Wall clock time and date at job start Mon Mar 30 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47146 * 2 1 4 4 C 1.37843 * 119.64290 * 264.99907 * 3 2 1 5 5 C 1.38194 * 120.39518 * 180.02562 * 4 3 2 6 6 C 1.39048 * 120.08103 * 0.02562 * 5 4 3 7 7 C 1.43198 * 120.01199 * 179.97438 * 6 5 4 8 8 N 6.85128 * 109.52406 * 359.47946 * 2 1 3 9 9 C 1.41915 * 119.97512 * 0.25885 * 6 5 4 10 10 C 1.46334 * 129.54705 * 180.45737 * 9 6 5 11 11 C 1.40910 * 123.28942 * 359.22461 * 10 9 6 12 12 H 1.07999 * 120.00311 * 25.93191 * 11 10 9 13 13 C 1.39697 * 120.00077 * 205.92793 * 11 10 9 14 14 N 1.31080 * 119.99948 * 9.93355 * 13 11 10 15 15 Si 1.86802 * 120.00180 * 189.93846 * 13 11 10 16 16 H 1.48500 * 109.46997 * 59.99702 * 15 13 11 17 17 H 1.48500 * 109.47097 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47015 * 299.99765 * 15 13 11 19 19 C 1.36589 * 113.41417 * 179.55788 * 10 9 6 20 20 S 1.69987 * 111.90032 * 359.70720 * 19 10 9 21 21 C 1.39279 * 119.12466 * 359.42446 * 9 6 5 22 22 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47594 * 299.99940 * 1 2 3 24 24 H 1.09008 * 109.47273 * 60.00228 * 1 2 3 25 25 H 1.09003 * 109.47466 * 240.00345 * 2 1 3 26 26 H 1.09000 * 109.47449 * 120.00043 * 2 1 3 27 27 H 1.08004 * 119.80647 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.95919 * 180.02562 * 5 4 3 29 29 H 0.96995 * 120.00423 * 179.97438 * 14 13 11 30 30 H 1.07996 * 124.05081 * 179.70059 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3580 2.0288 -1.1935 5 6 2.8206 3.3309 -1.2115 6 6 2.9611 4.0371 -0.0220 7 6 3.4411 5.3861 -0.0423 8 7 3.8197 6.4571 -0.0587 9 6 2.6342 3.4185 1.2127 10 6 2.6927 3.9606 2.5707 11 6 3.1291 5.2681 2.8634 12 1 3.0436 6.0454 2.1185 13 6 3.6723 5.5589 4.1172 14 7 3.9568 4.5871 4.9495 15 14 3.9931 7.3326 4.6075 16 1 2.7166 8.0910 4.5849 17 1 4.5674 7.3716 5.9764 18 1 4.9499 7.9452 3.6512 19 6 2.2896 3.0729 3.5273 20 16 1.8248 1.5829 2.8540 21 6 2.1632 2.1078 1.2105 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2511 1.4843 -2.1201 28 1 3.0734 3.8005 -2.1506 29 1 4.3343 4.7889 5.8199 30 1 2.2688 3.2914 4.5847 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396226530.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:21 Heat of formation + Delta-G solvation = 33.915053 kcal Electronic energy + Delta-G solvation = -15960.371973 eV Core-core repulsion = 13424.449224 eV Total energy + Delta-G solvation = -2535.922749 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62226 -37.55320 -37.01098 -34.90608 -33.95686 -30.64120 -30.06620 -27.94270 -25.23345 -24.21351 -22.42985 -21.30290 -20.22479 -18.49671 -17.24885 -16.68932 -16.53320 -15.94449 -15.31023 -15.15475 -14.86023 -14.42563 -14.38853 -13.98200 -13.83035 -13.57903 -13.23504 -13.11708 -12.91272 -12.76641 -12.65949 -12.23565 -12.05627 -11.71624 -11.67241 -11.58417 -11.18019 -11.06323 -9.99239 -9.16190 -8.65779 -8.44344 -6.32335 -0.24038 0.31291 1.13706 1.19029 1.24349 1.34696 1.76945 1.87146 1.92848 2.03058 2.14251 2.87550 3.12181 3.31659 3.93329 4.01933 4.14392 4.45773 4.59836 4.64923 4.71518 4.97195 5.00949 5.14883 5.18264 5.20611 5.28479 5.41944 5.52514 5.57372 5.70343 5.91620 6.01512 6.43810 6.60439 6.79737 6.88311 8.34503 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.008198 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.373871 B = 3414.473501 C = 4444.107453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.022 4.022 4 C -0.111 4.111 5 C -0.058 4.058 6 C -0.034 4.034 7 C 0.287 3.713 8 N -0.475 5.475 9 C -0.055 4.055 10 C 0.044 3.956 11 C -0.473 4.473 12 H 0.068 0.932 13 C 0.032 3.968 14 N -0.830 5.830 15 Si 0.962 3.038 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.274 1.274 19 C -0.364 4.364 20 S 0.093 5.907 21 C -0.157 4.157 22 H 0.078 0.922 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.183 0.817 28 H 0.164 0.836 29 H 0.283 0.717 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 -10.086 -10.420 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.028 4.028 4 C -0.131 4.131 5 C -0.082 4.082 6 C -0.039 4.039 7 C -0.026 4.026 8 N -0.152 5.152 9 C -0.067 4.067 10 C 0.035 3.965 11 C -0.507 4.507 12 H 0.086 0.914 13 C -0.181 4.181 14 N -0.458 5.458 15 Si 0.784 3.216 16 H -0.187 1.187 17 H -0.183 1.183 18 H -0.199 1.199 19 C -0.501 4.501 20 S 0.357 5.643 21 C -0.272 4.272 22 H 0.097 0.903 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.127 0.873 26 H 0.084 0.916 27 H 0.200 0.800 28 H 0.182 0.818 29 H 0.093 0.907 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.702 -9.753 -9.429 14.358 hybrid contribution 0.881 2.336 0.701 2.593 sum -3.821 -7.418 -8.728 12.075 Atomic orbital electron populations 1.21724 0.93712 1.02786 1.02023 1.20712 0.97015 0.90375 1.04287 1.19950 0.95972 0.96939 0.89911 1.21144 0.99921 0.94019 0.98059 1.21281 0.96657 0.94756 0.95466 1.16076 1.07266 0.86468 0.94087 1.25920 0.92421 0.93098 0.91193 1.81048 1.11215 1.12934 1.09987 1.19646 1.00004 0.93956 0.93122 1.17689 0.95006 0.95130 0.88702 1.19293 1.36889 0.95134 0.99393 0.91359 1.26408 0.93380 1.02379 0.95899 1.69905 1.33370 1.34392 1.08103 0.85541 0.79380 0.78340 0.78304 1.18685 1.18256 1.19876 1.24393 1.22739 0.99888 1.03031 1.81424 1.71967 1.16204 0.94707 1.22711 1.08413 0.97042 0.99069 0.90338 0.94354 0.91468 0.87260 0.91611 0.80020 0.81841 0.90674 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.89 71.98 0.71 -1.99 16 2 C -0.09 -1.76 5.86 29.85 0.17 -1.58 16 3 C -0.02 -0.60 5.17 -19.58 -0.10 -0.70 16 4 C -0.11 -2.50 9.62 22.17 0.21 -2.29 16 5 C -0.06 -1.58 9.72 22.45 0.22 -1.36 16 6 C -0.03 -1.33 5.78 -20.93 -0.12 -1.45 16 7 C 0.29 12.56 12.82 88.33 1.13 13.69 16 8 N -0.48 -22.18 17.82 19.00 0.34 -21.84 16 9 C -0.05 -2.50 6.01 -20.01 -0.12 -2.63 16 10 C 0.04 2.40 5.66 -20.90 -0.12 2.28 16 11 C -0.47 -27.09 8.38 23.28 0.20 -26.90 16 12 H 0.07 3.92 5.35 -2.91 -0.02 3.90 16 13 C 0.03 1.77 5.36 85.16 0.46 2.23 16 14 N -0.83 -46.17 10.92 21.79 0.24 -45.93 16 15 Si 0.96 43.38 29.57 68.60 2.03 45.40 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 19 C -0.36 -19.21 9.49 67.43 0.64 -18.57 16 20 S 0.09 3.82 22.33 -56.49 -1.26 2.56 16 21 C -0.16 -6.09 6.27 22.90 0.14 -5.95 16 22 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.11 1.47 8.04 -2.39 -0.02 1.46 16 26 H 0.07 1.48 7.74 -2.39 -0.02 1.46 16 27 H 0.18 2.22 8.05 -2.91 -0.02 2.20 16 28 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 30 H 0.13 7.63 6.45 -2.91 -0.02 7.61 16 Total: -1.00 -67.22 278.39 5.94 -61.28 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: 1.17 Total: 3.74 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 3.42 Total: -45.21 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: 0.58 Total: -67.77 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.26 Total: 2.56 kcal Total: -67.22 5.94 -61.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396226530.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.195 kcal (2) G-P(sol) polarization free energy of solvation -67.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds