11.72 88.33 1.04 17.31 16 12 N -0.52 -26.76 18.51 19.00 0.35 -26.41 16 13 C 0.14 6.86 5.41 -20.04 -0.11 6.76 16 14 C -0.48 -23.23 7.34 23.34 0.17 -23.06 16 15 H 0.10 4.54 7.14 -2.91 -0.02 4.52 16 16 C 0.05 2.64 4.07 85.31 0.35 2.98 16 17 N -0.81 -41.70 11.25 21.86 0.25 -41.46 16 18 Si 0.94 39.23 29.62 68.60 2.03 41.27 16 19 H -0.24 -8.99 7.11 99.48 0.71 -8.28 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.04 1.28 7.66 -2.39 -0.02 1.26 16 25 H 0.07 2.08 7.15 -2.39 -0.02 2.06 16 26 H 0.06 2.22 7.01 -2.39 -0.02 2.21 16 27 H 0.16 3.77 7.44 -2.91 -0.02 3.75 16 28 H 0.20 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 30 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 Total: -1.00 -56.10 278.56 5.81 -50.28 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.17 Total: 7.91 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 3.32 Total: -31.34 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: 0.60 Total: -67.87 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.27 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -1.31 Total: -0.26 kcal Total: -56.10 5.81 -50.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396226015.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.008 kcal (2) G-P(sol) polarization free energy of solvation -56.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds