Wall clock time and date at job start Mon Mar 30 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46977 * 2 1 4 4 C 1.32731 * 124.65630 * 89.99970 * 3 2 1 5 5 C 1.39976 * 115.79523 * 180.02562 * 4 3 2 6 6 C 1.39790 * 112.77938 * 0.02562 * 5 4 3 7 7 C 1.39880 * 120.67358 * 180.02562 * 6 5 4 8 8 C 1.37353 * 122.46232 * 0.02562 * 7 6 5 9 9 C 1.39516 * 120.91382 * 359.95451 * 8 7 6 10 10 C 1.43200 * 120.44668 * 180.02562 * 9 8 7 11 11 N 8.63578 * 108.17395 * 21.81650 * 2 1 3 12 12 C 1.46257 * 119.10318 * 0.02562 * 9 8 7 13 13 C 1.39897 * 120.71647 * 180.02562 * 12 9 8 14 14 H 1.07997 * 119.99659 * 320.59634 * 13 12 9 15 15 C 1.40357 * 120.00067 * 140.60313 * 13 12 9 16 16 N 1.30621 * 119.99938 * 339.83230 * 15 13 12 17 17 Si 1.86799 * 120.00154 * 159.84035 * 15 13 12 18 18 H 1.48501 * 109.47055 * 89.99186 * 17 15 13 19 19 H 1.48495 * 109.47390 * 209.99702 * 17 15 13 20 20 H 1.48502 * 109.46749 * 329.99840 * 17 15 13 21 21 S 1.75482 * 124.66276 * 269.70334 * 3 2 1 22 22 H 1.09003 * 109.47015 * 299.99827 * 1 2 3 23 23 H 1.08992 * 109.47687 * 59.99859 * 1 2 3 24 24 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47545 * 119.99802 * 2 1 3 26 26 H 1.08998 * 109.46936 * 240.00666 * 2 1 3 27 27 H 1.07996 * 122.10445 * 359.97438 * 4 3 2 28 28 H 1.07997 * 118.77175 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.54342 * 179.97438 * 8 7 6 30 30 H 0.97009 * 120.00001 * 182.29874 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2839 2.1325 1.0918 5 6 2.7443 3.4366 0.8762 6 6 2.8554 3.7540 -0.4807 7 6 3.3017 5.0168 -0.8839 8 6 3.6497 5.9969 0.0133 9 6 3.5706 5.7713 1.3878 10 6 3.9354 6.8004 2.3143 11 7 4.2235 7.6173 3.0493 12 6 3.1101 4.4694 1.8696 13 6 3.0174 4.2068 3.2406 14 1 3.7776 4.5751 3.9135 15 6 1.9366 3.4645 3.7415 16 7 0.8396 3.3543 3.0410 17 14 2.0668 2.6345 5.4098 18 1 1.5943 3.5668 6.4647 19 1 1.2280 1.4092 5.4200 20 1 3.4819 2.2679 5.6711 21 16 2.3720 2.3593 -1.4433 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 2.1414 1.7308 2.0842 28 1 3.3755 5.2292 -1.9402 29 1 3.9888 6.9557 -0.3503 30 1 0.0806 2.8694 3.4014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:54 Heat of formation + Delta-G solvation = 47.254263 kcal Electronic energy + Delta-G solvation = -15994.885423 eV Core-core repulsion = 13459.541106 eV Total energy + Delta-G solvation = -2535.344317 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.23064 -35.78418 -34.65513 -34.22925 -32.03599 -30.21167 -27.96920 -25.65460 -23.57424 -22.62073 -20.78621 -19.74887 -17.91776 -16.87694 -16.02209 -15.38253 -14.70449 -14.52493 -13.53426 -13.38549 -13.13241 -13.05008 -12.77882 -12.42924 -11.99731 -11.94319 -11.61142 -11.55465 -11.44985 -11.32570 -11.00213 -10.94122 -10.73299 -10.31435 -10.21882 -9.77250 -9.68475 -9.32790 -8.29165 -7.38455 -7.33688 -6.74104 -4.85804 1.69444 2.17442 2.49103 2.83675 2.84311 2.91118 2.93258 3.31967 3.59473 3.89322 4.10849 4.33924 5.16956 5.27945 5.40304 5.45875 5.70576 5.84743 6.04060 6.09762 6.12311 6.27398 6.45016 6.51965 6.59380 6.63486 6.82032 6.97477 7.03965 7.44713 7.51718 7.53772 7.66762 7.92464 8.21183 8.34611 8.80360 9.60507 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.011070 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.647307 B = 2528.854081 C = 4172.806749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.233 4.233 4 C -0.033 4.033 5 C -0.129 4.129 6 C -0.062 4.062 7 C -0.227 4.227 8 C 0.003 3.997 9 C -0.202 4.202 10 C 0.304 3.696 11 N -0.510 5.510 12 C 0.206 3.794 13 C -0.430 4.430 14 H 0.096 0.904 15 C 0.079 3.921 16 N -0.740 5.740 17 Si 0.906 3.094 18 H -0.262 1.262 19 H -0.268 1.268 20 H -0.252 1.252 21 S 0.017 5.983 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 -7.513 -4.007 8.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.348 4.348 4 C -0.062 4.062 5 C -0.137 4.137 6 C -0.178 4.178 7 C -0.251 4.251 8 C -0.020 4.020 9 C -0.210 4.210 10 C -0.005 4.005 11 N -0.189 5.189 12 C 0.198 3.802 13 C -0.456 4.456 14 H 0.114 0.886 15 C -0.147 4.147 16 N -0.360 5.360 17 Si 0.728 3.272 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.175 1.175 21 S 0.280 5.720 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.421 -6.761 -4.427 8.205 hybrid contribution -0.235 -0.329 1.867 1.911 sum -1.656 -7.090 -2.560 7.718 Atomic orbital electron populations 1.21775 0.95358 1.00599 1.02535 1.19856 0.95444 0.90775 1.01664 1.23489 1.15765 1.00550 0.94979 1.19642 0.95924 0.92677 0.97963 1.18911 1.09800 0.94048 0.90919 1.22454 1.02824 0.96982 0.95551 1.19260 1.15481 0.92678 0.97698 1.20229 0.94023 0.96686 0.91072 1.16604 1.24293 0.90792 0.89309 1.25593 0.91042 0.91849 0.92048 1.81026 1.15279 1.12562 1.10030 1.19151 0.83204 0.86376 0.91438 1.19615 1.06574 1.26279 0.93140 0.88590 1.26099 0.94388 0.93724 1.00477 1.69739 1.01734 1.26974 1.37568 0.86291 0.80654 0.79441 0.80803 1.18694 1.19204 1.17549 1.83465 1.71555 1.06512 1.10481 0.92278 0.92757 0.93222 0.91236 0.92008 0.85545 0.88190 0.87620 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 37.16 0.37 -1.64 16 2 C -0.04 -0.57 6.39 -27.88 -0.18 -0.75 16 3 C -0.23 -4.38 5.69 -36.19 -0.21 -4.59 16 4 C -0.03 -0.70 8.11 -40.81 -0.33 -1.03 16 5 C -0.13 -2.96 5.52 -104.71 -0.58 -3.54 16 6 C -0.06 -1.33 6.48 -38.39 -0.25 -1.58 16 7 C -0.23 -4.59 9.94 -39.29 -0.39 -4.99 16 8 C 0.00 0.07 9.68 -39.43 -0.38 -0.31 16 9 C -0.20 -4.61 5.94 -104.27 -0.62 -5.23 16 10 C 0.30 7.08 14.49 -22.47 -0.33 6.75 16 11 N -0.51 -12.18 18.54 41.84 0.78 -11.41 16 12 C 0.21 4.93 5.66 -102.10 -0.58 4.36 16 13 C -0.43 -10.16 8.22 -38.16 -0.31 -10.47 16 14 H 0.10 2.27 7.75 -52.49 -0.41 1.86 16 15 C 0.08 1.73 3.86 -17.27 -0.07 1.66 16 16 N -0.74 -16.51 10.81 55.57 0.60 -15.91 16 17 Si 0.91 16.46 29.61 -169.99 -5.03 11.42 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -4.64 7.11 56.52 0.40 -4.24 16 20 H -0.25 -4.60 7.11 56.52 0.40 -4.19 16 21 S 0.02 0.32 23.27 -107.50 -2.50 -2.18 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.13 2.69 6.06 -52.49 -0.32 2.37 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 LS Contribution 282.34 15.07 4.25 4.25 Total: -1.00 -24.96 282.34 -8.57 -33.53 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -2.82 Total: 1.65 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -3.85 Total: -21.35 kcal Atomic # 7 Polarization: -28.70 SS G_CDS: 1.38 Total: -27.32 kcal Atomic # 14 Polarization: 16.46 SS G_CDS: -5.03 Total: 11.42 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.50 Total: -2.18 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -24.96 -8.57 -33.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.782 kcal (2) G-P(sol) polarization free energy of solvation -24.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds