Wall clock time and date at job start Mon Mar 30 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47140 * 2 1 4 4 S 1.70000 * 123.94268 * 269.98105 * 3 2 1 5 5 C 1.75825 * 93.06265 * 180.02562 * 4 3 2 6 6 C 1.39068 * 130.24756 * 180.27059 * 5 4 3 7 7 C 1.40317 * 119.98977 * 180.19540 * 6 5 4 8 8 C 1.41068 * 120.15573 * 179.79205 * 7 6 5 9 9 H 1.08000 * 120.00268 * 24.42570 * 8 7 6 10 10 C 1.39877 * 119.99375 * 204.70963 * 8 7 6 11 11 N 1.30884 * 120.00602 * 17.55968 * 10 8 7 12 12 Si 1.86804 * 119.99562 * 197.56016 * 10 8 7 13 13 H 1.48499 * 109.47277 * 59.99823 * 12 10 8 14 14 H 1.48498 * 109.47140 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47195 * 299.99803 * 12 10 8 16 16 C 1.41175 * 119.68346 * 359.51306 * 7 6 5 17 17 C 1.35443 * 120.21194 * 0.24761 * 16 7 6 18 18 C 1.39983 * 109.93251 * 359.97438 * 5 4 3 19 19 C 1.35353 * 123.94536 * 89.99933 * 3 2 1 20 20 C 1.43203 * 123.08229 * 0.02562 * 19 3 2 21 21 N 3.70811 * 96.50755 * 71.18098 * 2 1 3 22 22 H 1.08994 * 109.47160 * 60.00417 * 1 2 3 23 23 H 1.09003 * 109.46915 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46955 * 299.99718 * 1 2 3 25 25 H 1.09001 * 109.47407 * 240.00189 * 2 1 3 26 26 H 1.08999 * 109.47482 * 120.00243 * 2 1 3 27 27 H 1.07997 * 120.00800 * 359.96116 * 6 5 4 28 28 H 0.96994 * 120.00172 * 180.02562 * 11 10 8 29 29 H 1.07997 * 119.89555 * 180.23625 * 16 7 6 30 30 H 1.08001 * 119.61743 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3491 2.3156 -1.4103 5 6 2.8526 3.7381 -0.5079 6 6 3.2870 4.9803 -0.9577 7 6 3.6446 5.9747 -0.0346 8 6 4.0899 7.2345 -0.4871 9 1 3.8011 7.5900 -1.4652 10 6 4.9103 8.0205 0.3287 11 7 5.5431 7.4776 1.3377 12 14 5.1030 9.8452 -0.0218 13 1 3.7763 10.5076 0.0590 14 1 6.0194 10.4476 0.9795 15 1 5.6669 10.0310 -1.3830 16 6 3.5510 5.7105 1.3490 17 6 3.1230 4.5015 1.7846 18 6 2.7632 3.4877 0.8665 19 6 2.2842 2.1334 1.1228 20 6 2.0984 1.6063 2.4413 21 7 1.9502 1.1885 3.4873 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.3528 5.1782 -2.0174 28 1 6.1117 8.0228 1.9036 29 1 3.8217 6.4747 2.0625 30 1 3.0554 4.3096 2.8452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227214.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:58 Heat of formation + Delta-G solvation = 31.625341 kcal Electronic energy + Delta-G solvation = -15514.954191 eV Core-core repulsion = 12978.932152 eV Total energy + Delta-G solvation = -2536.022038 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16845 -38.19694 -36.60119 -35.47293 -33.29282 -31.63904 -30.18290 -27.09587 -25.68829 -24.05617 -22.63880 -21.80817 -19.58786 -18.15486 -17.97164 -17.06766 -16.48074 -15.67195 -15.37409 -15.16250 -14.82549 -14.51422 -14.35995 -14.07496 -13.85842 -13.80953 -13.60419 -13.07524 -12.88633 -12.78721 -12.57025 -12.32145 -12.12112 -11.76664 -11.73404 -11.56910 -11.23745 -10.94624 -10.23606 -9.19331 -8.80825 -8.42477 -6.38010 -0.20146 0.72759 0.79724 0.99333 1.12115 1.41783 1.51102 1.54970 1.63994 2.18354 2.31348 2.70640 3.17428 3.57873 3.66138 4.13508 4.22837 4.38816 4.46886 4.73379 4.84237 4.91861 4.97948 5.00664 5.03644 5.16811 5.25044 5.34917 5.39443 5.70750 5.84642 5.94191 6.10345 6.43891 6.50248 6.79359 6.83525 8.20238 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.035688 B = 0.005483 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.386973 B = 5105.530000 C = 5733.434328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.168 4.168 4 S 0.195 5.805 5 C -0.112 4.112 6 C -0.227 4.227 7 C 0.100 3.900 8 C -0.472 4.472 9 H 0.090 0.910 10 C 0.037 3.963 11 N -0.813 5.813 12 Si 0.986 3.014 13 H -0.258 1.258 14 H -0.269 1.269 15 H -0.256 1.256 16 C -0.146 4.146 17 C -0.085 4.085 18 C -0.175 4.175 19 C -0.045 4.045 20 C 0.301 3.699 21 N -0.467 5.467 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.038 0.962 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.294 0.706 29 H 0.113 0.887 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 -6.287 -5.808 9.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C -0.289 4.289 4 S 0.462 5.538 5 C -0.227 4.227 6 C -0.253 4.253 7 C 0.094 3.906 8 C -0.501 4.501 9 H 0.108 0.892 10 C -0.180 4.180 11 N -0.437 5.437 12 Si 0.807 3.193 13 H -0.183 1.183 14 H -0.194 1.194 15 H -0.180 1.180 16 C -0.165 4.165 17 C -0.106 4.106 18 C -0.181 4.181 19 C -0.063 4.063 20 C -0.014 4.014 21 N -0.144 5.144 22 H 0.087 0.913 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.124 0.876 26 H 0.091 0.909 27 H 0.129 0.871 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.880 -7.278 -5.518 10.356 hybrid contribution 0.615 1.491 1.564 2.246 sum -4.265 -5.788 -3.954 8.205 Atomic orbital electron populations 1.21777 0.93073 1.03192 1.02127 1.20297 0.97193 0.87649 1.04315 1.24144 1.05780 1.02396 0.96625 1.82136 1.66347 1.01066 1.04237 1.22420 1.05057 0.99304 0.95877 1.20334 1.14954 0.91668 0.98314 1.17804 0.88605 0.92645 0.91529 1.19906 1.25976 1.00791 1.03398 0.89173 1.26865 0.92491 1.05510 0.93180 1.69863 1.19614 1.39920 1.14319 0.85166 0.79377 0.75255 0.79546 1.18266 1.19379 1.17960 1.21012 1.02220 0.96642 0.96656 1.20302 0.99950 0.93243 0.97096 1.18379 1.13425 0.93388 0.92905 1.15868 1.10815 0.93699 0.85918 1.25316 0.91982 0.91899 0.92236 1.81132 1.11680 1.10352 1.11277 0.91342 0.89759 0.94278 0.87638 0.90907 0.87060 0.89490 0.86868 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.89 71.98 0.71 -2.15 16 2 C -0.06 -1.25 6.01 29.85 0.18 -1.07 16 3 C -0.17 -5.12 5.52 25.02 0.14 -4.99 16 4 S 0.19 5.97 22.90 -56.49 -1.29 4.68 16 5 C -0.11 -4.69 6.43 22.89 0.15 -4.55 16 6 C -0.23 -10.40 9.82 22.98 0.23 -10.18 16 7 C 0.10 5.03 5.56 -21.36 -0.12 4.91 16 8 C -0.47 -23.21 9.03 23.36 0.21 -23.00 16 9 H 0.09 4.17 7.91 -2.91 -0.02 4.15 16 10 C 0.04 1.71 5.13 85.23 0.44 2.14 16 11 N -0.81 -39.50 10.96 21.82 0.24 -39.26 16 12 Si 0.99 34.77 29.59 68.60 2.03 36.80 16 13 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 14 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 15 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 16 C -0.15 -7.34 8.59 22.35 0.19 -7.15 16 17 C -0.09 -4.01 9.78 22.41 0.22 -3.79 16 18 C -0.17 -7.61 6.05 -20.08 -0.12 -7.74 16 19 C -0.04 -1.66 5.85 -20.71 -0.12 -1.78 16 20 C 0.30 11.33 14.43 88.33 1.27 12.60 16 21 N -0.47 -18.17 18.54 19.01 0.35 -17.82 16 22 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 1.70 7.52 -2.39 -0.02 1.68 16 27 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 28 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 29 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 30 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -54.75 283.97 5.87 -48.88 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.17 Total: 13.45 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 3.38 Total: -46.73 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.59 Total: -57.08 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.29 Total: 4.68 kcal Total: -54.75 5.87 -48.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227214.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.504 kcal (2) G-P(sol) polarization free energy of solvation -54.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds