Wall clock time and date at job start Mon Mar 30 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.46680 * 2 1 4 4 C 1.36024 * 119.75386 * 264.72998 * 3 2 1 5 5 C 1.39793 * 121.05219 * 179.72886 * 4 3 2 6 6 C 1.43197 * 119.48139 * 180.28715 * 5 4 3 7 7 N 5.92042 * 108.54193 * 321.90695 * 2 1 3 8 8 C 1.41135 * 121.03709 * 0.54768 * 5 4 3 9 9 S 1.76026 * 130.74167 * 179.73014 * 8 5 4 10 10 C 1.75525 * 91.48890 * 180.02562 * 9 8 5 11 11 C 1.32709 * 110.63039 * 0.02562 * 10 9 8 12 12 C 1.39507 * 119.88140 * 359.73804 * 8 5 4 13 13 C 1.40623 * 119.74491 * 85.00460 * 3 2 1 14 14 C 1.40174 * 120.26368 * 359.97115 * 13 3 2 15 15 H 1.07999 * 120.00162 * 320.37814 * 14 13 3 16 16 C 1.40287 * 119.99974 * 140.36599 * 14 13 3 17 17 N 1.30649 * 119.99891 * 339.83804 * 16 14 13 18 18 Si 1.86797 * 119.99720 * 159.83315 * 16 14 13 19 19 H 1.48506 * 109.47170 * 60.00303 * 18 16 14 20 20 H 1.48499 * 109.47219 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47390 * 300.00727 * 18 16 14 22 22 H 1.09005 * 109.46888 * 299.99428 * 1 2 3 23 23 H 1.08996 * 109.47343 * 59.99603 * 1 2 3 24 24 H 1.09005 * 109.46815 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47343 * 120.00397 * 2 1 3 26 26 H 1.08998 * 109.46676 * 240.00928 * 2 1 3 27 27 H 1.08001 * 119.47047 * 0.02562 * 4 3 2 28 28 H 1.08003 * 124.68201 * 179.97438 * 10 9 8 29 29 H 1.07999 * 122.09578 * 180.02562 * 11 10 9 30 30 H 0.97007 * 119.99355 * 180.47899 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3595 2.0212 -1.1759 5 6 2.8227 3.3398 -1.2080 6 6 3.1517 3.9408 -2.4654 7 7 3.4127 4.4176 -3.4629 8 6 2.9763 4.0862 -0.0200 9 16 3.5357 5.7354 0.2363 10 6 3.3227 5.5865 1.9722 11 6 2.8678 4.3799 2.2857 12 6 2.6583 3.5089 1.2095 13 6 2.1646 2.1141 1.2163 14 6 1.8308 1.4889 2.4257 15 1 0.9636 0.8476 2.4808 16 6 2.6235 1.6960 3.5645 17 7 3.8515 2.1234 3.4367 18 14 1.9231 1.3608 5.2634 19 1 1.5212 -0.0656 5.3606 20 1 2.9537 1.6562 6.2909 21 1 0.7372 2.2255 5.4895 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 2.2553 1.4719 -2.1000 28 1 3.5336 6.3686 2.6865 29 1 2.6702 4.0885 3.3067 30 1 4.4018 2.2599 4.2239 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229410.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:20 Heat of formation + Delta-G solvation = 39.728663 kcal Electronic energy + Delta-G solvation = -16163.507529 eV Core-core repulsion = 13627.836877 eV Total energy + Delta-G solvation = -2535.670652 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21880 -37.48614 -36.58578 -35.70400 -33.59005 -31.33394 -29.48070 -27.61943 -24.70723 -23.83168 -23.26697 -20.23652 -19.71860 -19.12868 -17.50752 -16.78229 -16.42647 -15.66068 -15.15449 -14.92151 -14.83090 -14.41004 -14.17629 -13.93045 -13.57774 -13.45108 -13.23712 -13.04932 -12.98358 -12.85059 -12.54786 -12.29881 -11.88331 -11.78815 -11.43543 -11.39361 -11.13087 -10.86955 -9.90450 -9.04316 -8.94375 -8.36356 -6.46442 0.17109 0.41491 0.90821 1.33998 1.42353 1.47610 1.55655 1.76405 1.90074 2.16305 2.32754 2.75826 3.44884 3.47580 4.20447 4.32620 4.55933 4.57260 4.78250 4.85635 4.86812 5.03123 5.10009 5.23251 5.25461 5.35455 5.42570 5.52782 5.66872 5.85765 5.86330 5.98123 6.14641 6.35237 6.66134 6.72710 6.84140 8.08824 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.009866 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.267375 B = 2837.417566 C = 4117.690224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 C -0.210 4.210 4 C 0.003 3.997 5 C -0.187 4.187 6 C 0.291 3.709 7 N -0.515 5.515 8 C -0.063 4.063 9 S 0.020 5.980 10 C -0.262 4.262 11 C -0.049 4.049 12 C -0.163 4.163 13 C 0.162 3.838 14 C -0.433 4.433 15 H 0.111 0.889 16 C 0.048 3.952 17 N -0.770 5.770 18 Si 0.968 3.032 19 H -0.252 1.252 20 H -0.270 1.270 21 H -0.256 1.256 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.127 0.873 28 H 0.176 0.824 29 H 0.129 0.871 30 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -2.875 4.932 6.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.091 4.091 3 C -0.214 4.214 4 C -0.020 4.020 5 C -0.199 4.199 6 C -0.018 4.018 7 N -0.195 5.195 8 C -0.181 4.181 9 S 0.281 5.719 10 C -0.394 4.394 11 C -0.078 4.078 12 C -0.171 4.171 13 C 0.156 3.844 14 C -0.459 4.459 15 H 0.128 0.872 16 C -0.176 4.176 17 N -0.391 5.391 18 Si 0.788 3.212 19 H -0.176 1.176 20 H -0.194 1.194 21 H -0.180 1.180 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.194 0.806 29 H 0.146 0.854 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.720 -0.849 2.657 3.896 hybrid contribution -0.335 -1.051 1.903 2.199 sum -3.055 -1.900 4.559 5.808 Atomic orbital electron populations 1.21710 0.95077 1.01488 1.01322 1.20147 0.95872 0.91445 1.01682 1.19487 1.12262 0.97731 0.91901 1.20213 0.93013 0.90753 0.97988 1.14694 1.25348 0.96472 0.83382 1.26088 0.91080 0.91999 0.92642 1.81051 1.15689 1.10417 1.12361 1.22509 1.02790 0.96318 0.96493 1.83624 1.71876 1.11533 1.04856 1.25010 1.15205 1.02496 0.96725 1.19803 0.97084 0.91636 0.99308 1.19271 1.11931 0.95605 0.90267 1.18700 0.84503 0.87822 0.93385 1.20010 1.09728 1.22971 0.93192 0.87179 1.26813 0.93981 0.91955 1.04854 1.69802 1.06946 1.26955 1.35404 0.85411 0.79463 0.80725 0.75561 1.17589 1.19416 1.18039 0.93528 0.93289 0.91439 0.91912 0.91532 0.85517 0.80619 0.85354 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.82 71.98 0.71 -3.21 16 2 C -0.05 -1.76 5.44 29.85 0.16 -1.60 16 3 C -0.21 -8.44 5.14 -19.80 -0.10 -8.54 16 4 C 0.00 0.11 9.19 22.13 0.20 0.31 16 5 C -0.19 -8.20 5.78 -20.95 -0.12 -8.32 16 6 C 0.29 12.81 15.01 88.33 1.33 14.13 16 7 N -0.52 -23.24 18.54 19.00 0.35 -22.89 16 8 C -0.06 -2.87 6.33 23.29 0.15 -2.72 16 9 S 0.02 0.82 22.99 -56.49 -1.30 -0.48 16 10 C -0.26 -10.05 11.12 66.65 0.74 -9.31 16 11 C -0.05 -2.10 8.26 21.53 0.18 -1.92 16 12 C -0.16 -7.46 5.51 -19.96 -0.11 -7.57 16 13 C 0.16 7.18 5.50 -19.65 -0.11 7.07 16 14 C -0.43 -18.00 7.60 23.24 0.18 -17.83 16 15 H 0.11 4.23 6.44 -2.91 -0.02 4.21 16 16 C 0.05 1.88 3.84 85.37 0.33 2.21 16 17 N -0.77 -32.74 10.83 21.89 0.24 -32.50 16 18 Si 0.97 29.88 29.61 68.60 2.03 31.91 16 19 H -0.25 -7.50 7.11 99.48 0.71 -6.80 16 20 H -0.27 -8.13 7.11 99.48 0.71 -7.43 16 21 H -0.26 -7.88 7.11 99.48 0.71 -7.18 16 22 H 0.05 1.40 7.06 -2.38 -0.02 1.38 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.06 2.13 7.23 -2.39 -0.02 2.11 16 26 H 0.07 1.92 8.01 -2.39 -0.02 1.90 16 27 H 0.13 4.35 8.03 -2.91 -0.02 4.32 16 28 H 0.18 5.52 8.06 -2.91 -0.02 5.49 16 29 H 0.13 5.32 6.08 -2.91 -0.02 5.30 16 30 H 0.30 11.59 8.29 -92.70 -0.77 10.82 16 Total: -1.00 -50.28 277.28 6.03 -44.25 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.18 Total: 17.01 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 3.53 Total: -37.30 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.59 Total: -55.39 kcal Atomic # 14 Polarization: 29.88 SS G_CDS: 2.03 Total: 31.91 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -1.30 Total: -0.48 kcal Total: -50.28 6.03 -44.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229410.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.979 kcal (2) G-P(sol) polarization free energy of solvation -50.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds