Wall clock time and date at job start Mon Mar 30 2020 06:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47197 * 2 1 4 4 C 1.31651 * 122.54697 * 265.02869 * 3 2 1 5 5 S 1.75265 * 111.50578 * 180.02562 * 4 3 2 6 6 C 1.75984 * 92.24425 * 359.97438 * 5 4 3 7 7 C 1.40064 * 109.61136 * 359.72946 * 6 5 4 8 8 C 1.40456 * 119.21093 * 179.67421 * 7 6 5 9 9 C 1.40022 * 120.48198 * 0.59889 * 8 7 6 10 10 C 1.41350 * 119.96294 * 179.70563 * 9 8 7 11 11 H 1.07995 * 120.00050 * 334.38421 * 10 9 8 12 12 C 1.39837 * 119.99972 * 154.37243 * 10 9 8 13 13 N 1.30903 * 119.99916 * 343.06595 * 12 10 9 14 14 Si 1.86802 * 119.99890 * 163.06056 * 12 10 9 15 15 H 1.48506 * 109.47001 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47108 * 120.00123 * 14 12 10 17 17 H 1.48498 * 109.47248 * 240.00389 * 14 12 10 18 18 C 1.40767 * 120.07972 * 359.68754 * 9 8 7 19 19 C 1.38320 * 119.79031 * 0.02562 * 18 9 8 20 20 C 1.43204 * 119.82804 * 180.02562 * 19 18 9 21 21 N 7.27980 * 107.96272 * 12.82169 * 2 1 3 22 22 H 1.09003 * 109.46669 * 299.99891 * 1 2 3 23 23 H 1.09002 * 109.46790 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47068 * 59.99767 * 1 2 3 25 25 H 1.09000 * 109.47068 * 120.00233 * 2 1 3 26 26 H 1.09003 * 109.46669 * 240.00109 * 2 1 3 27 27 H 1.07994 * 124.24466 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.75704 * 180.31344 * 8 7 6 29 29 H 0.97003 * 119.99679 * 179.97438 * 13 12 10 30 30 H 1.08005 * 120.10718 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3591 2.0565 -1.1056 5 16 2.9058 3.6878 -0.7711 6 6 2.6736 3.4844 0.9614 7 6 2.1870 2.1972 1.2226 8 6 1.9354 1.8160 2.5509 9 6 2.1558 2.7148 3.6017 10 6 1.8930 2.3216 4.9337 11 1 1.1693 1.5457 5.1350 12 6 2.5703 2.9372 5.9910 13 7 3.6617 3.6217 5.7589 14 14 1.9174 2.7829 7.7344 15 1 0.6792 1.9631 7.7285 16 1 2.9398 2.1285 8.5897 17 1 1.6144 4.1341 8.2709 18 6 2.6390 4.0093 3.3332 19 6 2.8949 4.3905 2.0284 20 6 3.3870 5.7071 1.7544 21 7 3.7751 6.7523 1.5368 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.2980 1.6267 -2.0944 28 1 1.5649 0.8238 2.7628 29 1 4.1313 4.0490 6.4923 30 1 2.8087 4.7031 4.1434 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396227944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:24 Heat of formation + Delta-G solvation = 43.870101 kcal Electronic energy + Delta-G solvation = -15725.990046 eV Core-core repulsion = 13190.498981 eV Total energy + Delta-G solvation = -2535.491066 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.65101 -36.33306 -35.45101 -33.58654 -31.32604 -30.35298 -28.46285 -25.70030 -23.85102 -22.55465 -21.59698 -19.54558 -17.77801 -16.80834 -16.07628 -15.36352 -14.70662 -14.59570 -13.88423 -13.56293 -13.33632 -13.29902 -12.71553 -12.40726 -12.24376 -12.00903 -11.84743 -11.73458 -11.44987 -11.28339 -10.95999 -10.90501 -10.68419 -10.27859 -10.17829 -10.00827 -9.78666 -9.34731 -8.47963 -7.59414 -7.13815 -6.89796 -4.62945 1.62380 1.95403 2.38363 2.78897 2.81998 2.96476 3.01058 3.13297 3.39038 3.74551 3.86489 4.38942 4.78483 5.20606 5.28077 5.34370 5.50790 5.66770 5.90726 6.09869 6.12793 6.17163 6.39731 6.44992 6.49827 6.66258 6.86316 6.92848 6.99864 7.17180 7.35429 7.56550 7.78086 8.12486 8.25693 8.47426 8.55189 9.89388 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.007694 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.317341 B = 3638.132761 C = 4955.368765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C -0.078 4.078 4 C -0.205 4.205 5 S 0.014 5.986 6 C -0.192 4.192 7 C -0.033 4.033 8 C -0.179 4.179 9 C 0.105 3.895 10 C -0.448 4.448 11 H 0.088 0.912 12 C 0.073 3.927 13 N -0.790 5.790 14 Si 0.914 3.086 15 H -0.258 1.258 16 H -0.272 1.272 17 H -0.270 1.270 18 C -0.059 4.059 19 C -0.004 4.004 20 C 0.276 3.724 21 N -0.460 5.460 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.151 0.849 28 H 0.107 0.893 29 H 0.287 0.713 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -5.904 -4.640 8.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.091 4.091 4 C -0.338 4.338 5 S 0.276 5.724 6 C -0.308 4.308 7 C -0.039 4.039 8 C -0.203 4.203 9 C 0.101 3.899 10 C -0.477 4.477 11 H 0.106 0.894 12 C -0.146 4.146 13 N -0.415 5.415 14 Si 0.737 3.263 15 H -0.181 1.181 16 H -0.197 1.197 17 H -0.195 1.195 18 C -0.083 4.083 19 C -0.012 4.012 20 C -0.038 4.038 21 N -0.136 5.136 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.169 0.831 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.625 -2.971 -5.825 7.046 hybrid contribution -0.661 -1.497 1.688 2.351 sum -3.286 -4.467 -4.137 6.919 Atomic orbital electron populations 1.21719 0.95031 1.01053 1.02402 1.20225 0.95843 0.91945 1.02306 1.19727 1.01163 0.96631 0.91590 1.24465 1.09887 0.98179 1.01290 1.83667 1.73665 1.13429 1.01629 1.21730 1.16567 0.98606 0.93936 1.18680 1.00689 0.91266 0.93296 1.20884 1.10915 0.98931 0.89522 1.17277 0.89606 0.89763 0.93212 1.19615 1.20112 1.18247 0.89716 0.89384 1.25992 0.93307 0.92981 1.02347 1.69781 1.11884 1.24398 1.35398 0.86152 0.80170 0.79356 0.80584 1.18095 1.19747 1.19481 1.21594 0.97340 0.97128 0.92198 1.15214 1.07211 0.85485 0.93277 1.26131 0.92429 0.92998 0.92269 1.81060 1.11367 1.12115 1.09084 0.91977 0.92891 0.93013 0.90721 0.91741 0.83091 0.87513 0.90187 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.06 -0.87 6.04 -27.88 -0.17 -1.04 16 3 C -0.08 -1.34 5.23 -103.53 -0.54 -1.88 16 4 C -0.21 -3.36 10.72 28.86 0.31 -3.05 16 5 S 0.01 0.26 22.92 -107.50 -2.46 -2.20 16 6 C -0.19 -4.11 6.37 -37.57 -0.24 -4.35 16 7 C -0.03 -0.68 6.00 -105.42 -0.63 -1.31 16 8 C -0.18 -3.83 9.52 -38.08 -0.36 -4.19 16 9 C 0.11 2.44 5.54 -107.09 -0.59 1.85 16 10 C -0.45 -10.28 9.03 -37.80 -0.34 -10.63 16 11 H 0.09 1.92 7.90 -52.49 -0.41 1.50 16 12 C 0.07 1.62 5.14 -17.35 -0.09 1.53 16 13 N -0.79 -18.40 10.96 55.54 0.61 -17.79 16 14 Si 0.91 16.76 29.59 -169.99 -5.03 11.73 16 15 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 16 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 18 C -0.06 -1.37 8.33 -38.60 -0.32 -1.70 16 19 C 0.00 -0.08 5.75 -106.61 -0.61 -0.70 16 20 C 0.28 6.14 15.04 -22.47 -0.34 5.80 16 21 N -0.46 -10.38 18.54 41.84 0.78 -9.60 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.04 7.80 -51.93 -0.40 0.63 16 26 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.11 2.09 7.76 -52.48 -0.41 1.69 16 29 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 30 H 0.14 3.29 6.18 -52.48 -0.32 2.96 16 LS Contribution 284.43 15.07 4.29 4.29 Total: -1.00 -24.63 284.43 -8.18 -32.81 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -2.80 Total: 1.86 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -3.56 Total: -21.10 kcal Atomic # 7 Polarization: -28.77 SS G_CDS: 1.38 Total: -27.39 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.46 Total: -2.20 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -24.63 -8.18 -32.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.682 kcal (2) G-P(sol) polarization free energy of solvation -24.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds