Wall clock time and date at job start Mon Mar 30 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47038 * 2 1 4 4 C 1.41602 * 119.96196 * 89.99475 * 3 2 1 5 5 C 1.39896 * 128.43648 * 0.02562 * 4 3 2 6 6 C 1.36884 * 115.01385 * 179.97438 * 5 4 3 7 7 C 1.39916 * 124.79909 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00320 * 0.02562 * 7 6 5 9 9 C 1.40190 * 119.99826 * 180.02562 * 7 6 5 10 10 N 1.30746 * 120.00254 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99914 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47105 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46886 * 120.00008 * 11 9 7 14 14 H 1.48495 * 109.47168 * 239.99833 * 11 9 7 15 15 S 1.75436 * 110.39831 * 359.97438 * 6 5 4 16 16 C 1.40511 * 118.68576 * 179.97438 * 4 3 2 17 17 C 1.39882 * 120.04461 * 0.02562 * 16 4 3 18 18 C 1.36200 * 120.79077 * 359.97386 * 17 16 4 19 19 C 1.38499 * 119.95198 * 270.23141 * 3 2 1 20 20 C 1.43202 * 119.92567 * 0.02562 * 19 3 2 21 21 N 3.54016 * 94.70283 * 284.14624 * 2 1 3 22 22 H 1.09009 * 109.47333 * 60.00660 * 1 2 3 23 23 H 1.09002 * 109.47422 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47407 * 300.00138 * 1 2 3 25 25 H 1.08994 * 109.47417 * 239.99399 * 2 1 3 26 26 H 1.09003 * 109.46750 * 119.99706 * 2 1 3 27 27 H 1.08003 * 122.49218 * 0.02562 * 5 4 3 28 28 H 0.97005 * 120.00788 * 179.97438 * 10 9 7 29 29 H 1.07994 * 119.60063 * 179.97438 * 17 16 4 30 30 H 1.08002 * 119.87566 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2679 2.0876 1.2268 5 6 2.0966 1.6019 2.5275 6 6 2.4103 2.4883 3.5223 7 6 2.3157 2.2178 4.8918 8 1 1.9745 1.2501 5.2289 9 6 2.6636 3.2030 5.8265 10 7 3.0771 4.3744 5.4185 11 14 2.5366 2.8422 7.6550 12 1 2.0473 1.4541 7.8528 13 1 3.8744 2.9891 8.2826 14 1 1.5878 3.7964 8.2830 15 16 2.9492 4.0108 2.8372 16 6 2.7367 3.4118 1.1955 17 6 2.9612 4.0465 -0.0307 18 6 2.7313 3.3959 -1.2049 19 6 2.2582 2.0744 -1.2000 20 6 2.0134 1.3987 -2.4386 21 7 1.8202 0.8623 -3.4212 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.7439 0.6017 2.7315 28 1 3.3176 5.0562 6.0652 29 1 3.3211 5.0646 -0.0464 30 1 2.9092 3.9002 -2.1432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:28 Heat of formation + Delta-G solvation = 28.729777 kcal Electronic energy + Delta-G solvation = -15670.953653 eV Core-core repulsion = 13134.806054 eV Total energy + Delta-G solvation = -2536.147599 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.94989 -36.13056 -35.00796 -33.50523 -33.23150 -29.50264 -28.78152 -25.69095 -23.77085 -22.75946 -20.83873 -19.76743 -17.92302 -17.23242 -16.00258 -15.46410 -14.90648 -14.20547 -13.71468 -13.43288 -13.20708 -13.13171 -12.97203 -12.45294 -12.26522 -11.97745 -11.86624 -11.79271 -11.54939 -11.47587 -11.28051 -10.67041 -10.57935 -10.43403 -10.24464 -9.92246 -9.47390 -9.20528 -8.46931 -7.57731 -7.30921 -6.55841 -4.81733 1.56459 1.90695 2.71025 2.78655 2.86062 3.09974 3.16465 3.31489 3.48485 3.69623 3.71556 4.51387 4.55554 4.89336 5.33086 5.46744 5.73438 5.83244 5.90252 6.09494 6.24143 6.30551 6.44644 6.53108 6.56661 6.63576 6.87487 6.99407 7.16663 7.19362 7.34246 7.54744 7.73238 7.85722 7.99891 8.14583 8.28041 9.52771 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.035294 B = 0.005945 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.148575 B = 4708.940754 C = 5409.704359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.053 4.053 4 C 0.018 3.982 5 C -0.355 4.355 6 C 0.052 3.948 7 C -0.380 4.380 8 H 0.101 0.899 9 C 0.053 3.947 10 N -0.775 5.775 11 Si 0.938 3.062 12 H -0.255 1.255 13 H -0.267 1.267 14 H -0.267 1.267 15 S 0.154 5.846 16 C -0.247 4.247 17 C -0.055 4.055 18 C -0.151 4.151 19 C -0.036 4.036 20 C 0.279 3.721 21 N -0.462 5.462 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.303 0.697 29 H 0.111 0.889 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 0.107 0.681 0.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.058 4.058 4 C 0.010 3.990 5 C -0.379 4.379 6 C -0.067 4.067 7 C -0.414 4.414 8 H 0.119 0.881 9 C -0.168 4.168 10 N -0.401 5.401 11 Si 0.761 3.239 12 H -0.178 1.178 13 H -0.192 1.192 14 H -0.192 1.192 15 S 0.416 5.584 16 C -0.363 4.363 17 C -0.077 4.077 18 C -0.174 4.174 19 C -0.042 4.042 20 C -0.034 4.034 21 N -0.139 5.139 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.203 0.841 -0.100 0.870 hybrid contribution -0.396 -1.151 0.500 1.316 sum -0.599 -0.311 0.400 0.784 Atomic orbital electron populations 1.21695 0.95121 1.00912 1.02185 1.20435 0.95982 0.93330 1.02040 1.19637 1.00531 0.95074 0.90563 1.17685 0.96753 0.92101 0.92464 1.19555 1.27209 1.01783 0.89380 1.21439 0.94481 0.94301 0.96518 1.19401 1.32933 1.00085 0.88953 0.88123 1.26330 0.92481 0.93904 1.04128 1.68575 1.28997 1.04095 1.38477 0.85709 0.79311 0.80389 0.78506 1.17819 1.19170 1.19166 1.84935 1.69430 1.15017 0.89042 1.23987 1.11504 0.99330 1.01488 1.19785 0.99400 0.98345 0.90171 1.20068 1.06556 0.93246 0.97490 1.15492 1.08918 0.94380 0.85446 1.26014 0.92316 0.92357 0.92742 1.81124 1.11188 1.09857 1.11746 0.93338 0.93093 0.91832 0.92482 0.90506 0.87149 0.88411 0.87134 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.89 37.16 0.37 -1.86 16 2 C -0.08 -1.38 5.44 -27.88 -0.15 -1.53 16 3 C -0.05 -1.04 5.25 -103.25 -0.54 -1.58 16 4 C 0.02 0.40 5.82 -107.14 -0.62 -0.22 16 5 C -0.35 -8.11 9.56 -39.45 -0.38 -8.48 16 6 C 0.05 1.24 6.11 -39.44 -0.24 1.00 16 7 C -0.38 -8.67 9.27 -38.22 -0.35 -9.03 16 8 H 0.10 2.17 7.85 -52.48 -0.41 1.76 16 9 C 0.05 1.12 5.50 -17.28 -0.10 1.03 16 10 N -0.78 -16.82 10.58 55.56 0.59 -16.24 16 11 Si 0.94 15.79 29.56 -169.99 -5.03 10.76 16 12 H -0.25 -4.26 7.11 56.52 0.40 -3.86 16 13 H -0.27 -4.44 7.11 56.52 0.40 -4.04 16 14 H -0.27 -4.44 7.11 56.52 0.40 -4.04 16 15 S 0.15 3.46 20.12 -107.50 -2.16 1.29 16 16 C -0.25 -5.35 6.48 -38.11 -0.25 -5.59 16 17 C -0.05 -1.03 9.98 -39.70 -0.40 -1.42 16 18 C -0.15 -2.68 9.69 -39.52 -0.38 -3.06 16 19 C -0.04 -0.67 5.72 -107.07 -0.61 -1.29 16 20 C 0.28 5.11 13.72 -22.47 -0.31 4.80 16 21 N -0.46 -8.78 18.54 41.84 0.78 -8.01 16 22 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.95 7.05 -51.93 -0.37 0.58 16 26 H 0.08 1.30 7.14 -51.93 -0.37 0.93 16 27 H 0.11 2.41 7.36 -52.48 -0.39 2.02 16 28 H 0.30 5.84 8.29 -40.82 -0.34 5.50 16 29 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 30 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 280.77 15.07 4.23 4.23 Total: -1.00 -24.09 280.77 -8.34 -32.43 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -2.78 Total: 2.78 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -3.96 Total: -27.25 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 1.36 Total: -24.24 kcal Atomic # 14 Polarization: 15.79 SS G_CDS: -5.03 Total: 10.76 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -2.16 Total: 1.29 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -24.09 -8.34 -32.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.157 kcal (2) G-P(sol) polarization free energy of solvation -24.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds