Wall clock time and date at job start Mon Mar 30 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47549 * 2 1 4 4 C 1.38348 * 119.86587 * 265.00664 * 3 2 1 5 5 C 1.37726 * 121.09716 * 180.02562 * 4 3 2 6 6 C 1.39491 * 121.34608 * 359.97438 * 5 4 3 7 7 S 1.76019 * 130.27895 * 179.97438 * 6 5 4 8 8 C 1.75481 * 91.74735 * 179.97438 * 7 6 5 9 9 C 1.39741 * 124.87838 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00387 * 173.24900 * 9 8 7 11 11 C 1.40335 * 119.99846 * 353.25578 * 9 8 7 12 12 N 1.30663 * 119.99938 * 6.56013 * 11 9 8 13 13 Si 1.86797 * 119.99906 * 186.56879 * 11 9 8 14 14 H 1.48506 * 109.47547 * 94.98315 * 13 11 9 15 15 H 1.48502 * 109.47167 * 214.98451 * 13 11 9 16 16 H 1.48504 * 109.47291 * 334.98180 * 13 11 9 17 17 C 1.37270 * 110.24426 * 0.02562 * 8 7 6 18 18 C 1.39091 * 115.06626 * 0.02562 * 17 8 7 19 19 C 1.38813 * 119.85901 * 85.02144 * 3 2 1 20 20 C 1.43198 * 120.32506 * 0.02562 * 19 3 2 21 21 N 3.55344 * 90.42844 * 74.19468 * 2 1 3 22 22 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46509 * 299.99643 * 1 2 3 24 24 H 1.08995 * 109.47248 * 59.99672 * 1 2 3 25 25 H 1.09007 * 109.46951 * 240.00164 * 2 1 3 26 26 H 1.09000 * 109.46953 * 120.00700 * 2 1 3 27 27 H 1.08001 * 119.44945 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.32580 * 179.97438 * 5 4 3 29 29 H 0.97000 * 119.99536 * 180.02562 * 12 11 9 30 30 H 1.08007 * 122.46712 * 179.72987 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3606 2.0354 -1.1952 5 6 2.8226 3.3326 -1.2246 6 6 2.9766 4.0748 -0.0536 7 16 3.5399 5.7257 0.1815 8 6 3.3344 5.6053 1.9200 9 6 3.6114 6.6288 2.8302 10 1 3.3543 6.5091 3.8722 11 6 4.2237 7.8124 2.3901 12 7 4.4183 8.0117 1.1135 13 14 4.7608 9.1027 3.6294 14 1 6.1943 8.9033 3.9621 15 1 4.5712 10.4562 3.0486 16 1 3.9439 8.9747 4.8630 17 6 2.8623 4.3613 2.2575 18 6 2.6576 3.4981 1.1862 19 6 2.1644 2.1071 1.1993 20 6 1.8258 1.4716 2.4371 21 7 1.5566 0.9678 3.4190 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.2527 1.4890 -2.1205 28 1 3.0707 3.7843 -2.1738 29 1 4.8418 8.8297 0.8094 30 1 2.6687 4.0724 3.2800 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229388.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:31 Heat of formation + Delta-G solvation = 29.029520 kcal Electronic energy + Delta-G solvation = -15562.453834 eV Core-core repulsion = 13026.319233 eV Total energy + Delta-G solvation = -2536.134602 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.60398 -35.71331 -35.31638 -34.19979 -32.23591 -29.67217 -28.76247 -25.83808 -23.69915 -22.39444 -21.39661 -18.85310 -18.71807 -17.29401 -15.67106 -15.28173 -14.93094 -14.35399 -13.72641 -13.53476 -13.42769 -12.87652 -12.69389 -12.37672 -12.18410 -12.00588 -11.97423 -11.73276 -11.63441 -11.54413 -11.00007 -10.81005 -10.68289 -10.40409 -10.29579 -10.02360 -9.48180 -9.25561 -8.41261 -7.54808 -7.43034 -6.56281 -4.89739 1.47848 2.10361 2.69264 2.73839 2.80767 3.07474 3.39977 3.41400 3.48701 3.69264 3.80957 4.46688 4.90200 4.92576 5.19613 5.28728 5.65081 5.76405 5.84312 6.00431 6.09940 6.15446 6.39777 6.43195 6.44003 6.65900 6.82304 7.00751 7.15860 7.29201 7.31577 7.49215 7.66378 7.81692 8.05061 8.16557 8.37386 9.38826 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.005881 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.574511 B = 4759.556028 C = 5477.854847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.001 4.001 4 C -0.213 4.213 5 C -0.011 4.011 6 C -0.279 4.279 7 S 0.143 5.857 8 C 0.059 3.941 9 C -0.361 4.361 10 H 0.104 0.896 11 C 0.051 3.949 12 N -0.759 5.759 13 Si 0.941 3.059 14 H -0.261 1.261 15 H -0.268 1.268 16 H -0.254 1.254 17 C -0.361 4.361 18 C 0.070 3.930 19 C -0.109 4.109 20 C 0.289 3.711 21 N -0.480 5.480 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.306 0.694 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -1.320 -4.786 4.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.006 4.006 4 C -0.234 4.234 5 C -0.034 4.034 6 C -0.393 4.393 7 S 0.403 5.597 8 C -0.061 4.061 9 C -0.395 4.395 10 H 0.122 0.878 11 C -0.173 4.173 12 N -0.384 5.384 13 Si 0.763 3.237 14 H -0.185 1.185 15 H -0.193 1.193 16 H -0.177 1.177 17 C -0.385 4.385 18 C 0.060 3.940 19 C -0.115 4.115 20 C -0.023 4.023 21 N -0.158 5.158 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.130 0.870 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.239 -0.813 -4.367 4.449 hybrid contribution -0.092 -0.328 1.053 1.107 sum -0.331 -1.141 -3.314 3.521 Atomic orbital electron populations 1.21708 0.94935 1.01085 1.02333 1.20568 0.96150 0.93488 1.02259 1.19281 0.95374 0.94141 0.91779 1.20058 1.11393 0.95864 0.96039 1.20253 0.94670 0.92992 0.95483 1.23525 1.15630 1.04221 0.95922 1.84817 1.69208 1.03145 1.02539 1.21524 0.93781 0.95200 0.95594 1.19538 1.26762 0.96283 0.96884 0.87788 1.26455 0.93925 1.00113 0.96794 1.68643 1.27917 1.26391 1.15410 0.85682 0.80157 0.77809 0.80005 1.18545 1.19275 1.17714 1.19531 1.26726 0.94851 0.97439 1.18612 0.92688 0.90194 0.92531 1.16517 1.15448 0.93648 0.85904 1.25737 0.91955 0.91961 0.92632 1.81073 1.12869 1.10831 1.11028 0.92904 0.92794 0.92264 0.90935 0.91786 0.87045 0.87522 0.88072 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.90 37.16 0.37 -1.60 16 2 C -0.09 -1.30 5.56 -27.88 -0.16 -1.46 16 3 C 0.00 -0.01 5.15 -104.37 -0.54 -0.55 16 4 C -0.21 -3.69 9.60 -39.73 -0.38 -4.07 16 5 C -0.01 -0.21 10.00 -39.30 -0.39 -0.60 16 6 C -0.28 -6.18 6.47 -38.30 -0.25 -6.43 16 7 S 0.14 3.24 20.17 -107.50 -2.17 1.08 16 8 C 0.06 1.46 6.11 -39.37 -0.24 1.21 16 9 C -0.36 -8.38 9.26 -38.23 -0.35 -8.74 16 10 H 0.10 2.30 7.86 -52.49 -0.41 1.89 16 11 C 0.05 1.08 5.49 -17.26 -0.09 0.98 16 12 N -0.76 -16.27 10.63 55.57 0.59 -15.68 16 13 Si 0.94 15.70 29.57 -169.99 -5.03 10.67 16 14 H -0.26 -4.33 7.11 56.52 0.40 -3.93 16 15 H -0.27 -4.33 7.11 56.52 0.40 -3.92 16 16 H -0.25 -4.23 7.11 56.52 0.40 -3.83 16 17 C -0.36 -8.93 9.78 -39.62 -0.39 -9.32 16 18 C 0.07 1.64 6.00 -104.95 -0.63 1.01 16 19 C -0.11 -2.32 5.95 -103.94 -0.62 -2.94 16 20 C 0.29 6.22 13.36 -22.47 -0.30 5.92 16 21 N -0.48 -10.62 18.54 41.84 0.78 -9.85 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.83 7.91 -51.93 -0.41 0.42 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.91 8.05 -51.92 -0.42 0.49 16 26 H 0.06 1.00 7.26 -51.93 -0.38 0.62 16 27 H 0.11 1.59 8.05 -52.49 -0.42 1.16 16 28 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.31 5.78 8.29 -40.82 -0.34 5.44 16 30 H 0.11 2.68 8.02 -52.48 -0.42 2.25 16 LS Contribution 282.64 15.07 4.26 4.26 Total: -1.00 -25.25 282.64 -8.41 -33.65 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -2.86 Total: 2.45 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -3.97 Total: -26.58 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 1.37 Total: -25.53 kcal Atomic # 14 Polarization: 15.70 SS G_CDS: -5.03 Total: 10.67 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.17 Total: 1.08 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -25.25 -8.41 -33.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229388.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.683 kcal (2) G-P(sol) polarization free energy of solvation -25.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds