Wall clock time and date at job start Mon Mar 30 2020 06:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46999 * 2 1 4 4 C 1.35486 * 119.75536 * 100.00135 * 3 2 1 5 5 C 1.42163 * 120.70821 * 179.97438 * 4 3 2 6 6 C 1.39499 * 128.32670 * 180.25508 * 5 4 3 7 7 C 1.37136 * 115.08886 * 180.20610 * 6 5 4 8 8 C 1.39791 * 124.83424 * 179.85118 * 7 6 5 9 9 H 1.08004 * 119.99843 * 10.41244 * 8 7 6 10 10 C 1.40305 * 119.99991 * 190.41345 * 8 7 6 11 11 N 1.30675 * 120.00089 * 174.70244 * 10 8 7 12 12 Si 1.86798 * 120.00070 * 354.69934 * 10 8 7 13 13 H 1.48506 * 109.47137 * 179.97438 * 12 10 8 14 14 H 1.48502 * 109.47506 * 300.00177 * 12 10 8 15 15 H 1.48501 * 109.47092 * 60.00518 * 12 10 8 16 16 S 1.75452 * 110.33270 * 359.58200 * 7 6 5 17 17 C 1.40587 * 118.81695 * 0.02562 * 5 4 3 18 18 C 1.39193 * 119.92115 * 359.97438 * 17 5 4 19 19 C 1.39263 * 120.17510 * 0.02562 * 18 17 5 20 20 C 1.43198 * 120.05815 * 179.97438 * 19 18 17 21 21 N 3.55748 * 85.79799 * 287.38228 * 2 1 3 22 22 H 1.08997 * 109.46768 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46890 * 300.00082 * 1 2 3 24 24 H 1.09001 * 109.47049 * 59.99862 * 1 2 3 25 25 H 1.09004 * 109.47249 * 240.00569 * 2 1 3 26 26 H 1.08996 * 109.47424 * 119.99516 * 2 1 3 27 27 H 1.08005 * 119.64436 * 0.02562 * 4 3 2 28 28 H 1.08008 * 122.45633 * 0.02562 * 6 5 4 29 29 H 0.97005 * 120.00156 * 359.91170 * 11 10 8 30 30 H 1.08006 * 119.90988 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4490 1.9867 1.1584 5 6 2.9272 3.3253 1.1815 6 6 3.3956 4.0579 2.2724 7 6 3.7895 5.3399 1.9860 8 6 4.2872 6.2504 2.9227 9 1 4.5424 5.9164 3.9176 10 6 4.4551 7.5981 2.5704 11 7 4.8212 8.4687 3.4734 12 14 4.1553 8.1477 0.8105 13 1 4.3985 9.6086 0.6999 14 1 5.0778 7.4216 -0.0989 15 1 2.7506 7.8503 0.4315 16 16 3.5871 5.6720 0.2751 17 6 2.9600 4.0541 -0.0202 18 6 2.5291 3.4614 -1.2037 19 6 2.0650 2.1484 -1.2004 20 6 1.6218 1.5412 -2.4192 21 7 1.2693 1.0599 -3.3859 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5137 0.8900 27 1 2.4184 1.4144 2.0738 28 1 3.4417 3.6466 3.2700 29 1 4.9757 8.1836 4.3876 30 1 2.5540 4.0216 -2.1268 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229331.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:51 Heat of formation + Delta-G solvation = 16.808978 kcal Electronic energy + Delta-G solvation = -15556.512807 eV Core-core repulsion = 13019.848283 eV Total energy + Delta-G solvation = -2536.664524 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54951 -37.84055 -36.78265 -35.66288 -34.00929 -31.55387 -30.41312 -27.59709 -25.21884 -23.52767 -22.77399 -20.88400 -20.77421 -19.58892 -17.49153 -17.08428 -16.35661 -15.93758 -15.35717 -15.17439 -14.83913 -14.70433 -14.37311 -14.26166 -14.17598 -13.76739 -13.58435 -13.45313 -13.18081 -12.84412 -12.48552 -12.27121 -11.99320 -11.83822 -11.73779 -11.60354 -11.33893 -10.53805 -10.23655 -9.72123 -9.37610 -8.38805 -6.71296 -0.24513 0.56327 0.69269 1.09579 1.15678 1.40436 1.55849 1.73427 1.91952 2.12033 2.23631 2.80063 3.14409 3.15533 3.86951 3.91863 4.24402 4.49062 4.59736 4.60463 4.64677 4.96780 5.00361 5.06120 5.09504 5.12651 5.24043 5.28100 5.35902 5.39324 5.58664 5.74271 5.87374 6.05127 6.19531 6.36740 6.61961 7.65142 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.037373 B = 0.006041 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.031138 B = 4633.668216 C = 5260.418882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.012 4.012 4 C -0.154 4.154 5 C 0.041 3.959 6 C -0.375 4.375 7 C 0.050 3.950 8 C -0.445 4.445 9 H 0.081 0.919 10 C 0.025 3.975 11 N -0.793 5.793 12 Si 0.930 3.070 13 H -0.204 1.204 14 H -0.185 1.185 15 H -0.186 1.186 16 S -0.005 6.005 17 C -0.254 4.254 18 C 0.012 3.988 19 C -0.121 4.121 20 C 0.297 3.703 21 N -0.482 5.482 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.135 0.865 28 H 0.112 0.888 29 H 0.292 0.708 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 -5.636 -3.607 7.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.016 4.016 4 C -0.174 4.174 5 C 0.033 3.967 6 C -0.399 4.399 7 C -0.068 4.068 8 C -0.479 4.479 9 H 0.099 0.901 10 C -0.198 4.198 11 N -0.413 5.413 12 Si 0.747 3.253 13 H -0.126 1.126 14 H -0.110 1.110 15 H -0.110 1.110 16 S 0.250 5.750 17 C -0.365 4.365 18 C -0.013 4.013 19 C -0.127 4.127 20 C -0.016 4.016 21 N -0.160 5.160 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.153 0.847 28 H 0.130 0.870 29 H 0.104 0.896 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.354 -3.813 -6.805 8.491 hybrid contribution 0.203 -2.012 2.994 3.613 sum -3.152 -5.826 -3.811 7.642 Atomic orbital electron populations 1.21706 0.94062 1.02511 1.01644 1.20635 0.96778 0.91216 1.03575 1.19254 0.95495 0.96060 0.90780 1.20474 1.05401 0.93321 0.98178 1.18351 0.92828 0.93932 0.91540 1.19776 1.25251 0.96087 0.98737 1.21497 0.95009 0.96438 0.93869 1.20559 1.33344 0.94749 0.99234 0.90087 1.28427 0.90052 0.92031 1.09261 1.70548 1.27263 1.38110 1.05384 0.84482 0.85749 0.84612 0.70505 1.12619 1.11038 1.11039 1.84444 1.71932 1.13268 1.05357 1.22732 1.16529 0.99936 0.97345 1.20363 0.92654 0.92408 0.95908 1.15371 1.15098 0.94722 0.87520 1.25597 0.91682 0.92145 0.92147 1.81167 1.12892 1.10173 1.11750 0.90619 0.91980 0.94390 0.91529 0.88705 0.84745 0.86987 0.89609 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.84 71.98 0.71 -2.45 16 2 C -0.08 -2.03 5.53 29.85 0.17 -1.87 16 3 C -0.01 -0.36 5.11 -19.97 -0.10 -0.46 16 4 C -0.15 -5.21 9.61 22.61 0.22 -4.99 16 5 C 0.04 1.68 5.85 -21.43 -0.13 1.56 16 6 C -0.37 -16.78 10.13 22.31 0.23 -16.55 16 7 C 0.05 2.31 5.95 22.39 0.13 2.44 16 8 C -0.44 -21.41 9.70 23.15 0.22 -21.18 16 9 H 0.08 4.05 8.06 -2.91 -0.02 4.03 16 10 C 0.02 1.12 5.52 85.37 0.47 1.59 16 11 N -0.79 -37.11 13.65 21.89 0.30 -36.81 16 12 Si 0.93 34.13 24.49 68.60 1.68 35.81 16 13 H -0.20 -6.91 7.11 99.48 0.71 -6.20 16 14 H -0.18 -6.35 6.31 97.16 0.61 -5.73 16 15 H -0.19 -6.51 6.34 97.70 0.62 -5.89 16 16 S -0.01 -0.20 15.30 -56.49 -0.86 -1.07 16 17 C -0.25 -10.06 6.46 23.07 0.15 -9.91 16 18 C 0.01 0.40 9.77 22.75 0.22 0.62 16 19 C -0.12 -3.92 5.74 -21.26 -0.12 -4.05 16 20 C 0.30 9.53 13.17 88.33 1.16 10.70 16 21 N -0.48 -16.48 18.54 19.00 0.35 -16.13 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.04 0.95 7.37 -2.39 -0.02 0.93 16 25 H 0.07 1.61 7.46 -2.38 -0.02 1.59 16 26 H 0.09 1.90 7.95 -2.39 -0.02 1.88 16 27 H 0.13 3.96 7.98 -2.91 -0.02 3.94 16 28 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 29 H 0.29 13.34 8.72 -92.70 -0.81 12.53 16 30 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -49.85 274.07 5.74 -44.11 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.94 Total: 18.64 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 3.33 Total: -44.56 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.65 Total: -52.93 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 1.68 Total: 35.81 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -0.86 Total: -1.07 kcal Total: -49.85 5.74 -44.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229331.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.921 kcal (2) G-P(sol) polarization free energy of solvation -49.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds