Wall clock time and date at job start Mon Mar 30 2020 06:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46999 * 2 1 4 4 C 1.35486 * 119.75536 * 100.00135 * 3 2 1 5 5 C 1.42163 * 120.70821 * 179.97438 * 4 3 2 6 6 C 1.39499 * 128.32670 * 180.25508 * 5 4 3 7 7 C 1.37136 * 115.08886 * 180.20610 * 6 5 4 8 8 C 1.39791 * 124.83424 * 179.85118 * 7 6 5 9 9 H 1.08004 * 119.99843 * 10.41244 * 8 7 6 10 10 C 1.40305 * 119.99991 * 190.41345 * 8 7 6 11 11 N 1.30675 * 120.00089 * 174.70244 * 10 8 7 12 12 Si 1.86798 * 120.00070 * 354.69934 * 10 8 7 13 13 H 1.48506 * 109.47137 * 179.97438 * 12 10 8 14 14 H 1.48502 * 109.47506 * 300.00177 * 12 10 8 15 15 H 1.48501 * 109.47092 * 60.00518 * 12 10 8 16 16 S 1.75452 * 110.33270 * 359.58200 * 7 6 5 17 17 C 1.40587 * 118.81695 * 0.02562 * 5 4 3 18 18 C 1.39193 * 119.92115 * 359.97438 * 17 5 4 19 19 C 1.39263 * 120.17510 * 0.02562 * 18 17 5 20 20 C 1.43198 * 120.05815 * 179.97438 * 19 18 17 21 21 N 3.55748 * 85.79799 * 287.38228 * 2 1 3 22 22 H 1.08997 * 109.46768 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46890 * 300.00082 * 1 2 3 24 24 H 1.09001 * 109.47049 * 59.99862 * 1 2 3 25 25 H 1.09004 * 109.47249 * 240.00569 * 2 1 3 26 26 H 1.08996 * 109.47424 * 119.99516 * 2 1 3 27 27 H 1.08005 * 119.64436 * 0.02562 * 4 3 2 28 28 H 1.08008 * 122.45633 * 0.02562 * 6 5 4 29 29 H 0.97005 * 120.00156 * 359.91170 * 11 10 8 30 30 H 1.08006 * 119.90988 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4490 1.9867 1.1584 5 6 2.9272 3.3253 1.1815 6 6 3.3956 4.0579 2.2724 7 6 3.7895 5.3399 1.9860 8 6 4.2872 6.2504 2.9227 9 1 4.5424 5.9164 3.9176 10 6 4.4551 7.5981 2.5704 11 7 4.8212 8.4687 3.4734 12 14 4.1553 8.1477 0.8105 13 1 4.3985 9.6086 0.6999 14 1 5.0778 7.4216 -0.0989 15 1 2.7506 7.8503 0.4315 16 16 3.5871 5.6720 0.2751 17 6 2.9600 4.0541 -0.0202 18 6 2.5291 3.4614 -1.2037 19 6 2.0650 2.1484 -1.2004 20 6 1.6218 1.5412 -2.4192 21 7 1.2693 1.0599 -3.3859 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5137 0.8900 27 1 2.4184 1.4144 2.0738 28 1 3.4417 3.6466 3.2700 29 1 4.9757 8.1836 4.3876 30 1 2.5540 4.0216 -2.1268 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229331.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:52 Heat of formation + Delta-G solvation = 26.575709 kcal Electronic energy + Delta-G solvation = -15556.089290 eV Core-core repulsion = 13019.848283 eV Total energy + Delta-G solvation = -2536.241007 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.04651 -36.29828 -35.22591 -34.19485 -32.56841 -29.99184 -29.03583 -25.99062 -23.91254 -21.96818 -21.36877 -19.27741 -19.20307 -18.06100 -15.89525 -15.57870 -14.92248 -14.51955 -13.86523 -13.67719 -13.48231 -13.26133 -12.91756 -12.73946 -12.71621 -12.36808 -12.13326 -11.95630 -11.81681 -11.44953 -11.02410 -10.89576 -10.63988 -10.42099 -10.26931 -10.03519 -9.76578 -8.98604 -8.73511 -8.03784 -7.76540 -6.81016 -4.99826 1.31885 2.05585 2.23643 2.67588 2.82963 2.93185 3.06508 3.20463 3.43511 3.61502 3.77249 4.41478 4.64532 4.72812 5.13606 5.19407 5.49779 5.57799 5.79620 5.98764 5.99913 6.10746 6.28727 6.35943 6.47093 6.62036 6.73996 6.79074 6.94235 7.02681 7.10854 7.29798 7.52558 7.65049 7.81885 8.01025 8.09398 9.31891 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.037373 B = 0.006041 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.031138 B = 4633.668216 C = 5260.418882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.016 4.016 4 C -0.158 4.158 5 C 0.060 3.940 6 C -0.358 4.358 7 C 0.067 3.933 8 C -0.408 4.408 9 H 0.102 0.898 10 C 0.047 3.953 11 N -0.768 5.768 12 Si 0.915 3.085 13 H -0.222 1.222 14 H -0.198 1.198 15 H -0.195 1.195 16 S -0.025 6.025 17 C -0.239 4.239 18 C 0.015 3.985 19 C -0.136 4.136 20 C 0.284 3.716 21 N -0.477 5.477 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.297 0.703 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 -3.836 -1.622 4.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.020 4.020 4 C -0.178 4.178 5 C 0.052 3.948 6 C -0.382 4.382 7 C -0.051 4.051 8 C -0.442 4.442 9 H 0.120 0.880 10 C -0.180 4.180 11 N -0.387 5.387 12 Si 0.736 3.264 13 H -0.145 1.145 14 H -0.124 1.124 15 H -0.120 1.120 16 S 0.230 5.770 17 C -0.350 4.350 18 C -0.010 4.010 19 C -0.143 4.143 20 C -0.028 4.028 21 N -0.154 5.154 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.109 0.891 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.285 -2.011 -4.833 5.712 hybrid contribution 0.000 -2.239 2.541 3.387 sum -2.285 -4.250 -2.292 5.342 Atomic orbital electron populations 1.21717 0.95011 1.01136 1.02275 1.20552 0.96103 0.93351 1.02310 1.18904 0.96802 0.94554 0.91714 1.20226 1.06469 0.94325 0.96766 1.18130 0.92194 0.92612 0.91822 1.19607 1.24588 0.95732 0.98226 1.21364 0.94900 0.96200 0.92667 1.20642 1.30267 0.93743 0.99537 0.88010 1.27550 0.90960 0.92324 1.07164 1.70502 1.25000 1.37952 1.05290 0.84590 0.85089 0.83550 0.73152 1.14465 1.12402 1.11973 1.84644 1.72206 1.13096 1.07068 1.22470 1.16129 0.99746 0.96671 1.20131 0.93175 0.92000 0.95723 1.15187 1.16946 0.95006 0.87122 1.25790 0.91981 0.92489 0.92492 1.81133 1.12964 1.09832 1.11488 0.92877 0.92234 0.92894 0.91725 0.90945 0.86811 0.86639 0.89078 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.84 37.16 0.37 -1.51 16 2 C -0.09 -1.20 5.53 -27.88 -0.15 -1.36 16 3 C -0.02 -0.27 5.11 -104.79 -0.54 -0.80 16 4 C -0.16 -2.88 9.61 -39.06 -0.38 -3.25 16 5 C 0.06 1.26 5.85 -107.04 -0.63 0.63 16 6 C -0.36 -7.93 10.13 -39.51 -0.40 -8.33 16 7 C 0.07 1.52 5.95 -39.40 -0.23 1.28 16 8 C -0.41 -9.35 9.70 -38.22 -0.37 -9.72 16 9 H 0.10 2.35 8.06 -52.48 -0.42 1.92 16 10 C 0.05 1.04 5.52 -17.27 -0.10 0.94 16 11 N -0.77 -17.29 13.65 55.57 0.76 -16.53 16 12 Si 0.91 17.19 24.49 -169.99 -4.16 13.02 16 13 H -0.22 -3.95 7.11 56.52 0.40 -3.55 16 14 H -0.20 -3.55 6.31 60.16 0.38 -3.17 16 15 H -0.19 -3.55 6.34 59.32 0.38 -3.17 16 16 S -0.02 -0.52 15.30 -107.50 -1.64 -2.16 16 17 C -0.24 -4.94 6.46 -38.34 -0.25 -5.18 16 18 C 0.01 0.28 9.77 -38.85 -0.38 -0.10 16 19 C -0.14 -2.44 5.74 -106.78 -0.61 -3.05 16 20 C 0.28 5.06 13.17 -22.48 -0.30 4.77 16 21 N -0.48 -8.92 18.54 41.84 0.78 -8.14 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 24 H 0.05 0.75 7.37 -51.93 -0.38 0.37 16 25 H 0.06 0.92 7.46 -51.93 -0.39 0.53 16 26 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 27 H 0.11 1.85 7.98 -52.48 -0.42 1.43 16 28 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 29 H 0.30 6.38 8.72 -40.82 -0.36 6.02 16 30 H 0.11 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -23.49 274.07 -7.02 -30.51 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -2.91 Total: 4.86 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -3.96 Total: -25.69 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 1.53 Total: -24.67 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -4.16 Total: 13.02 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -1.64 Total: -2.16 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -23.49 -7.02 -30.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229331.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.085 kcal (2) G-P(sol) polarization free energy of solvation -23.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds