Wall clock time and date at job start Mon Mar 30 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.46680 * 2 1 4 4 C 1.36024 * 119.75386 * 264.72998 * 3 2 1 5 5 C 1.39793 * 121.05219 * 179.72886 * 4 3 2 6 6 C 1.43197 * 119.48139 * 180.28715 * 5 4 3 7 7 N 5.92042 * 108.54193 * 321.90695 * 2 1 3 8 8 C 1.41135 * 121.03709 * 0.54768 * 5 4 3 9 9 S 1.76026 * 130.74167 * 179.73014 * 8 5 4 10 10 C 1.75525 * 91.48890 * 180.02562 * 9 8 5 11 11 C 1.32709 * 110.63039 * 0.02562 * 10 9 8 12 12 C 1.39507 * 119.88140 * 359.73804 * 8 5 4 13 13 C 1.40623 * 119.74491 * 85.00460 * 3 2 1 14 14 C 1.40174 * 120.26368 * 359.97115 * 13 3 2 15 15 H 1.07999 * 120.00162 * 320.37814 * 14 13 3 16 16 C 1.40287 * 119.99974 * 140.36599 * 14 13 3 17 17 N 1.30649 * 119.99891 * 339.83804 * 16 14 13 18 18 Si 1.86797 * 119.99720 * 159.83315 * 16 14 13 19 19 H 1.48506 * 109.47170 * 60.00303 * 18 16 14 20 20 H 1.48499 * 109.47219 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47390 * 300.00727 * 18 16 14 22 22 H 1.09005 * 109.46888 * 299.99428 * 1 2 3 23 23 H 1.08996 * 109.47343 * 59.99603 * 1 2 3 24 24 H 1.09005 * 109.46815 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47343 * 120.00397 * 2 1 3 26 26 H 1.08998 * 109.46676 * 240.00928 * 2 1 3 27 27 H 1.08001 * 119.47047 * 0.02562 * 4 3 2 28 28 H 1.08003 * 124.68201 * 179.97438 * 10 9 8 29 29 H 1.07999 * 122.09578 * 180.02562 * 11 10 9 30 30 H 0.97007 * 119.99355 * 180.47899 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3595 2.0212 -1.1759 5 6 2.8227 3.3398 -1.2080 6 6 3.1517 3.9408 -2.4654 7 7 3.4127 4.4176 -3.4629 8 6 2.9763 4.0862 -0.0200 9 16 3.5357 5.7354 0.2363 10 6 3.3227 5.5865 1.9722 11 6 2.8678 4.3799 2.2857 12 6 2.6583 3.5089 1.2095 13 6 2.1646 2.1141 1.2163 14 6 1.8308 1.4889 2.4257 15 1 0.9636 0.8476 2.4808 16 6 2.6235 1.6960 3.5645 17 7 3.8515 2.1234 3.4367 18 14 1.9231 1.3608 5.2634 19 1 1.5212 -0.0656 5.3606 20 1 2.9537 1.6562 6.2909 21 1 0.7372 2.2255 5.4895 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 2.2553 1.4719 -2.1000 28 1 3.5336 6.3686 2.6865 29 1 2.6702 4.0885 3.3067 30 1 4.4018 2.2599 4.2239 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229410.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:20 Heat of formation + Delta-G solvation = 48.683003 kcal Electronic energy + Delta-G solvation = -16163.119240 eV Core-core repulsion = 13627.836877 eV Total energy + Delta-G solvation = -2535.282363 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.62660 -35.77373 -35.04789 -34.10283 -32.08567 -29.77334 -27.95661 -26.00000 -23.22012 -22.23105 -21.76492 -18.65817 -18.12704 -17.50263 -15.93867 -15.20974 -14.91337 -14.07349 -13.67732 -13.42700 -13.23918 -12.91972 -12.60350 -12.32028 -12.09271 -11.86819 -11.69322 -11.60323 -11.45818 -11.27774 -11.12675 -10.90166 -10.44980 -10.27822 -10.06064 -9.85846 -9.56108 -9.30959 -8.27121 -7.42376 -7.38217 -6.74316 -4.84203 1.78114 2.08168 2.53388 2.77835 2.83178 2.85730 2.97086 3.34567 3.56709 3.63200 3.96564 4.38779 5.10110 5.12959 5.67738 5.78106 5.90112 6.00882 6.15999 6.31166 6.38370 6.50823 6.54625 6.65193 6.68466 6.82429 6.91868 7.03320 7.10795 7.45363 7.48233 7.53859 7.73486 7.95458 8.26562 8.36129 8.53000 9.61338 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.009866 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.267375 B = 2837.417566 C = 4117.690224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.056 4.056 3 C -0.205 4.205 4 C 0.006 3.994 5 C -0.168 4.168 6 C 0.283 3.717 7 N -0.498 5.498 8 C -0.038 4.038 9 S 0.015 5.985 10 C -0.272 4.272 11 C -0.032 4.032 12 C -0.140 4.140 13 C 0.189 3.811 14 C -0.426 4.426 15 H 0.101 0.899 16 C 0.076 3.924 17 N -0.742 5.742 18 Si 0.905 3.095 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.256 1.256 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.105 0.895 28 H 0.146 0.854 29 H 0.128 0.872 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 -2.110 3.885 5.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 C -0.209 4.209 4 C -0.016 4.016 5 C -0.180 4.180 6 C -0.027 4.027 7 N -0.177 5.177 8 C -0.157 4.157 9 S 0.276 5.724 10 C -0.405 4.405 11 C -0.061 4.061 12 C -0.148 4.148 13 C 0.183 3.817 14 C -0.452 4.452 15 H 0.118 0.882 16 C -0.150 4.150 17 N -0.363 5.363 18 Si 0.728 3.272 19 H -0.182 1.182 20 H -0.197 1.197 21 H -0.180 1.180 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.123 0.877 28 H 0.164 0.836 29 H 0.145 0.855 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.063 -0.080 1.626 2.628 hybrid contribution -0.560 -1.269 2.184 2.587 sum -2.623 -1.349 3.810 4.818 Atomic orbital electron populations 1.21774 0.96700 0.99958 1.01769 1.20114 0.94535 0.93472 1.01245 1.19093 1.13034 0.96325 0.92434 1.19969 0.93525 0.91158 0.96986 1.14502 1.24172 0.95609 0.83682 1.26034 0.91515 0.92391 0.92771 1.81061 1.14772 1.09927 1.11917 1.22245 1.01993 0.95264 0.96149 1.83731 1.72078 1.12447 1.04146 1.24660 1.16825 1.02319 0.96694 1.19736 0.95818 0.91067 0.99468 1.18948 1.11264 0.94866 0.89754 1.18310 0.83769 0.87536 0.92128 1.19717 1.09558 1.23013 0.92882 0.88167 1.26132 0.94163 0.92691 1.01993 1.69760 1.05821 1.26589 1.34104 0.86367 0.80336 0.80766 0.79775 1.18242 1.19749 1.18029 0.92433 0.93489 0.93978 0.91149 0.93236 0.87734 0.83608 0.85463 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.82 37.16 0.36 -1.83 16 2 C -0.06 -0.96 5.44 -27.88 -0.15 -1.11 16 3 C -0.21 -4.18 5.14 -104.52 -0.54 -4.72 16 4 C 0.01 0.13 9.19 -39.80 -0.37 -0.24 16 5 C -0.17 -3.67 5.78 -106.29 -0.61 -4.29 16 6 C 0.28 6.23 15.01 -22.47 -0.34 5.89 16 7 N -0.50 -11.26 18.54 41.84 0.78 -10.48 16 8 C -0.04 -0.87 6.33 -38.01 -0.24 -1.11 16 9 S 0.01 0.31 22.99 -107.50 -2.47 -2.16 16 10 C -0.27 -5.36 11.12 28.85 0.32 -5.04 16 11 C -0.03 -0.68 8.26 -40.80 -0.34 -1.02 16 12 C -0.14 -3.21 5.51 -104.77 -0.58 -3.78 16 13 C 0.19 4.19 5.50 -104.29 -0.57 3.61 16 14 C -0.43 -8.98 7.60 -38.09 -0.29 -9.27 16 15 H 0.10 1.98 6.44 -52.49 -0.34 1.64 16 16 C 0.08 1.54 3.84 -17.28 -0.07 1.47 16 17 N -0.74 -15.97 10.83 55.57 0.60 -15.37 16 18 Si 0.90 15.21 29.61 -169.99 -5.03 10.17 16 19 H -0.26 -4.30 7.11 56.52 0.40 -3.90 16 20 H -0.27 -4.55 7.11 56.52 0.40 -4.15 16 21 H -0.26 -4.33 7.11 56.52 0.40 -3.93 16 22 H 0.06 0.91 7.06 -51.93 -0.37 0.54 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.24 7.23 -51.93 -0.38 0.87 16 26 H 0.05 0.77 8.01 -51.93 -0.42 0.35 16 27 H 0.10 1.86 8.03 -52.49 -0.42 1.44 16 28 H 0.15 2.45 8.06 -52.48 -0.42 2.02 16 29 H 0.13 2.66 6.08 -52.49 -0.32 2.34 16 30 H 0.29 5.77 8.29 -40.82 -0.34 5.43 16 LS Contribution 277.28 15.07 4.18 4.18 Total: -1.00 -24.05 277.28 -7.99 -32.04 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.64 Total: 3.05 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -3.40 Total: -21.43 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 1.38 Total: -25.85 kcal Atomic # 14 Polarization: 15.21 SS G_CDS: -5.03 Total: 10.17 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.47 Total: -2.16 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -24.05 -7.99 -32.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229410.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.721 kcal (2) G-P(sol) polarization free energy of solvation -24.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds