Wall clock time and date at job start Mon Mar 30 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47117 * 2 1 4 4 C 1.37602 * 119.82316 * 265.02190 * 3 2 1 5 5 C 1.38860 * 120.22799 * 179.97438 * 4 3 2 6 6 C 1.36102 * 120.48391 * 359.97438 * 5 4 3 7 7 C 1.41382 * 120.50252 * 0.04061 * 6 5 4 8 8 C 1.45561 * 128.70971 * 179.97438 * 7 6 5 9 9 C 1.43199 * 123.26371 * 359.97438 * 8 7 6 10 10 N 7.33766 * 105.64598 * 25.20126 * 2 1 3 11 11 C 1.38881 * 113.47079 * 179.97438 * 8 7 6 12 12 C 1.39155 * 124.64690 * 179.97438 * 11 8 7 13 13 H 1.08000 * 119.99419 * 0.02562 * 12 11 8 14 14 C 1.40629 * 120.00025 * 179.72574 * 12 11 8 15 15 N 1.30487 * 120.00198 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00113 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46783 * 60.00224 * 16 14 12 18 18 H 1.48496 * 109.47291 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47229 * 300.00411 * 16 14 12 20 20 S 1.75193 * 110.70899 * 0.26959 * 11 8 7 21 21 C 1.39889 * 118.93903 * 359.95664 * 7 6 5 22 22 H 1.08998 * 109.47477 * 59.99533 * 1 2 3 23 23 H 1.08999 * 109.47321 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46937 * 300.00013 * 1 2 3 25 25 H 1.08995 * 109.47319 * 240.00326 * 2 1 3 26 26 H 1.09000 * 109.47628 * 119.99703 * 2 1 3 27 27 H 1.07998 * 119.88880 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.76122 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.74952 * 179.97438 * 6 5 4 30 30 H 0.96995 * 120.00179 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3581 2.0315 -1.1893 5 6 2.8212 3.3406 -1.1991 6 6 2.9576 4.0335 -0.0356 7 6 2.6307 3.4310 1.2009 8 6 2.7075 3.9992 2.5389 9 6 3.1548 5.3341 2.8008 10 7 3.5089 6.3932 3.0086 11 6 2.3047 3.1211 3.5367 12 6 2.2858 3.4222 4.8951 13 1 2.5989 4.3979 5.2363 14 6 1.8529 2.4583 5.8230 15 7 1.4695 1.2813 5.4103 16 14 1.8268 2.8627 7.6465 17 1 0.9261 4.0191 7.8841 18 1 1.3342 1.6865 8.4074 19 1 3.1999 3.2038 8.0977 20 16 1.8318 1.5797 2.8516 21 6 2.1642 2.1122 1.2090 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2524 1.4912 -2.1184 28 1 3.0751 3.8124 -2.1369 29 1 3.3193 5.0509 -0.0570 30 1 1.1713 0.6162 6.0503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396228132.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:50 Heat of formation + Delta-G solvation = 20.738885 kcal Electronic energy + Delta-G solvation = -15792.297938 eV Core-core repulsion = 13255.803828 eV Total energy + Delta-G solvation = -2536.494111 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.54401 -35.97494 -34.67173 -33.75657 -32.65345 -29.38306 -28.62252 -26.02835 -23.60914 -22.48617 -20.75334 -20.52462 -18.06467 -16.34751 -16.06898 -15.39968 -14.57801 -14.35753 -13.97872 -13.51671 -12.97619 -12.93432 -12.75553 -12.34330 -12.07180 -11.81295 -11.79103 -11.71147 -11.39521 -11.24657 -11.04983 -10.74131 -10.60755 -10.45118 -10.17761 -10.09934 -9.48925 -9.29231 -8.36524 -7.70702 -7.50446 -6.52654 -5.08963 1.92921 2.23831 2.57286 2.70988 2.76235 2.97989 3.01579 3.36815 3.54666 4.16260 4.21125 4.45276 5.12381 5.33118 5.43023 5.71625 5.76712 5.80263 5.93386 6.01318 6.14960 6.27247 6.29476 6.33783 6.54348 6.60220 6.74928 6.98274 7.05391 7.29546 7.33989 7.43791 7.56802 7.79216 7.93791 8.06238 9.05213 9.27989 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.008411 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.384949 B = 3328.093787 C = 4558.855659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.026 4.026 4 C -0.175 4.175 5 C -0.106 4.106 6 C -0.145 4.145 7 C 0.042 3.958 8 C -0.303 4.303 9 C 0.324 3.676 10 N -0.536 5.536 11 C 0.079 3.921 12 C -0.353 4.353 13 H 0.104 0.896 14 C 0.056 3.944 15 N -0.749 5.749 16 Si 0.941 3.059 17 H -0.255 1.255 18 H -0.268 1.268 19 H -0.255 1.255 20 S 0.168 5.832 21 C -0.237 4.237 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 -6.776 -2.589 7.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.030 4.030 4 C -0.195 4.195 5 C -0.126 4.126 6 C -0.165 4.165 7 C 0.034 3.966 8 C -0.315 4.315 9 C 0.015 3.985 10 N -0.217 5.217 11 C -0.043 4.043 12 C -0.386 4.386 13 H 0.122 0.878 14 C -0.170 4.170 15 N -0.373 5.373 16 Si 0.762 3.238 17 H -0.179 1.179 18 H -0.192 1.192 19 H -0.178 1.178 20 S 0.428 5.572 21 C -0.351 4.351 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.704 -6.697 -1.599 7.397 hybrid contribution 0.402 1.122 -0.064 1.194 sum -2.302 -5.575 -1.663 6.256 Atomic orbital electron populations 1.21702 0.95097 1.00941 1.02410 1.20504 0.96061 0.93498 1.02010 1.19073 0.98129 0.94668 0.91151 1.20438 1.07118 0.95785 0.96196 1.20316 1.00629 0.94766 0.96892 1.20482 1.05116 0.99370 0.91516 1.18564 0.94642 0.91887 0.91548 1.15352 1.34386 0.90655 0.91093 1.25080 0.90407 0.91597 0.91402 1.81010 1.17799 1.13111 1.09812 1.21329 0.92832 0.94739 0.95442 1.19502 1.29389 1.00213 0.89522 0.87840 1.26511 0.92146 0.93725 1.04667 1.68470 1.25175 1.04254 1.39443 0.85733 0.80888 0.79814 0.77331 1.17851 1.19186 1.17845 1.84772 1.70671 1.12395 0.89349 1.23416 1.11893 0.98518 1.01294 0.92963 0.93040 0.91976 0.91783 0.91224 0.87483 0.87592 0.87958 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 37.16 0.37 -1.67 16 2 C -0.08 -1.29 5.86 -27.88 -0.16 -1.45 16 3 C -0.03 -0.48 5.16 -104.23 -0.54 -1.02 16 4 C -0.18 -3.10 9.65 -39.58 -0.38 -3.48 16 5 C -0.11 -1.93 9.96 -40.12 -0.40 -2.33 16 6 C -0.14 -3.04 9.79 -39.15 -0.38 -3.43 16 7 C 0.04 0.97 6.01 -105.17 -0.63 0.34 16 8 C -0.30 -7.45 5.95 -104.82 -0.62 -8.07 16 9 C 0.32 8.13 14.54 -22.48 -0.33 7.80 16 10 N -0.54 -13.65 18.54 41.83 0.78 -12.87 16 11 C 0.08 1.91 6.13 -39.00 -0.24 1.67 16 12 C -0.35 -8.20 8.92 -38.34 -0.34 -8.54 16 13 H 0.10 2.42 7.37 -52.49 -0.39 2.03 16 14 C 0.06 1.15 5.51 -17.22 -0.09 1.05 16 15 N -0.75 -15.40 10.54 55.58 0.59 -14.81 16 16 Si 0.94 15.68 29.57 -169.99 -5.03 10.65 16 17 H -0.25 -4.30 7.11 56.52 0.40 -3.90 16 18 H -0.27 -4.19 7.11 56.52 0.40 -3.79 16 19 H -0.25 -4.30 7.11 56.52 0.40 -3.90 16 20 S 0.17 3.65 19.34 -107.50 -2.08 1.57 16 21 C -0.24 -5.14 6.28 -38.34 -0.24 -5.38 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 26 H 0.07 1.10 7.73 -51.93 -0.40 0.70 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.10 2.10 8.03 -52.49 -0.42 1.68 16 30 H 0.31 5.59 8.29 -40.82 -0.34 5.25 16 LS Contribution 282.95 15.07 4.26 4.26 Total: -1.00 -25.45 282.95 -8.35 -33.80 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -2.87 Total: 1.91 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -4.00 Total: -24.52 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: 1.36 Total: -27.68 kcal Atomic # 14 Polarization: 15.68 SS G_CDS: -5.03 Total: 10.65 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -2.08 Total: 1.57 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -25.45 -8.35 -33.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228132.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.543 kcal (2) G-P(sol) polarization free energy of solvation -25.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds