Wall clock time and date at job start Mon Mar 30 2020 06:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47117 * 2 1 4 4 C 1.37602 * 119.82316 * 265.02190 * 3 2 1 5 5 C 1.38860 * 120.22799 * 179.97438 * 4 3 2 6 6 C 1.36102 * 120.48391 * 359.97438 * 5 4 3 7 7 C 1.41382 * 120.50252 * 0.04061 * 6 5 4 8 8 C 1.45561 * 128.70971 * 179.97438 * 7 6 5 9 9 C 1.43199 * 123.26371 * 359.97438 * 8 7 6 10 10 N 7.33766 * 105.64598 * 25.20126 * 2 1 3 11 11 C 1.38881 * 113.47079 * 179.97438 * 8 7 6 12 12 C 1.39155 * 124.64690 * 179.97438 * 11 8 7 13 13 H 1.08000 * 119.99419 * 0.02562 * 12 11 8 14 14 C 1.40629 * 120.00025 * 179.72574 * 12 11 8 15 15 N 1.30487 * 120.00198 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00113 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46783 * 60.00224 * 16 14 12 18 18 H 1.48496 * 109.47291 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47229 * 300.00411 * 16 14 12 20 20 S 1.75193 * 110.70899 * 0.26959 * 11 8 7 21 21 C 1.39889 * 118.93903 * 359.95664 * 7 6 5 22 22 H 1.08998 * 109.47477 * 59.99533 * 1 2 3 23 23 H 1.08999 * 109.47321 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46937 * 300.00013 * 1 2 3 25 25 H 1.08995 * 109.47319 * 240.00326 * 2 1 3 26 26 H 1.09000 * 109.47628 * 119.99703 * 2 1 3 27 27 H 1.07998 * 119.88880 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.76122 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.74952 * 179.97438 * 6 5 4 30 30 H 0.96995 * 120.00179 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3581 2.0315 -1.1893 5 6 2.8212 3.3406 -1.1991 6 6 2.9576 4.0335 -0.0356 7 6 2.6307 3.4310 1.2009 8 6 2.7075 3.9992 2.5389 9 6 3.1548 5.3341 2.8008 10 7 3.5089 6.3932 3.0086 11 6 2.3047 3.1211 3.5367 12 6 2.2858 3.4222 4.8951 13 1 2.5989 4.3979 5.2363 14 6 1.8529 2.4583 5.8230 15 7 1.4695 1.2813 5.4103 16 14 1.8268 2.8627 7.6465 17 1 0.9261 4.0191 7.8841 18 1 1.3342 1.6865 8.4074 19 1 3.1999 3.2038 8.0977 20 16 1.8318 1.5797 2.8516 21 6 2.1642 2.1122 1.2090 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2524 1.4912 -2.1184 28 1 3.0751 3.8124 -2.1369 29 1 3.3193 5.0509 -0.0570 30 1 1.1713 0.6162 6.0503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396228132.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:49 Heat of formation + Delta-G solvation = 10.208617 kcal Electronic energy + Delta-G solvation = -15792.754565 eV Core-core repulsion = 13255.803828 eV Total energy + Delta-G solvation = -2536.950737 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09309 -37.71927 -36.47055 -35.26038 -34.17542 -31.02995 -30.01678 -27.71393 -25.05808 -24.01692 -22.40379 -22.00605 -19.71049 -17.99443 -17.70128 -16.92231 -16.03324 -15.92799 -15.42383 -14.96994 -14.62684 -14.38987 -14.25599 -13.89280 -13.77277 -13.50721 -13.39839 -13.28395 -12.88030 -12.74988 -12.52512 -12.10570 -11.98998 -11.89728 -11.72084 -11.57978 -11.06723 -10.94979 -9.95871 -9.34603 -9.09859 -8.19073 -6.85453 0.32907 0.67723 0.98943 1.28668 1.32174 1.47684 1.55224 1.74315 2.06579 2.23651 2.45824 2.83249 3.33500 3.89691 4.06362 4.20854 4.33576 4.51963 4.60317 4.64757 4.69975 4.80193 4.93255 5.13750 5.15180 5.25828 5.35140 5.42013 5.51941 5.69155 5.74175 5.87760 5.92109 6.10444 6.31263 6.40699 7.10948 7.72834 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.008411 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.384949 B = 3328.093787 C = 4558.855659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.032 4.032 4 C -0.165 4.165 5 C -0.097 4.097 6 C -0.168 4.168 7 C 0.012 3.988 8 C -0.337 4.337 9 C 0.323 3.677 10 N -0.560 5.560 11 C 0.051 3.949 12 C -0.374 4.374 13 H 0.090 0.910 14 C 0.028 3.972 15 N -0.757 5.757 16 Si 1.004 2.996 17 H -0.259 1.259 18 H -0.243 1.243 19 H -0.259 1.259 20 S 0.179 5.821 21 C -0.254 4.254 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.149 0.851 28 H 0.142 0.858 29 H 0.095 0.905 30 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 -8.941 -3.501 10.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.036 4.036 4 C -0.185 4.185 5 C -0.116 4.116 6 C -0.188 4.188 7 C 0.004 3.996 8 C -0.350 4.350 9 C 0.016 3.984 10 N -0.243 5.243 11 C -0.072 4.072 12 C -0.407 4.407 13 H 0.108 0.892 14 C -0.197 4.197 15 N -0.381 5.381 16 Si 0.821 3.179 17 H -0.183 1.183 18 H -0.165 1.165 19 H -0.183 1.183 20 S 0.439 5.561 21 C -0.368 4.368 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.057 0.943 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.113 0.887 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.420 -8.879 -2.544 9.849 hybrid contribution 0.597 1.692 0.103 1.797 sum -2.822 -7.187 -2.441 8.098 Atomic orbital electron populations 1.21682 0.94049 1.02440 1.01654 1.20586 0.96864 0.91354 1.03155 1.19578 0.97283 0.96300 0.90456 1.20945 1.04784 0.95491 0.97307 1.20741 0.98730 0.95019 0.97156 1.20619 1.06545 0.99614 0.92055 1.18787 0.96172 0.92956 0.91663 1.15684 1.36207 0.90630 0.92458 1.25394 0.90152 0.91880 0.90924 1.80957 1.19283 1.13628 1.10437 1.21665 0.93444 0.96063 0.95991 1.19711 1.30235 1.00638 0.90138 0.89153 1.27253 0.91295 0.93177 1.08007 1.68441 1.23717 1.04638 1.41312 0.84853 0.80466 0.80225 0.72335 1.18296 1.16525 1.18275 1.84382 1.70864 1.11082 0.89735 1.23666 1.12503 0.98382 1.02207 0.92157 0.90446 0.94299 0.88737 0.91969 0.83382 0.84052 0.88702 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.89 71.98 0.71 -2.88 16 2 C -0.08 -2.30 5.86 29.85 0.17 -2.12 16 3 C -0.03 -1.13 5.16 -19.61 -0.10 -1.23 16 4 C -0.17 -5.25 9.65 22.27 0.21 -5.04 16 5 C -0.10 -3.29 9.96 21.92 0.22 -3.08 16 6 C -0.17 -7.11 9.79 22.55 0.22 -6.89 16 7 C 0.01 0.58 6.01 -20.22 -0.12 0.46 16 8 C -0.34 -17.44 5.95 -19.99 -0.12 -17.56 16 9 C 0.32 17.12 14.54 88.33 1.28 18.41 16 10 N -0.56 -29.90 18.54 19.00 0.35 -29.55 16 11 C 0.05 2.55 6.13 22.64 0.14 2.69 16 12 C -0.37 -18.02 8.92 23.07 0.21 -17.81 16 13 H 0.09 4.46 7.37 -2.91 -0.02 4.44 16 14 C 0.03 1.14 5.51 85.48 0.47 1.61 16 15 N -0.76 -30.66 10.54 21.95 0.23 -30.43 16 16 Si 1.00 31.34 29.57 68.60 2.03 33.37 16 17 H -0.26 -8.23 7.11 99.48 0.71 -7.52 16 18 H -0.24 -6.57 7.11 99.48 0.71 -5.87 16 19 H -0.26 -8.22 7.11 99.48 0.71 -7.51 16 20 S 0.18 7.93 19.34 -56.49 -1.09 6.83 16 21 C -0.25 -11.02 6.28 23.07 0.14 -10.87 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.09 2.09 8.04 -2.39 -0.02 2.07 16 26 H 0.06 1.84 7.73 -2.39 -0.02 1.82 16 27 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 29 H 0.09 4.02 8.03 -2.91 -0.02 4.00 16 30 H 0.33 11.22 8.29 -92.71 -0.77 10.45 16 Total: -1.00 -57.00 282.95 6.13 -50.87 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.16 Total: 13.22 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 3.44 Total: -44.30 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.58 Total: -59.98 kcal Atomic # 14 Polarization: 31.34 SS G_CDS: 2.03 Total: 33.37 kcal Atomic # 16 Polarization: 7.93 SS G_CDS: -1.09 Total: 6.83 kcal Total: -57.00 6.13 -50.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228132.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.077 kcal (2) G-P(sol) polarization free energy of solvation -56.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds