Wall clock time and date at job start Mon Mar 30 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46977 * 2 1 4 4 C 1.32731 * 124.65630 * 89.99970 * 3 2 1 5 5 C 1.39976 * 115.79523 * 180.02562 * 4 3 2 6 6 C 1.39790 * 112.77938 * 0.02562 * 5 4 3 7 7 C 1.39880 * 120.67358 * 180.02562 * 6 5 4 8 8 C 1.37353 * 122.46232 * 0.02562 * 7 6 5 9 9 C 1.39516 * 120.91382 * 359.95451 * 8 7 6 10 10 C 1.43200 * 120.44668 * 180.02562 * 9 8 7 11 11 N 8.63578 * 108.17395 * 21.81650 * 2 1 3 12 12 C 1.46257 * 119.10318 * 0.02562 * 9 8 7 13 13 C 1.39897 * 120.71647 * 180.02562 * 12 9 8 14 14 H 1.07997 * 119.99659 * 320.59634 * 13 12 9 15 15 C 1.40357 * 120.00067 * 140.60313 * 13 12 9 16 16 N 1.30621 * 119.99938 * 339.83230 * 15 13 12 17 17 Si 1.86799 * 120.00154 * 159.84035 * 15 13 12 18 18 H 1.48501 * 109.47055 * 89.99186 * 17 15 13 19 19 H 1.48495 * 109.47390 * 209.99702 * 17 15 13 20 20 H 1.48502 * 109.46749 * 329.99840 * 17 15 13 21 21 S 1.75482 * 124.66276 * 269.70334 * 3 2 1 22 22 H 1.09003 * 109.47015 * 299.99827 * 1 2 3 23 23 H 1.08992 * 109.47687 * 59.99859 * 1 2 3 24 24 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47545 * 119.99802 * 2 1 3 26 26 H 1.08998 * 109.46936 * 240.00666 * 2 1 3 27 27 H 1.07996 * 122.10445 * 359.97438 * 4 3 2 28 28 H 1.07997 * 118.77175 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.54342 * 179.97438 * 8 7 6 30 30 H 0.97009 * 120.00001 * 182.29874 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2839 2.1325 1.0918 5 6 2.7443 3.4366 0.8762 6 6 2.8554 3.7540 -0.4807 7 6 3.3017 5.0168 -0.8839 8 6 3.6497 5.9969 0.0133 9 6 3.5706 5.7713 1.3878 10 6 3.9354 6.8004 2.3143 11 7 4.2235 7.6173 3.0493 12 6 3.1101 4.4694 1.8696 13 6 3.0174 4.2068 3.2406 14 1 3.7776 4.5751 3.9135 15 6 1.9366 3.4645 3.7415 16 7 0.8396 3.3543 3.0410 17 14 2.0668 2.6345 5.4098 18 1 1.5943 3.5668 6.4647 19 1 1.2280 1.4092 5.4200 20 1 3.4819 2.2679 5.6711 21 16 2.3720 2.3593 -1.4433 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 2.1414 1.7308 2.0842 28 1 3.3755 5.2292 -1.9402 29 1 3.9888 6.9557 -0.3503 30 1 0.0806 2.8694 3.4014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:54 Heat of formation + Delta-G solvation = 37.389789 kcal Electronic energy + Delta-G solvation = -15995.313179 eV Core-core repulsion = 13459.541106 eV Total energy + Delta-G solvation = -2535.772073 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85643 -37.47781 -36.24741 -35.88315 -33.44630 -31.89438 -29.51854 -27.27062 -25.02558 -24.19738 -22.35377 -21.28309 -19.55744 -18.53207 -17.65546 -16.91180 -16.28250 -15.98568 -14.91654 -14.81387 -14.76759 -14.66689 -14.32675 -14.01092 -13.63616 -13.50285 -13.25435 -13.14509 -12.98739 -12.91828 -12.42532 -12.28029 -12.11811 -11.79395 -11.65108 -11.37070 -11.26487 -10.94505 -9.94021 -9.01295 -8.94590 -8.32767 -6.58656 0.06854 0.49056 0.94542 1.31992 1.34939 1.40202 1.47908 1.70587 2.05894 2.09579 2.41792 2.60100 3.45247 3.60708 4.02846 4.31056 4.35695 4.51086 4.55373 4.67716 4.88261 4.96877 4.98863 5.04591 5.14246 5.23755 5.34329 5.41938 5.46781 5.81880 5.85628 5.90945 6.04291 6.19549 6.51709 6.64872 6.98662 8.00338 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.011070 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.647307 B = 2528.854081 C = 4172.806749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C -0.219 4.219 4 C -0.064 4.064 5 C -0.146 4.146 6 C -0.094 4.094 7 C -0.222 4.222 8 C 0.001 3.999 9 C -0.227 4.227 10 C 0.310 3.690 11 N -0.532 5.532 12 C 0.181 3.819 13 C -0.459 4.459 14 H 0.082 0.918 15 C 0.053 3.947 16 N -0.762 5.762 17 Si 0.965 3.035 18 H -0.265 1.265 19 H -0.249 1.249 20 H -0.256 1.256 21 S 0.067 5.933 22 H 0.041 0.959 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.134 0.866 30 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -9.344 -5.222 10.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.334 4.334 4 C -0.092 4.092 5 C -0.154 4.154 6 C -0.210 4.210 7 C -0.246 4.246 8 C -0.022 4.022 9 C -0.236 4.236 10 C 0.002 3.998 11 N -0.212 5.212 12 C 0.174 3.826 13 C -0.486 4.486 14 H 0.100 0.900 15 C -0.171 4.171 16 N -0.383 5.383 17 Si 0.785 3.215 18 H -0.190 1.190 19 H -0.172 1.172 20 H -0.180 1.180 21 S 0.330 5.670 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.072 -8.586 -5.669 10.495 hybrid contribution -0.062 0.161 2.093 2.100 sum -2.134 -8.426 -3.576 9.398 Atomic orbital electron populations 1.21732 0.94238 1.02321 1.01524 1.20051 0.96291 0.88444 1.03275 1.24097 1.12786 1.01986 0.94570 1.19624 0.98385 0.92703 0.98525 1.19165 1.10049 0.94633 0.91524 1.22870 1.03474 0.98708 0.95965 1.19630 1.13848 0.92089 0.99045 1.20512 0.93619 0.98048 0.90048 1.16853 1.25771 0.90557 0.90406 1.25784 0.90556 0.91647 0.91806 1.80999 1.16438 1.13339 1.10431 1.19490 0.83899 0.87137 0.92116 1.19703 1.07376 1.28261 0.93243 0.89991 1.26671 0.93492 0.93575 1.03346 1.69741 1.02245 1.27339 1.39004 0.85432 0.80502 0.78953 0.76663 1.18998 1.17247 1.17957 1.83215 1.70286 1.04409 1.09043 0.93986 0.93060 0.90192 0.90189 0.89830 0.86285 0.85428 0.84864 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.89 71.98 0.71 -2.77 16 2 C -0.04 -1.11 6.39 29.85 0.19 -0.92 16 3 C -0.22 -7.83 5.69 24.51 0.14 -7.69 16 4 C -0.06 -2.68 8.11 21.52 0.17 -2.50 16 5 C -0.15 -6.73 5.52 -19.92 -0.11 -6.84 16 6 C -0.09 -3.94 6.48 23.04 0.15 -3.79 16 7 C -0.22 -8.68 9.94 22.46 0.22 -8.46 16 8 C 0.00 0.04 9.68 22.37 0.22 0.26 16 9 C -0.23 -10.60 5.94 -19.64 -0.12 -10.72 16 10 C 0.31 14.82 14.49 88.33 1.28 16.10 16 11 N -0.53 -26.00 18.54 19.00 0.35 -25.65 16 12 C 0.18 8.93 5.66 -18.23 -0.10 8.82 16 13 C -0.46 -22.53 8.22 23.19 0.19 -22.34 16 14 H 0.08 4.09 7.75 -2.91 -0.02 4.07 16 15 C 0.05 2.36 3.86 85.39 0.33 2.69 16 16 N -0.76 -34.40 10.81 21.90 0.24 -34.16 16 17 Si 0.97 33.88 29.61 68.60 2.03 35.91 16 18 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 19 H -0.25 -7.92 7.11 99.48 0.71 -7.22 16 20 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 21 S 0.07 2.33 23.27 -56.49 -1.31 1.02 16 22 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.12 5.10 6.06 -2.91 -0.02 5.08 16 28 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 29 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.30 12.16 8.29 -92.70 -0.77 11.39 16 Total: -1.00 -54.01 282.34 5.75 -48.26 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.17 Total: 12.79 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 3.28 Total: -38.17 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.59 Total: -59.81 kcal Atomic # 14 Polarization: 33.88 SS G_CDS: 2.03 Total: 35.91 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.31 Total: 1.02 kcal Total: -54.01 5.75 -48.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.650 kcal (2) G-P(sol) polarization free energy of solvation -54.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds