Wall clock time and date at job start Mon Mar 30 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47549 * 2 1 4 4 C 1.38348 * 119.86587 * 265.00664 * 3 2 1 5 5 C 1.37726 * 121.09716 * 180.02562 * 4 3 2 6 6 C 1.39491 * 121.34608 * 359.97438 * 5 4 3 7 7 S 1.76019 * 130.27895 * 179.97438 * 6 5 4 8 8 C 1.75481 * 91.74735 * 179.97438 * 7 6 5 9 9 C 1.39741 * 124.87838 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00387 * 173.24900 * 9 8 7 11 11 C 1.40335 * 119.99846 * 353.25578 * 9 8 7 12 12 N 1.30663 * 119.99938 * 6.56013 * 11 9 8 13 13 Si 1.86797 * 119.99906 * 186.56879 * 11 9 8 14 14 H 1.48506 * 109.47547 * 94.98315 * 13 11 9 15 15 H 1.48502 * 109.47167 * 214.98451 * 13 11 9 16 16 H 1.48504 * 109.47291 * 334.98180 * 13 11 9 17 17 C 1.37270 * 110.24426 * 0.02562 * 8 7 6 18 18 C 1.39091 * 115.06626 * 0.02562 * 17 8 7 19 19 C 1.38813 * 119.85901 * 85.02144 * 3 2 1 20 20 C 1.43198 * 120.32506 * 0.02562 * 19 3 2 21 21 N 3.55344 * 90.42844 * 74.19468 * 2 1 3 22 22 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46509 * 299.99643 * 1 2 3 24 24 H 1.08995 * 109.47248 * 59.99672 * 1 2 3 25 25 H 1.09007 * 109.46951 * 240.00164 * 2 1 3 26 26 H 1.09000 * 109.46953 * 120.00700 * 2 1 3 27 27 H 1.08001 * 119.44945 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.32580 * 179.97438 * 5 4 3 29 29 H 0.97000 * 119.99536 * 180.02562 * 12 11 9 30 30 H 1.08007 * 122.46712 * 179.72987 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3606 2.0354 -1.1952 5 6 2.8226 3.3326 -1.2246 6 6 2.9766 4.0748 -0.0536 7 16 3.5399 5.7257 0.1815 8 6 3.3344 5.6053 1.9200 9 6 3.6114 6.6288 2.8302 10 1 3.3543 6.5091 3.8722 11 6 4.2237 7.8124 2.3901 12 7 4.4183 8.0117 1.1135 13 14 4.7608 9.1027 3.6294 14 1 6.1943 8.9033 3.9621 15 1 4.5712 10.4562 3.0486 16 1 3.9439 8.9747 4.8630 17 6 2.8623 4.3613 2.2575 18 6 2.6576 3.4981 1.1862 19 6 2.1644 2.1071 1.1993 20 6 1.8258 1.4716 2.4371 21 7 1.5566 0.9678 3.4190 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.2527 1.4890 -2.1205 28 1 3.0707 3.7843 -2.1738 29 1 4.8418 8.8297 0.8094 30 1 2.6687 4.0724 3.2800 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229388.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:31 Heat of formation + Delta-G solvation = 18.403559 kcal Electronic energy + Delta-G solvation = -15562.914611 eV Core-core repulsion = 13026.319233 eV Total energy + Delta-G solvation = -2536.595378 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.18237 -37.40888 -36.97657 -35.73376 -33.70549 -31.27511 -30.27452 -27.47321 -25.08804 -24.03435 -22.88021 -20.47589 -20.37326 -18.95171 -17.23830 -16.83636 -16.47432 -15.80671 -15.29510 -15.02650 -14.88937 -14.29260 -14.13415 -14.01804 -13.86883 -13.65662 -13.36084 -13.33226 -13.20598 -12.96313 -12.40308 -12.15689 -12.02580 -11.88783 -11.71561 -11.60432 -11.05452 -10.99492 -10.05109 -9.22375 -9.03367 -8.27873 -6.65535 -0.14393 0.51534 1.28542 1.33619 1.37111 1.52699 1.71429 1.81994 1.90861 2.10717 2.12957 2.79499 3.22963 3.28436 3.85074 4.06301 4.40914 4.49695 4.57416 4.62870 4.75796 4.79850 5.00488 5.07675 5.09389 5.23554 5.36187 5.37991 5.43661 5.69918 5.71631 5.81829 5.97058 6.19516 6.32936 6.44213 6.66378 7.82911 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.005881 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.574511 B = 4759.556028 C = 5477.854847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C 0.008 3.992 4 C -0.193 4.193 5 C -0.010 4.010 6 C -0.299 4.299 7 S 0.143 5.857 8 C 0.030 3.970 9 C -0.392 4.392 10 H 0.100 0.900 11 C 0.021 3.979 12 N -0.778 5.778 13 Si 1.012 2.988 14 H -0.256 1.256 15 H -0.252 1.252 16 H -0.257 1.257 17 C -0.397 4.397 18 C 0.047 3.953 19 C -0.132 4.132 20 C 0.295 3.705 21 N -0.500 5.500 22 H 0.077 0.923 23 H 0.026 0.974 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.053 0.947 27 H 0.160 0.840 28 H 0.138 0.862 29 H 0.319 0.681 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 -1.897 -7.049 7.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C 0.003 3.997 4 C -0.213 4.213 5 C -0.033 4.033 6 C -0.414 4.414 7 S 0.402 5.598 8 C -0.090 4.090 9 C -0.425 4.425 10 H 0.118 0.882 11 C -0.201 4.201 12 N -0.402 5.402 13 Si 0.829 3.171 14 H -0.180 1.180 15 H -0.176 1.176 16 H -0.181 1.181 17 C -0.422 4.422 18 C 0.037 3.963 19 C -0.138 4.138 20 C -0.016 4.016 21 N -0.178 5.178 22 H 0.096 0.904 23 H 0.045 0.955 24 H 0.091 0.909 25 H 0.128 0.872 26 H 0.072 0.928 27 H 0.178 0.822 28 H 0.156 0.844 29 H 0.133 0.867 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.155 -1.412 -6.651 6.801 hybrid contribution -0.167 -0.293 1.621 1.655 sum -0.322 -1.704 -5.030 5.321 Atomic orbital electron populations 1.21702 0.93891 1.02571 1.01655 1.20679 0.96907 0.91170 1.03591 1.19798 0.93345 0.95644 0.90863 1.20623 1.08203 0.95125 0.97372 1.20719 0.93522 0.93511 0.95522 1.23740 1.16761 1.04158 0.96704 1.84444 1.69784 1.04260 1.01270 1.21818 0.94505 0.95560 0.97078 1.19815 1.28309 0.97564 0.96830 0.88192 1.27307 0.93062 1.01096 0.98651 1.68637 1.27525 1.27423 1.16662 0.84689 0.79553 0.75506 0.77312 1.18043 1.17598 1.18053 1.19522 1.29600 0.96090 0.96981 1.18808 0.93487 0.91205 0.92786 1.16788 1.16739 0.93275 0.86978 1.25924 0.91459 0.91547 0.92676 1.81047 1.13783 1.11689 1.11288 0.90420 0.95465 0.90946 0.87224 0.92839 0.82246 0.84425 0.86708 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.90 71.98 0.71 -2.70 16 2 C -0.09 -2.27 5.56 29.85 0.17 -2.10 16 3 C 0.01 0.28 5.15 -19.70 -0.10 0.18 16 4 C -0.19 -5.85 9.60 22.17 0.21 -5.63 16 5 C -0.01 -0.35 10.00 22.45 0.22 -0.13 16 6 C -0.30 -13.28 6.47 23.10 0.15 -13.13 16 7 S 0.14 6.63 20.17 -56.49 -1.14 5.49 16 8 C 0.03 1.58 6.11 22.41 0.14 1.71 16 9 C -0.39 -19.15 9.26 23.14 0.21 -18.93 16 10 H 0.10 4.74 7.86 -2.91 -0.02 4.72 16 11 C 0.02 0.89 5.49 85.38 0.47 1.36 16 12 N -0.78 -33.52 10.63 21.90 0.23 -33.29 16 13 Si 1.01 31.86 29.57 68.60 2.03 33.89 16 14 H -0.26 -7.85 7.11 99.48 0.71 -7.14 16 15 H -0.25 -7.27 7.11 99.48 0.71 -6.56 16 16 H -0.26 -8.14 7.11 99.48 0.71 -7.44 16 17 C -0.40 -21.03 9.78 22.25 0.22 -20.81 16 18 C 0.05 2.27 6.00 -20.08 -0.12 2.15 16 19 C -0.13 -5.63 5.95 -19.43 -0.12 -5.74 16 20 C 0.29 13.02 13.36 88.33 1.18 14.20 16 21 N -0.50 -22.70 18.54 19.00 0.35 -22.35 16 22 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.03 0.79 7.91 -2.39 -0.02 0.77 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.11 2.13 8.05 -2.38 -0.02 2.11 16 26 H 0.05 1.55 7.26 -2.39 -0.02 1.53 16 27 H 0.16 3.41 8.05 -2.91 -0.02 3.38 16 28 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 29 H 0.32 11.85 8.29 -92.71 -0.77 11.08 16 30 H 0.08 4.64 8.02 -2.91 -0.02 4.62 16 Total: -1.00 -57.78 282.64 5.98 -51.80 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.16 Total: 14.03 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 3.35 Total: -49.58 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.58 Total: -55.64 kcal Atomic # 14 Polarization: 31.86 SS G_CDS: 2.03 Total: 33.89 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -1.14 Total: 5.49 kcal Total: -57.78 5.98 -51.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229388.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.204 kcal (2) G-P(sol) polarization free energy of solvation -57.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds