Wall clock time and date at job start Mon Mar 30 2020 06:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47019 * 2 1 4 4 C 1.36103 * 119.74561 * 264.99581 * 3 2 1 5 5 C 1.38865 * 120.47906 * 179.97438 * 4 3 2 6 6 C 1.37607 * 120.23030 * 0.02562 * 5 4 3 7 7 C 1.39882 * 120.34892 * 359.97438 * 6 5 4 8 8 S 1.75850 * 129.77327 * 180.02562 * 7 6 5 9 9 C 1.75197 * 92.73904 * 179.97438 * 8 7 6 10 10 C 1.39146 * 124.64462 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00123 * 180.02562 * 10 9 8 12 12 C 1.40641 * 119.99855 * 0.04001 * 10 9 8 13 13 N 1.30481 * 120.00170 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99904 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47113 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47281 * 119.99703 * 14 12 10 17 17 H 1.48501 * 109.47277 * 240.00168 * 14 12 10 18 18 C 1.38883 * 110.70963 * 359.97438 * 9 8 7 19 19 C 1.43198 * 123.26506 * 180.02562 * 18 9 8 20 20 N 3.21501 * 80.39557 * 102.78934 * 2 1 3 21 21 C 1.39892 * 119.50435 * 0.02562 * 7 6 5 22 22 H 1.09006 * 109.46631 * 299.99990 * 1 2 3 23 23 H 1.09002 * 109.47242 * 59.99697 * 1 2 3 24 24 H 1.08999 * 109.47363 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46755 * 239.99757 * 2 1 3 26 26 H 1.08996 * 109.46818 * 120.00161 * 2 1 3 27 27 H 1.07998 * 119.75577 * 0.26472 * 4 3 2 28 28 H 1.08003 * 119.88046 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.82194 * 180.02562 * 6 5 4 30 30 H 0.97002 * 120.00187 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3546 2.0231 -1.1772 5 6 2.8184 3.3319 -1.1950 6 6 2.9573 4.0337 -0.0195 7 6 2.6326 3.4363 1.2030 8 16 2.7127 4.0927 2.8324 9 6 2.1208 2.6081 3.5500 10 6 1.9248 2.4118 4.9135 11 1 1.5561 1.4633 5.2750 12 6 2.2065 3.4488 5.8208 13 7 2.6521 4.5948 5.3841 14 14 1.9426 3.1856 7.6512 15 1 1.4353 1.8097 7.8854 16 1 3.2305 3.3664 8.3681 17 1 0.9528 4.1712 8.1555 18 6 1.8741 1.6539 2.5714 19 6 1.3821 0.3407 2.8612 20 7 0.9936 -0.7017 3.0913 21 6 2.1652 2.1179 1.2229 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2444 1.4807 -2.1046 28 1 3.0717 3.8003 -2.1346 29 1 3.3182 5.0514 -0.0410 30 1 2.8468 5.3099 6.0099 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229816.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:30 Heat of formation + Delta-G solvation = 15.302835 kcal Electronic energy + Delta-G solvation = -15990.471352 eV Core-core repulsion = 13453.741517 eV Total energy + Delta-G solvation = -2536.729835 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25294 -37.52556 -36.51431 -34.97693 -34.45733 -31.03585 -30.06771 -27.64933 -24.94477 -24.24521 -22.32526 -22.03474 -19.72435 -18.08631 -17.52184 -17.05709 -16.09911 -15.90472 -15.36117 -15.03005 -14.57612 -14.49318 -14.32760 -13.83570 -13.67014 -13.49971 -13.38502 -13.19741 -13.02234 -12.71391 -12.66025 -12.11013 -12.03204 -11.95031 -11.73657 -11.39438 -11.04761 -10.97694 -9.95495 -9.32154 -9.09259 -8.20108 -6.82003 0.34063 0.68502 1.02127 1.28440 1.31974 1.50678 1.53809 1.74807 2.07298 2.31714 2.49420 2.86773 3.34896 3.96212 4.02335 4.11543 4.38845 4.41624 4.52772 4.62366 4.71310 4.75247 4.94341 4.96978 5.04381 5.20575 5.28624 5.42790 5.46978 5.69084 5.75489 5.84085 5.97341 6.12912 6.32943 6.43271 7.19126 7.73775 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.008149 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.531511 B = 3435.234040 C = 4489.804221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.079 4.079 3 C -0.119 4.119 4 C -0.104 4.104 5 C -0.159 4.159 6 C -0.074 4.074 7 C -0.258 4.258 8 S 0.164 5.836 9 C 0.054 3.946 10 C -0.376 4.376 11 H 0.090 0.910 12 C 0.027 3.973 13 N -0.760 5.760 14 Si 1.005 2.995 15 H -0.265 1.265 16 H -0.248 1.248 17 H -0.248 1.248 18 C -0.332 4.332 19 C 0.328 3.672 20 N -0.553 5.553 21 C 0.014 3.986 22 H 0.024 0.976 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.141 0.859 28 H 0.150 0.850 29 H 0.131 0.869 30 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 4.241 -3.944 5.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 C -0.121 4.121 4 C -0.124 4.124 5 C -0.179 4.179 6 C -0.097 4.097 7 C -0.372 4.372 8 S 0.424 5.576 9 C -0.069 4.069 10 C -0.409 4.409 11 H 0.108 0.892 12 C -0.197 4.197 13 N -0.384 5.384 14 Si 0.822 3.178 15 H -0.189 1.189 16 H -0.172 1.172 17 H -0.172 1.172 18 C -0.344 4.344 19 C 0.022 3.978 20 N -0.236 5.236 21 C 0.006 3.994 22 H 0.044 0.956 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.159 0.841 28 H 0.168 0.832 29 H 0.149 0.851 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.246 4.246 -2.981 5.335 hybrid contribution -0.411 -1.174 0.233 1.266 sum 0.835 3.072 -2.748 4.205 Atomic orbital electron populations 1.21594 0.94964 1.01098 1.01129 1.20478 0.96292 0.93174 1.01760 1.19582 1.04004 0.96409 0.92110 1.20660 0.99344 0.95693 0.96665 1.21066 1.04053 0.94871 0.97861 1.20654 0.99359 0.99619 0.90032 1.23823 1.11989 0.99029 1.02389 1.84475 1.70578 1.12372 0.90143 1.21604 0.93804 0.95327 0.96142 1.19730 1.30657 1.00386 0.90144 0.89165 1.27259 0.91478 0.92912 1.08100 1.68454 1.24762 1.03869 1.41330 0.84757 0.80347 0.80173 0.72493 1.18924 1.17183 1.17183 1.15656 1.35482 0.91065 0.92206 1.25143 0.90358 0.91697 0.90606 1.80975 1.18675 1.13277 1.10684 1.18659 0.96458 0.92852 0.91414 0.95638 0.91144 0.92438 0.89554 0.94008 0.84112 0.83246 0.85103 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.61 71.98 0.69 -3.96 16 2 C -0.08 -2.98 5.35 29.85 0.16 -2.82 16 3 C -0.12 -4.78 5.16 -19.59 -0.10 -4.88 16 4 C -0.10 -3.42 9.56 21.92 0.21 -3.21 16 5 C -0.16 -4.94 10.03 22.27 0.22 -4.72 16 6 C -0.07 -2.66 10.07 22.52 0.23 -2.43 16 7 C -0.26 -11.24 6.43 23.07 0.15 -11.09 16 8 S 0.16 7.35 20.00 -56.49 -1.13 6.22 16 9 C 0.05 2.69 6.13 22.64 0.14 2.82 16 10 C -0.38 -18.10 8.92 23.07 0.21 -17.90 16 11 H 0.09 4.47 7.37 -2.91 -0.02 4.45 16 12 C 0.03 1.12 5.51 85.48 0.47 1.59 16 13 N -0.76 -31.17 10.54 21.95 0.23 -30.94 16 14 Si 1.00 31.60 29.57 68.60 2.03 33.63 16 15 H -0.27 -8.88 7.11 99.48 0.71 -8.17 16 16 H -0.25 -7.23 7.11 99.48 0.71 -6.52 16 17 H -0.25 -7.23 7.11 99.48 0.71 -6.52 16 18 C -0.33 -16.80 5.95 -19.99 -0.12 -16.92 16 19 C 0.33 16.78 10.63 88.33 0.94 17.72 16 20 N -0.55 -28.27 18.11 19.00 0.34 -27.93 16 21 C 0.01 0.66 5.97 -20.22 -0.12 0.54 16 22 H 0.02 1.04 7.20 -2.38 -0.02 1.02 16 23 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.09 2.68 8.02 -2.39 -0.02 2.66 16 26 H 0.04 1.81 5.45 -2.39 -0.01 1.80 16 27 H 0.14 3.64 8.04 -2.91 -0.02 3.62 16 28 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.32 11.30 8.29 -92.71 -0.77 10.53 16 Total: -1.00 -55.76 275.64 5.72 -50.05 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.17 Total: 14.24 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 3.07 Total: -45.26 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.58 Total: -58.87 kcal Atomic # 14 Polarization: 31.60 SS G_CDS: 2.03 Total: 33.63 kcal Atomic # 16 Polarization: 7.35 SS G_CDS: -1.13 Total: 6.22 kcal Total: -55.76 5.72 -50.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229816.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.348 kcal (2) G-P(sol) polarization free energy of solvation -55.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds