Wall clock time and date at job start Mon Mar 30 2020 06:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47038 * 2 1 4 4 C 1.41602 * 119.96196 * 89.99475 * 3 2 1 5 5 C 1.39896 * 128.43648 * 0.02562 * 4 3 2 6 6 C 1.36884 * 115.01385 * 179.97438 * 5 4 3 7 7 C 1.39916 * 124.79909 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00320 * 0.02562 * 7 6 5 9 9 C 1.40190 * 119.99826 * 180.02562 * 7 6 5 10 10 N 1.30746 * 120.00254 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99914 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47105 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46886 * 120.00008 * 11 9 7 14 14 H 1.48495 * 109.47168 * 239.99833 * 11 9 7 15 15 S 1.75436 * 110.39831 * 359.97438 * 6 5 4 16 16 C 1.40511 * 118.68576 * 179.97438 * 4 3 2 17 17 C 1.39882 * 120.04461 * 0.02562 * 16 4 3 18 18 C 1.36200 * 120.79077 * 359.97386 * 17 16 4 19 19 C 1.38499 * 119.95198 * 270.23141 * 3 2 1 20 20 C 1.43202 * 119.92567 * 0.02562 * 19 3 2 21 21 N 3.54016 * 94.70283 * 284.14624 * 2 1 3 22 22 H 1.09009 * 109.47333 * 60.00660 * 1 2 3 23 23 H 1.09002 * 109.47422 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47407 * 300.00138 * 1 2 3 25 25 H 1.08994 * 109.47417 * 239.99399 * 2 1 3 26 26 H 1.09003 * 109.46750 * 119.99706 * 2 1 3 27 27 H 1.08003 * 122.49218 * 0.02562 * 5 4 3 28 28 H 0.97005 * 120.00788 * 179.97438 * 10 9 7 29 29 H 1.07994 * 119.60063 * 179.97438 * 17 16 4 30 30 H 1.08002 * 119.87566 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2679 2.0876 1.2268 5 6 2.0966 1.6019 2.5275 6 6 2.4103 2.4883 3.5223 7 6 2.3157 2.2178 4.8918 8 1 1.9745 1.2501 5.2289 9 6 2.6636 3.2030 5.8265 10 7 3.0771 4.3744 5.4185 11 14 2.5366 2.8422 7.6550 12 1 2.0473 1.4541 7.8528 13 1 3.8744 2.9891 8.2826 14 1 1.5878 3.7964 8.2830 15 16 2.9492 4.0108 2.8372 16 6 2.7367 3.4118 1.1955 17 6 2.9612 4.0465 -0.0307 18 6 2.7313 3.3959 -1.2049 19 6 2.2582 2.0744 -1.2000 20 6 2.0134 1.3987 -2.4386 21 7 1.8202 0.8623 -3.4212 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.7439 0.6017 2.7315 28 1 3.3176 5.0562 6.0652 29 1 3.3211 5.0646 -0.0464 30 1 2.9092 3.9002 -2.1432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:27 Heat of formation + Delta-G solvation = 19.882177 kcal Electronic energy + Delta-G solvation = -15671.337314 eV Core-core repulsion = 13134.806054 eV Total energy + Delta-G solvation = -2536.531260 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49978 -37.67135 -36.61510 -34.92996 -34.82888 -31.09538 -30.28004 -27.30156 -25.28102 -24.26610 -22.39852 -21.33196 -19.56686 -18.78953 -17.58878 -17.02302 -16.36739 -15.73288 -15.21002 -14.89745 -14.71696 -14.58005 -14.39816 -14.01468 -13.79518 -13.45393 -13.39021 -13.30308 -13.05498 -12.96416 -12.67504 -12.11716 -11.95244 -11.93451 -11.77769 -11.44370 -11.03818 -10.90629 -10.04444 -9.22692 -8.89126 -8.23977 -6.51604 0.01667 0.32943 1.32245 1.38801 1.42633 1.57774 1.68301 1.79333 1.91599 2.16386 2.16990 2.91857 3.03575 3.26147 3.90937 4.08272 4.32378 4.48445 4.53819 4.66237 4.78683 4.94703 4.96642 4.99203 5.04623 5.30086 5.34886 5.46786 5.53935 5.63418 5.71472 5.91377 6.08560 6.23396 6.46553 6.51895 6.60303 7.97889 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.035294 B = 0.005945 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.148575 B = 4708.940754 C = 5409.704359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 C -0.056 4.056 4 C -0.002 4.002 5 C -0.373 4.373 6 C 0.023 3.977 7 C -0.412 4.412 8 H 0.102 0.898 9 C 0.020 3.980 10 N -0.799 5.799 11 Si 1.008 2.992 12 H -0.254 1.254 13 H -0.260 1.260 14 H -0.260 1.260 15 S 0.139 5.861 16 C -0.262 4.262 17 C -0.061 4.061 18 C -0.133 4.133 19 C -0.038 4.038 20 C 0.292 3.708 21 N -0.469 5.469 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.312 0.688 29 H 0.136 0.864 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 0.211 0.091 0.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.117 4.117 3 C -0.061 4.061 4 C -0.011 4.011 5 C -0.397 4.397 6 C -0.096 4.096 7 C -0.445 4.445 8 H 0.120 0.880 9 C -0.199 4.199 10 N -0.426 5.426 11 Si 0.827 3.173 12 H -0.178 1.178 13 H -0.185 1.185 14 H -0.184 1.184 15 S 0.400 5.600 16 C -0.378 4.378 17 C -0.083 4.083 18 C -0.156 4.156 19 C -0.044 4.044 20 C -0.022 4.022 21 N -0.146 5.146 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.154 0.846 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.236 0.946 -0.715 1.209 hybrid contribution -0.378 -1.177 0.504 1.336 sum -0.614 -0.231 -0.211 0.689 Atomic orbital electron populations 1.21644 0.93924 1.02303 1.01450 1.20465 0.96955 0.92011 1.02252 1.19869 0.99988 0.96141 0.90139 1.17847 0.97657 0.92691 0.92856 1.19654 1.28193 1.01806 0.90056 1.21762 0.95441 0.95045 0.97376 1.19677 1.34493 1.00973 0.89357 0.88039 1.27179 0.91410 0.93273 1.08008 1.68603 1.28976 1.04828 1.40159 0.84707 0.79498 0.80151 0.72971 1.17759 1.18459 1.18441 1.84718 1.70055 1.15074 0.90152 1.24234 1.12062 0.99593 1.01954 1.20101 0.99253 0.99584 0.89361 1.20469 1.03986 0.92652 0.98507 1.15599 1.08720 0.94880 0.85233 1.25764 0.92005 0.92055 0.92353 1.81152 1.11376 1.10009 1.12017 0.93460 0.90703 0.93076 0.91695 0.90766 0.87340 0.87401 0.84606 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.89 71.98 0.71 -3.40 16 2 C -0.08 -2.65 5.44 29.85 0.16 -2.49 16 3 C -0.06 -2.16 5.25 -18.97 -0.10 -2.26 16 4 C 0.00 -0.10 5.82 -21.49 -0.13 -0.23 16 5 C -0.37 -17.59 9.56 22.35 0.21 -17.37 16 6 C 0.02 1.13 6.11 22.36 0.14 1.26 16 7 C -0.41 -19.38 9.27 23.15 0.21 -19.16 16 8 H 0.10 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.02 0.86 5.50 85.33 0.47 1.33 16 10 N -0.80 -35.05 10.58 21.87 0.23 -34.82 16 11 Si 1.01 31.96 29.56 68.60 2.03 33.99 16 12 H -0.25 -7.94 7.11 99.48 0.71 -7.24 16 13 H -0.26 -7.92 7.11 99.48 0.71 -7.21 16 14 H -0.26 -7.91 7.11 99.48 0.71 -7.20 16 15 S 0.14 6.36 20.12 -56.49 -1.14 5.23 16 16 C -0.26 -11.33 6.48 23.22 0.15 -11.18 16 17 C -0.06 -2.18 9.98 22.19 0.22 -1.96 16 18 C -0.13 -4.35 9.69 22.31 0.22 -4.14 16 19 C -0.04 -1.34 5.72 -21.45 -0.12 -1.47 16 20 C 0.29 9.92 13.72 88.33 1.21 11.13 16 21 N -0.47 -16.62 18.54 19.00 0.35 -16.26 16 22 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 2.05 7.05 -2.39 -0.02 2.03 16 26 H 0.07 2.50 7.14 -2.39 -0.02 2.49 16 27 H 0.11 4.95 7.36 -2.91 -0.02 4.93 16 28 H 0.31 12.04 8.29 -92.70 -0.77 11.27 16 29 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -51.41 280.77 6.00 -45.41 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 1.17 Total: 16.38 kcal Atomic # 6 Polarization: -53.28 SS G_CDS: 3.36 Total: -49.92 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.58 Total: -51.08 kcal Atomic # 14 Polarization: 31.96 SS G_CDS: 2.03 Total: 33.99 kcal Atomic # 16 Polarization: 6.36 SS G_CDS: -1.14 Total: 5.23 kcal Total: -51.41 6.00 -45.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.290 kcal (2) G-P(sol) polarization free energy of solvation -51.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds