Wall clock time and date at job start Mon Mar 30 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47140 * 2 1 4 4 S 1.70000 * 123.94268 * 269.98105 * 3 2 1 5 5 C 1.75825 * 93.06265 * 180.02562 * 4 3 2 6 6 C 1.39068 * 130.24756 * 180.27059 * 5 4 3 7 7 C 1.40317 * 119.98977 * 180.19540 * 6 5 4 8 8 C 1.41068 * 120.15573 * 179.79205 * 7 6 5 9 9 H 1.08000 * 120.00268 * 24.42570 * 8 7 6 10 10 C 1.39877 * 119.99375 * 204.70963 * 8 7 6 11 11 N 1.30884 * 120.00602 * 17.55968 * 10 8 7 12 12 Si 1.86804 * 119.99562 * 197.56016 * 10 8 7 13 13 H 1.48499 * 109.47277 * 59.99823 * 12 10 8 14 14 H 1.48498 * 109.47140 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47195 * 299.99803 * 12 10 8 16 16 C 1.41175 * 119.68346 * 359.51306 * 7 6 5 17 17 C 1.35443 * 120.21194 * 0.24761 * 16 7 6 18 18 C 1.39983 * 109.93251 * 359.97438 * 5 4 3 19 19 C 1.35353 * 123.94536 * 89.99933 * 3 2 1 20 20 C 1.43203 * 123.08229 * 0.02562 * 19 3 2 21 21 N 3.70811 * 96.50755 * 71.18098 * 2 1 3 22 22 H 1.08994 * 109.47160 * 60.00417 * 1 2 3 23 23 H 1.09003 * 109.46915 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46955 * 299.99718 * 1 2 3 25 25 H 1.09001 * 109.47407 * 240.00189 * 2 1 3 26 26 H 1.08999 * 109.47482 * 120.00243 * 2 1 3 27 27 H 1.07997 * 120.00800 * 359.96116 * 6 5 4 28 28 H 0.96994 * 120.00172 * 180.02562 * 11 10 8 29 29 H 1.07997 * 119.89555 * 180.23625 * 16 7 6 30 30 H 1.08001 * 119.61743 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3491 2.3156 -1.4103 5 6 2.8526 3.7381 -0.5079 6 6 3.2870 4.9803 -0.9577 7 6 3.6446 5.9747 -0.0346 8 6 4.0899 7.2345 -0.4871 9 1 3.8011 7.5900 -1.4652 10 6 4.9103 8.0205 0.3287 11 7 5.5431 7.4776 1.3377 12 14 5.1030 9.8452 -0.0218 13 1 3.7763 10.5076 0.0590 14 1 6.0194 10.4476 0.9795 15 1 5.6669 10.0310 -1.3830 16 6 3.5510 5.7105 1.3490 17 6 3.1230 4.5015 1.7846 18 6 2.7632 3.4877 0.8665 19 6 2.2842 2.1334 1.1228 20 6 2.0984 1.6063 2.4413 21 7 1.9502 1.1885 3.4873 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.3528 5.1782 -2.0174 28 1 6.1117 8.0228 1.9036 29 1 3.8217 6.4747 2.0625 30 1 3.0554 4.3096 2.8452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396227214.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:58 Heat of formation + Delta-G solvation = 41.347627 kcal Electronic energy + Delta-G solvation = -15514.532601 eV Core-core repulsion = 12978.932152 eV Total energy + Delta-G solvation = -2535.600448 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.53646 -36.63228 -35.08072 -33.95590 -31.85327 -29.89850 -28.61817 -25.56751 -24.17527 -22.63829 -20.94426 -20.28682 -17.90779 -16.65010 -16.40815 -15.46546 -14.96950 -14.24585 -13.78087 -13.59736 -13.55325 -13.08708 -12.76508 -12.57897 -12.37147 -12.24027 -12.09885 -11.70582 -11.39700 -11.28019 -11.16380 -10.96893 -10.74136 -10.49122 -10.11481 -9.99652 -9.56674 -9.29513 -8.58751 -7.51452 -7.16712 -6.85054 -4.62294 1.29761 2.23777 2.50432 2.68291 2.69973 2.92090 2.93776 3.01420 3.18000 3.70214 3.88773 4.36712 4.66740 4.96386 5.21784 5.34438 5.42531 5.63589 5.89314 5.94728 6.02313 6.23612 6.30129 6.43898 6.66120 6.71143 6.76831 6.92590 7.09576 7.42924 7.58420 7.70122 7.85832 7.96633 8.24753 8.51997 8.57931 9.82666 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.035688 B = 0.005483 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.386973 B = 5105.530000 C = 5733.434328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.202 4.202 4 S 0.114 5.886 5 C -0.081 4.081 6 C -0.217 4.217 7 C 0.129 3.871 8 C -0.436 4.436 9 H 0.087 0.913 10 C 0.073 3.927 11 N -0.776 5.776 12 Si 0.916 3.084 13 H -0.260 1.260 14 H -0.276 1.276 15 H -0.262 1.262 16 C -0.129 4.129 17 C -0.074 4.074 18 C -0.169 4.169 19 C -0.009 4.009 20 C 0.291 3.709 21 N -0.451 5.451 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.289 0.711 29 H 0.127 0.873 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 -4.610 -4.235 7.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.322 4.322 4 S 0.381 5.619 5 C -0.196 4.196 6 C -0.243 4.243 7 C 0.123 3.877 8 C -0.465 4.465 9 H 0.105 0.895 10 C -0.148 4.148 11 N -0.399 5.399 12 Si 0.740 3.260 13 H -0.184 1.184 14 H -0.200 1.200 15 H -0.186 1.186 16 C -0.148 4.148 17 C -0.095 4.095 18 C -0.175 4.175 19 C -0.028 4.028 20 C -0.025 4.025 21 N -0.129 5.129 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.145 0.855 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.009 -5.599 -3.936 7.932 hybrid contribution 0.459 1.277 1.152 1.780 sum -3.551 -4.322 -2.784 6.248 Atomic orbital electron populations 1.21775 0.94615 1.01410 1.02546 1.20032 0.96023 0.90211 1.02661 1.23408 1.10603 1.01081 0.97136 1.82372 1.68477 1.04687 1.06348 1.22085 1.04861 0.97749 0.94886 1.20200 1.14790 0.91207 0.98122 1.17499 0.87555 0.91561 0.91097 1.19678 1.24355 0.99923 1.02534 0.89477 1.26065 0.93451 1.01546 0.93735 1.69812 1.18667 1.38282 1.13166 0.86210 0.79484 0.80788 0.79543 1.18426 1.20034 1.18603 1.21060 1.00916 0.96274 0.96592 1.20185 0.99740 0.93066 0.96523 1.18117 1.14212 0.92543 0.92649 1.15969 1.07589 0.94128 0.85065 1.25381 0.92483 0.92221 0.92369 1.81128 1.10745 1.09808 1.11176 0.92090 0.92497 0.92653 0.90676 0.91115 0.87917 0.90019 0.85528 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 37.16 0.37 -1.39 16 2 C -0.05 -0.67 6.01 -27.89 -0.17 -0.84 16 3 C -0.20 -3.40 5.52 -35.34 -0.20 -3.59 16 4 S 0.11 1.94 22.90 -107.50 -2.46 -0.52 16 5 C -0.08 -1.73 6.43 -38.62 -0.25 -1.98 16 6 C -0.22 -4.90 9.82 -38.49 -0.38 -5.27 16 7 C 0.13 3.12 5.56 -106.93 -0.59 2.52 16 8 C -0.44 -10.32 9.03 -37.90 -0.34 -10.66 16 9 H 0.09 1.95 7.91 -52.49 -0.41 1.53 16 10 C 0.07 1.64 5.13 -17.34 -0.09 1.55 16 11 N -0.78 -18.09 10.96 55.54 0.61 -17.48 16 12 Si 0.92 16.69 29.59 -169.99 -5.03 11.66 16 13 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 14 H -0.28 -4.93 7.11 56.52 0.40 -4.53 16 15 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 16 C -0.13 -3.09 8.59 -39.47 -0.34 -3.43 16 17 C -0.07 -1.68 9.78 -39.37 -0.39 -2.07 16 18 C -0.17 -3.69 6.05 -104.95 -0.63 -4.32 16 19 C -0.01 -0.18 5.85 -105.92 -0.62 -0.80 16 20 C 0.29 5.62 14.43 -22.47 -0.32 5.30 16 21 N -0.45 -8.97 18.54 41.84 0.78 -8.19 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.97 7.52 -51.93 -0.39 0.58 16 27 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 29 H 0.13 3.06 6.16 -52.49 -0.32 2.74 16 30 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -24.69 283.97 -8.58 -33.27 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -2.80 Total: 1.95 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -3.95 Total: -24.97 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 1.38 Total: -25.67 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.46 Total: -0.52 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -24.69 -8.58 -33.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227214.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.616 kcal (2) G-P(sol) polarization free energy of solvation -24.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds