Wall clock time and date at job start Mon Mar 30 2020 06:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47197 * 2 1 4 4 C 1.31651 * 122.54697 * 265.02869 * 3 2 1 5 5 S 1.75265 * 111.50578 * 180.02562 * 4 3 2 6 6 C 1.75984 * 92.24425 * 359.97438 * 5 4 3 7 7 C 1.40064 * 109.61136 * 359.72946 * 6 5 4 8 8 C 1.40456 * 119.21093 * 179.67421 * 7 6 5 9 9 C 1.40022 * 120.48198 * 0.59889 * 8 7 6 10 10 C 1.41350 * 119.96294 * 179.70563 * 9 8 7 11 11 H 1.07995 * 120.00050 * 334.38421 * 10 9 8 12 12 C 1.39837 * 119.99972 * 154.37243 * 10 9 8 13 13 N 1.30903 * 119.99916 * 343.06595 * 12 10 9 14 14 Si 1.86802 * 119.99890 * 163.06056 * 12 10 9 15 15 H 1.48506 * 109.47001 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47108 * 120.00123 * 14 12 10 17 17 H 1.48498 * 109.47248 * 240.00389 * 14 12 10 18 18 C 1.40767 * 120.07972 * 359.68754 * 9 8 7 19 19 C 1.38320 * 119.79031 * 0.02562 * 18 9 8 20 20 C 1.43204 * 119.82804 * 180.02562 * 19 18 9 21 21 N 7.27980 * 107.96272 * 12.82169 * 2 1 3 22 22 H 1.09003 * 109.46669 * 299.99891 * 1 2 3 23 23 H 1.09002 * 109.46790 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47068 * 59.99767 * 1 2 3 25 25 H 1.09000 * 109.47068 * 120.00233 * 2 1 3 26 26 H 1.09003 * 109.46669 * 240.00109 * 2 1 3 27 27 H 1.07994 * 124.24466 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.75704 * 180.31344 * 8 7 6 29 29 H 0.97003 * 119.99679 * 179.97438 * 13 12 10 30 30 H 1.08005 * 120.10718 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3591 2.0565 -1.1056 5 16 2.9058 3.6878 -0.7711 6 6 2.6736 3.4844 0.9614 7 6 2.1870 2.1972 1.2226 8 6 1.9354 1.8160 2.5509 9 6 2.1558 2.7148 3.6017 10 6 1.8930 2.3216 4.9337 11 1 1.1693 1.5457 5.1350 12 6 2.5703 2.9372 5.9910 13 7 3.6617 3.6217 5.7589 14 14 1.9174 2.7829 7.7344 15 1 0.6792 1.9631 7.7285 16 1 2.9398 2.1285 8.5897 17 1 1.6144 4.1341 8.2709 18 6 2.6390 4.0093 3.3332 19 6 2.8949 4.3905 2.0284 20 6 3.3870 5.7071 1.7544 21 7 3.7751 6.7523 1.5368 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.2980 1.6267 -2.0944 28 1 1.5649 0.8238 2.7628 29 1 4.1313 4.0490 6.4923 30 1 2.8087 4.7031 4.1434 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:23 Heat of formation + Delta-G solvation = 34.354658 kcal Electronic energy + Delta-G solvation = -15726.402667 eV Core-core repulsion = 13190.498981 eV Total energy + Delta-G solvation = -2535.903686 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25264 -37.93408 -37.11153 -35.18628 -32.66508 -31.99906 -29.99431 -27.37811 -25.10898 -24.20855 -23.09723 -21.09490 -19.25468 -18.49328 -17.68634 -16.96577 -16.19299 -16.14173 -15.26739 -15.14357 -14.88649 -14.65869 -14.15278 -14.08137 -13.79393 -13.62043 -13.30859 -13.21301 -12.79205 -12.74154 -12.51049 -12.38303 -11.95525 -11.66007 -11.63778 -11.54897 -11.31390 -10.98099 -10.10262 -9.22834 -8.78366 -8.47429 -6.36895 -0.00835 0.31897 0.89450 1.27747 1.31875 1.45261 1.59083 1.59528 1.63158 2.15890 2.21469 2.68506 3.03316 3.53791 3.91753 4.19318 4.40565 4.48066 4.64652 4.72863 4.83960 4.88140 5.07539 5.09804 5.19547 5.24921 5.30284 5.45646 5.48909 5.54832 5.79756 5.88553 6.08283 6.35551 6.49625 6.76544 6.82738 8.25164 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.007694 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.317341 B = 3638.132761 C = 4955.368765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.088 4.088 4 C -0.186 4.186 5 S 0.013 5.987 6 C -0.212 4.212 7 C -0.040 4.040 8 C -0.178 4.178 9 C 0.083 3.917 10 C -0.473 4.473 11 H 0.094 0.906 12 C 0.037 3.963 13 N -0.825 5.825 14 Si 0.981 3.019 15 H -0.251 1.251 16 H -0.269 1.269 17 H -0.270 1.270 18 C -0.078 4.078 19 C -0.012 4.012 20 C 0.280 3.720 21 N -0.468 5.468 22 H 0.040 0.960 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.193 0.807 28 H 0.121 0.879 29 H 0.292 0.708 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 -7.627 -5.842 10.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 C -0.101 4.101 4 C -0.319 4.319 5 S 0.275 5.725 6 C -0.329 4.329 7 C -0.047 4.047 8 C -0.201 4.201 9 C 0.079 3.921 10 C -0.503 4.503 11 H 0.112 0.888 12 C -0.179 4.179 13 N -0.450 5.450 14 Si 0.802 3.198 15 H -0.174 1.174 16 H -0.193 1.193 17 H -0.195 1.195 18 C -0.102 4.102 19 C -0.020 4.020 20 C -0.033 4.033 21 N -0.145 5.145 22 H 0.060 0.940 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.210 0.790 28 H 0.139 0.861 29 H 0.103 0.897 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.398 -4.702 -7.042 9.124 hybrid contribution -0.411 -0.985 1.895 2.175 sum -3.809 -5.687 -5.148 8.564 Atomic orbital electron populations 1.21701 0.94087 1.02439 1.01670 1.20318 0.96542 0.89612 1.03574 1.19978 1.01675 0.98305 0.90157 1.24899 1.07808 0.96317 1.02883 1.83671 1.73926 1.15703 0.99202 1.22069 1.16411 0.98878 0.95521 1.19109 0.99771 0.91526 0.94310 1.21083 1.10091 0.99177 0.89744 1.17557 0.90269 0.90090 0.94160 1.19866 1.20927 1.19251 0.90221 0.88808 1.26770 0.93034 0.92245 1.05876 1.69842 1.13034 1.25443 1.36697 0.85141 0.79658 0.79197 0.75778 1.17379 1.19348 1.19466 1.21465 0.99156 0.97340 0.92231 1.15303 1.07406 0.85725 0.93541 1.26181 0.92200 0.92976 0.91954 1.81039 1.11730 1.12210 1.09502 0.94046 0.90488 0.92414 0.91135 0.88816 0.79006 0.86128 0.89746 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.89 71.98 0.71 -2.37 16 2 C -0.06 -1.46 6.04 29.85 0.18 -1.28 16 3 C -0.09 -2.82 5.23 -18.60 -0.10 -2.91 16 4 C -0.19 -5.45 10.72 67.17 0.72 -4.73 16 5 S 0.01 0.48 22.92 -56.49 -1.29 -0.82 16 6 C -0.21 -9.06 6.37 23.57 0.15 -8.91 16 7 C -0.04 -1.63 6.00 -20.38 -0.12 -1.75 16 8 C -0.18 -7.63 9.52 23.24 0.22 -7.41 16 9 C 0.08 3.96 5.54 -21.46 -0.12 3.84 16 10 C -0.47 -22.20 9.03 23.42 0.21 -21.99 16 11 H 0.09 4.13 7.90 -2.91 -0.02 4.10 16 12 C 0.04 1.65 5.14 85.22 0.44 2.09 16 13 N -0.82 -39.61 10.96 21.81 0.24 -39.37 16 14 Si 0.98 34.48 29.59 68.60 2.03 36.51 16 15 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 16 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 17 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 18 C -0.08 -3.80 8.33 22.91 0.19 -3.61 16 19 C -0.01 -0.53 5.75 -21.15 -0.12 -0.66 16 20 C 0.28 12.75 15.04 88.33 1.33 14.08 16 21 N -0.47 -21.37 18.54 19.00 0.35 -21.01 16 22 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.77 7.80 -2.39 -0.02 1.75 16 26 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 27 H 0.19 4.04 8.06 -2.91 -0.02 4.01 16 28 H 0.12 4.69 7.76 -2.91 -0.02 4.67 16 29 H 0.29 12.79 8.30 -92.71 -0.77 12.02 16 30 H 0.12 6.17 6.18 -2.91 -0.02 6.15 16 Total: -1.00 -53.46 284.43 6.19 -47.27 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.17 Total: 13.02 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 3.69 Total: -35.61 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.59 Total: -60.38 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -1.29 Total: -0.82 kcal Total: -53.46 6.19 -47.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.629 kcal (2) G-P(sol) polarization free energy of solvation -53.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds