Wall clock time and date at job start Mon Mar 30 2020 06:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39550 * 120.55037 * 345.01054 * 3 2 1 5 5 C 1.37230 * 120.97972 * 180.02562 * 4 3 2 6 6 C 1.40195 * 122.49561 * 359.97438 * 5 4 3 7 7 S 1.75982 * 129.83505 * 179.97438 * 6 5 4 8 8 C 1.69985 * 93.13392 * 180.02562 * 7 6 5 9 9 C 1.35940 * 111.90036 * 359.97438 * 8 7 6 10 10 C 1.46186 * 123.20260 * 179.97438 * 9 8 7 11 11 O 1.21379 * 119.99980 * 354.54791 * 10 9 8 12 12 C 1.39190 * 120.30467 * 359.97438 * 6 5 4 13 13 C 1.46321 * 120.54974 * 165.03901 * 3 2 1 14 14 C 1.40110 * 120.74889 * 359.97438 * 13 3 2 15 15 H 1.08000 * 120.00002 * 128.73447 * 14 13 3 16 16 C 1.40351 * 120.00159 * 308.74530 * 14 13 3 17 17 N 1.30619 * 120.00265 * 159.41522 * 16 14 13 18 18 Si 1.86807 * 119.99841 * 339.41327 * 16 14 13 19 19 H 1.48497 * 109.47163 * 96.04113 * 18 16 14 20 20 H 1.48501 * 109.46948 * 216.04488 * 18 16 14 21 21 H 1.48499 * 109.46891 * 336.03859 * 18 16 14 22 22 H 1.07994 * 119.50888 * 0.02595 * 4 3 2 23 23 H 1.08000 * 118.75394 * 179.70152 * 5 4 3 24 24 H 1.08004 * 124.04508 * 179.97438 * 8 7 6 25 25 H 1.08003 * 119.99956 * 174.54888 * 10 9 8 26 26 H 0.96999 * 119.99968 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2779 -1.1599 0.3108 5 6 4.6501 -1.1691 0.3140 6 6 5.4116 -0.0320 0.0097 7 16 7.1586 0.1736 -0.0439 8 6 7.0459 1.8120 -0.4827 9 6 5.7538 2.2195 -0.5935 10 6 5.3729 3.5828 -0.9585 11 8 6.2249 4.4384 -1.0825 12 6 4.7842 1.1679 -0.3128 13 6 3.3112 1.2184 -0.3253 14 6 2.6378 2.4052 -0.6431 15 1 2.8911 3.3229 -0.1332 16 6 1.6339 2.4015 -1.6239 17 7 0.7442 3.3574 -1.6516 18 14 1.5701 1.0293 -2.8899 19 1 0.6121 -0.0132 -2.4421 20 1 1.1272 1.5807 -4.1956 21 1 2.9206 0.4297 -3.0384 22 1 2.7393 -2.0642 0.5525 23 1 5.1630 -2.0859 0.5646 24 1 7.8988 2.4523 -0.6531 25 1 4.3333 3.8288 -1.1177 26 1 0.0507 3.3550 -2.3297 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396227141.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:26 Heat of formation + Delta-G solvation = 32.800328 kcal Electronic energy + Delta-G solvation = -15848.723498 eV Core-core repulsion = 13176.919316 eV Total energy + Delta-G solvation = -2671.804182 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.97907 -37.79551 -35.68590 -34.11231 -33.87210 -30.89927 -28.99985 -25.91321 -25.26073 -22.58461 -21.43972 -19.38258 -18.62005 -17.23669 -16.62206 -15.57952 -15.38963 -15.04430 -14.16862 -13.86492 -13.71310 -13.31694 -13.16431 -13.00720 -12.44640 -12.18499 -12.00781 -11.78092 -11.65197 -11.41809 -11.04305 -10.70693 -10.35099 -10.26798 -10.08130 -9.50918 -9.17198 -8.53557 -7.95668 -7.41992 -7.14110 -5.02557 1.04717 1.61441 1.97475 2.17465 2.43092 2.91305 2.96672 3.06280 3.36608 3.69997 3.72389 3.87925 4.19927 4.84852 5.00110 5.16390 5.31332 5.61237 5.77164 5.95871 6.08486 6.27710 6.44806 6.47168 6.70665 6.95115 6.98793 7.25337 7.32001 7.71237 7.95205 8.01780 8.16379 8.62647 9.55844 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019983 B = 0.010564 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.851593 B = 2649.923501 C = 3607.853685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.288 3.712 3 C -0.178 4.178 4 C -0.001 4.001 5 C -0.207 4.207 6 C -0.091 4.091 7 S 0.130 5.870 8 C -0.212 4.212 9 C -0.150 4.150 10 C 0.394 3.606 11 O -0.488 6.488 12 C -0.116 4.116 13 C 0.166 3.834 14 C -0.438 4.438 15 H 0.116 0.884 16 C 0.092 3.908 17 N -0.759 5.759 18 Si 0.877 3.123 19 H -0.247 1.247 20 H -0.273 1.273 21 H -0.238 1.238 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.165 0.835 25 H 0.130 0.870 26 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.745 -5.346 0.061 9.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.023 4.023 3 C -0.186 4.186 4 C -0.025 4.025 5 C -0.231 4.231 6 C -0.207 4.207 7 S 0.398 5.602 8 C -0.349 4.349 9 C -0.166 4.166 10 C 0.253 3.747 11 O -0.364 6.364 12 C -0.123 4.123 13 C 0.159 3.841 14 C -0.464 4.464 15 H 0.134 0.866 16 C -0.134 4.134 17 N -0.379 5.379 18 Si 0.698 3.302 19 H -0.171 1.171 20 H -0.198 1.198 21 H -0.160 1.160 22 H 0.132 0.868 23 H 0.127 0.873 24 H 0.182 0.818 25 H 0.146 0.854 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.497 -5.621 0.152 9.371 hybrid contribution -0.894 0.479 -0.828 1.309 sum 6.603 -5.142 -0.676 8.396 Atomic orbital electron populations 1.81058 1.12430 1.08921 1.13123 1.25305 0.92472 0.92353 0.92193 1.16810 0.83837 0.97061 1.20884 1.20350 0.92982 0.95434 0.93707 1.19412 0.92548 0.96024 1.15105 1.22582 0.95444 0.98071 1.04636 1.82499 1.03440 1.04470 1.69823 1.25177 1.00688 1.00945 1.08068 1.20768 0.91706 0.97508 1.06589 1.24306 0.95681 0.84939 0.69773 1.90446 1.56230 1.50188 1.39534 1.20027 0.92943 0.90990 1.08316 1.19135 0.87382 0.90819 0.86802 1.19472 1.12817 0.96581 1.17555 0.86647 1.26193 0.91814 0.96746 0.98667 1.69557 1.08181 1.30585 1.29604 0.86721 0.82489 0.81659 0.79304 1.17074 1.19809 1.16019 0.86814 0.87283 0.81797 0.85400 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.28 17.99 41.84 0.75 -10.53 15 2 C 0.29 6.43 10.95 -22.47 -0.25 6.19 15 3 C -0.18 -3.70 4.84 -104.23 -0.50 -4.21 15 4 C 0.00 -0.02 9.68 -39.46 -0.38 -0.40 15 5 C -0.21 -3.49 9.94 -39.21 -0.39 -3.88 15 6 C -0.09 -1.65 6.44 -38.49 -0.25 -1.90 15 7 S 0.13 1.94 22.98 -107.50 -2.47 -0.53 15 8 C -0.21 -3.52 10.41 29.91 0.31 -3.21 15 9 C -0.15 -2.84 5.97 -104.52 -0.62 -3.46 15 10 C 0.39 7.52 10.99 33.92 0.37 7.89 15 11 O -0.49 -10.00 17.51 5.47 0.10 -9.90 15 12 C -0.12 -2.32 6.19 -102.81 -0.64 -2.96 15 13 C 0.17 3.58 4.71 -102.22 -0.48 3.09 15 14 C -0.44 -9.89 7.10 -38.09 -0.27 -10.16 15 15 H 0.12 2.63 6.80 -52.49 -0.36 2.27 15 16 C 0.09 2.13 4.68 -17.27 -0.08 2.05 15 17 N -0.76 -18.06 13.92 55.57 0.77 -17.28 15 18 Si 0.88 18.70 25.01 -169.99 -4.25 14.45 15 19 H -0.25 -5.48 6.02 56.52 0.34 -5.14 15 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 21 H -0.24 -5.01 7.11 56.52 0.40 -4.61 15 22 H 0.11 1.70 8.06 -52.49 -0.42 1.28 15 23 H 0.11 1.54 8.06 -52.49 -0.42 1.11 15 24 H 0.16 2.46 7.98 -52.48 -0.42 2.04 15 25 H 0.13 2.44 5.08 -52.48 -0.27 2.18 15 26 H 0.30 6.52 8.29 -40.82 -0.34 6.19 15 LS Contribution 253.80 15.07 3.82 3.82 Total: -1.00 -25.27 253.80 -5.54 -30.81 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -1.08 Total: 0.13 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -3.18 Total: -10.96 kcal Atomic # 7 Polarization: -29.34 SS G_CDS: 1.53 Total: -27.81 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.10 Total: -9.90 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.25 Total: 14.45 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.47 Total: -0.53 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -25.27 -5.54 -30.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227141.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.607 kcal (2) G-P(sol) polarization free energy of solvation -25.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds