Wall clock time and date at job start Mon Mar 30 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39550 * 120.55037 * 345.01054 * 3 2 1 5 5 C 1.37230 * 120.97972 * 180.02562 * 4 3 2 6 6 C 1.40195 * 122.49561 * 359.97438 * 5 4 3 7 7 S 1.75982 * 129.83505 * 179.97438 * 6 5 4 8 8 C 1.69985 * 93.13392 * 180.02562 * 7 6 5 9 9 C 1.35940 * 111.90036 * 359.97438 * 8 7 6 10 10 C 1.46186 * 123.20260 * 179.97438 * 9 8 7 11 11 O 1.21379 * 119.99980 * 354.54791 * 10 9 8 12 12 C 1.39190 * 120.30467 * 359.97438 * 6 5 4 13 13 C 1.46321 * 120.54974 * 165.03901 * 3 2 1 14 14 C 1.40110 * 120.74889 * 359.97438 * 13 3 2 15 15 H 1.08000 * 120.00002 * 128.73447 * 14 13 3 16 16 C 1.40351 * 120.00159 * 308.74530 * 14 13 3 17 17 N 1.30619 * 120.00265 * 159.41522 * 16 14 13 18 18 Si 1.86807 * 119.99841 * 339.41327 * 16 14 13 19 19 H 1.48497 * 109.47163 * 96.04113 * 18 16 14 20 20 H 1.48501 * 109.46948 * 216.04488 * 18 16 14 21 21 H 1.48499 * 109.46891 * 336.03859 * 18 16 14 22 22 H 1.07994 * 119.50888 * 0.02595 * 4 3 2 23 23 H 1.08000 * 118.75394 * 179.70152 * 5 4 3 24 24 H 1.08004 * 124.04508 * 179.97438 * 8 7 6 25 25 H 1.08003 * 119.99956 * 174.54888 * 10 9 8 26 26 H 0.96999 * 119.99968 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2779 -1.1599 0.3108 5 6 4.6501 -1.1691 0.3140 6 6 5.4116 -0.0320 0.0097 7 16 7.1586 0.1736 -0.0439 8 6 7.0459 1.8120 -0.4827 9 6 5.7538 2.2195 -0.5935 10 6 5.3729 3.5828 -0.9585 11 8 6.2249 4.4384 -1.0825 12 6 4.7842 1.1679 -0.3128 13 6 3.3112 1.2184 -0.3253 14 6 2.6378 2.4052 -0.6431 15 1 2.8911 3.3229 -0.1332 16 6 1.6339 2.4015 -1.6239 17 7 0.7442 3.3574 -1.6516 18 14 1.5701 1.0293 -2.8899 19 1 0.6121 -0.0132 -2.4421 20 1 1.1272 1.5807 -4.1956 21 1 2.9206 0.4297 -3.0384 22 1 2.7393 -2.0642 0.5525 23 1 5.1630 -2.0859 0.5646 24 1 7.8988 2.4523 -0.6531 25 1 4.3333 3.8288 -1.1177 26 1 0.0507 3.3550 -2.3297 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227141.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:25 Heat of formation + Delta-G solvation = 19.040693 kcal Electronic energy + Delta-G solvation = -15849.320160 eV Core-core repulsion = 13176.919316 eV Total energy + Delta-G solvation = -2672.400844 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47389 -39.32821 -37.36694 -35.76842 -35.36093 -32.47594 -30.47545 -27.46485 -26.73255 -24.14064 -22.95222 -20.83659 -20.22468 -18.76878 -18.10041 -17.13948 -16.85214 -16.61714 -15.63024 -15.39216 -15.19384 -15.00594 -14.81912 -14.58763 -14.02282 -13.70847 -13.55000 -13.31480 -13.29337 -12.90593 -12.69447 -12.27112 -11.90646 -11.71750 -11.59020 -11.19769 -10.68381 -9.99853 -9.40114 -9.09392 -8.54239 -6.68764 -0.36926 0.03171 0.64492 0.65886 1.04961 1.21958 1.24303 1.36418 1.87446 1.99158 1.99780 2.30537 2.49723 3.24449 3.42146 3.72067 3.89318 4.22679 4.38765 4.48857 4.68592 4.87444 4.92517 5.03213 5.17776 5.45582 5.52297 5.73511 5.84087 6.08026 6.36812 6.49825 6.53443 6.90877 7.92731 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019983 B = 0.010564 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.851593 B = 2649.923501 C = 3607.853685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.295 3.705 3 C -0.191 4.191 4 C -0.009 4.009 5 C -0.178 4.178 6 C -0.122 4.122 7 S 0.235 5.765 8 C -0.198 4.198 9 C -0.185 4.185 10 C 0.400 3.600 11 O -0.509 6.509 12 C -0.127 4.127 13 C 0.158 3.842 14 C -0.467 4.467 15 H 0.098 0.902 16 C 0.073 3.927 17 N -0.805 5.805 18 Si 0.904 3.096 19 H -0.261 1.261 20 H -0.265 1.265 21 H -0.232 1.232 22 H 0.145 0.855 23 H 0.151 0.849 24 H 0.183 0.817 25 H 0.121 0.879 26 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.949 -8.120 0.601 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.015 4.015 3 C -0.199 4.199 4 C -0.032 4.032 5 C -0.202 4.202 6 C -0.238 4.238 7 S 0.504 5.496 8 C -0.335 4.335 9 C -0.201 4.201 10 C 0.261 3.739 11 O -0.387 6.387 12 C -0.133 4.133 13 C 0.151 3.849 14 C -0.495 4.495 15 H 0.115 0.885 16 C -0.149 4.149 17 N -0.428 5.428 18 Si 0.725 3.275 19 H -0.185 1.185 20 H -0.190 1.190 21 H -0.155 1.155 22 H 0.163 0.837 23 H 0.169 0.831 24 H 0.200 0.800 25 H 0.137 0.863 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.715 -8.419 0.693 13.644 hybrid contribution -1.517 1.136 -0.859 2.081 sum 9.198 -7.283 -0.166 11.734 Atomic orbital electron populations 1.81044 1.13439 1.10005 1.14443 1.25689 0.92923 0.91434 0.91406 1.17131 0.83101 0.98208 1.21448 1.20703 0.93689 0.95433 0.93378 1.19933 0.92224 0.96890 1.11104 1.23081 0.98417 0.97707 1.04582 1.82229 0.99161 1.01329 1.66921 1.25665 1.00329 1.02967 1.04547 1.20664 0.92602 0.97112 1.09711 1.24198 0.95237 0.85405 0.69075 1.90426 1.56434 1.50808 1.41024 1.20138 0.92443 0.92342 1.08403 1.19291 0.88517 0.90662 0.86442 1.19348 1.14304 0.96678 1.19123 0.88452 1.26536 0.91620 0.97368 0.99346 1.69596 1.09654 1.32479 1.31058 0.86326 0.82086 0.80278 0.78846 1.18534 1.19030 1.15462 0.83720 0.83149 0.79954 0.86310 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.53 17.99 19.00 0.34 -24.19 15 2 C 0.30 13.26 10.95 88.33 0.97 14.22 15 3 C -0.19 -7.73 4.84 -19.61 -0.09 -7.82 15 4 C -0.01 -0.28 9.68 22.35 0.22 -0.06 15 5 C -0.18 -5.07 9.94 22.51 0.22 -4.85 15 6 C -0.12 -3.85 6.44 22.97 0.15 -3.70 15 7 S 0.23 5.65 22.98 -56.49 -1.30 4.36 15 8 C -0.20 -5.79 10.41 67.29 0.70 -5.09 15 9 C -0.19 -6.69 5.97 -19.80 -0.12 -6.81 15 10 C 0.40 15.44 10.99 69.89 0.77 16.21 15 11 O -0.51 -20.87 17.51 -3.34 -0.06 -20.93 15 12 C -0.13 -4.82 6.19 -18.69 -0.12 -4.94 15 13 C 0.16 6.78 4.71 -18.31 -0.09 6.69 15 14 C -0.47 -21.99 7.10 23.24 0.16 -21.82 15 15 H 0.10 4.78 6.80 -2.91 -0.02 4.76 15 16 C 0.07 3.51 4.68 85.39 0.40 3.91 15 17 N -0.80 -40.61 13.92 21.90 0.30 -40.30 15 18 Si 0.90 38.96 25.01 68.60 1.72 40.67 15 19 H -0.26 -11.72 6.02 99.48 0.60 -11.12 15 20 H -0.27 -10.90 7.11 99.48 0.71 -10.20 15 21 H -0.23 -9.61 7.11 99.48 0.71 -8.90 15 22 H 0.15 3.69 8.06 -2.91 -0.02 3.67 15 23 H 0.15 3.11 8.06 -2.91 -0.02 3.09 15 24 H 0.18 4.69 7.98 -2.91 -0.02 4.67 15 25 H 0.12 4.82 5.08 -2.91 -0.01 4.81 15 26 H 0.30 13.92 8.29 -92.71 -0.77 13.16 15 Total: -1.00 -55.86 253.80 5.32 -50.54 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.14 Total: 3.91 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 3.17 Total: -14.06 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: 0.65 Total: -64.49 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.06 Total: -20.93 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.72 Total: 40.67 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.30 Total: 4.36 kcal Total: -55.86 5.32 -50.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227141.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.583 kcal (2) G-P(sol) polarization free energy of solvation -55.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds