Wall clock time and date at job start Mon Mar 30 2020 06:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46758 * 2 1 4 4 C 1.35715 * 119.97710 * 265.01376 * 3 2 1 5 5 C 1.40503 * 120.87478 * 180.02562 * 4 3 2 6 6 S 1.75973 * 129.94503 * 179.97438 * 5 4 3 7 7 C 1.75191 * 92.53401 * 179.97438 * 6 5 4 8 8 C 1.33814 * 111.35301 * 0.26423 * 7 6 5 9 9 C 1.43198 * 122.86834 * 179.73733 * 8 7 6 10 10 N 7.66026 * 108.02861 * 13.28788 * 2 1 3 11 11 C 1.39872 * 120.08634 * 359.96280 * 5 4 3 12 12 C 1.40175 * 119.16198 * 0.02562 * 11 5 4 13 13 C 1.40025 * 120.04858 * 359.97438 * 12 11 5 14 14 C 1.41243 * 120.11176 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00433 * 153.95368 * 14 13 12 16 16 C 1.39886 * 119.99557 * 333.95815 * 14 13 12 17 17 N 1.30881 * 119.99965 * 343.06007 * 16 14 13 18 18 Si 1.86807 * 119.99787 * 163.05801 * 16 14 13 19 19 H 1.48500 * 109.46813 * 60.00269 * 18 16 14 20 20 H 1.48497 * 109.46947 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47321 * 300.00249 * 18 16 14 22 22 H 1.08998 * 109.47597 * 299.99696 * 1 2 3 23 23 H 1.08998 * 109.47178 * 60.00632 * 1 2 3 24 24 H 1.09007 * 109.46715 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47166 * 239.99825 * 2 1 3 26 26 H 1.08993 * 109.47278 * 119.99857 * 2 1 3 27 27 H 1.08006 * 119.56616 * 0.02562 * 4 3 2 28 28 H 1.08000 * 124.32084 * 179.97438 * 7 6 5 29 29 H 1.08003 * 119.97366 * 179.97438 * 12 11 5 30 30 H 0.97000 * 119.99674 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3545 2.0261 -1.1711 5 6 2.8251 3.3499 -1.1930 6 16 3.3072 4.3552 -2.5544 7 6 3.6906 5.7131 -1.5160 8 6 3.4729 5.4189 -0.2289 9 6 3.7107 6.3505 0.8322 10 7 3.9008 7.0891 1.6742 11 6 2.9665 4.0636 0.0016 12 6 2.6342 3.4410 1.2127 13 6 2.1666 2.1211 1.2174 14 6 1.8318 1.4923 2.4370 15 1 1.1093 0.6897 2.4503 16 6 2.4361 1.9092 3.6277 17 7 3.5285 2.6289 3.5901 18 14 1.6837 1.4386 5.2715 19 1 1.6398 -0.0410 5.3903 20 1 2.5085 1.9988 6.3719 21 1 0.3050 1.9833 5.3590 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.2480 1.4831 -2.0987 28 1 4.0602 6.6645 -1.8692 29 1 2.7388 3.9797 2.1429 30 1 3.9473 2.9183 4.4158 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229830.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:24 Heat of formation + Delta-G solvation = 35.522693 kcal Electronic energy + Delta-G solvation = -15902.983984 eV Core-core repulsion = 13367.130948 eV Total energy + Delta-G solvation = -2535.853037 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22798 -38.13204 -36.44326 -35.41594 -33.29343 -31.46887 -29.41061 -27.42855 -25.21335 -24.28124 -22.81968 -21.35568 -19.22688 -18.49676 -17.83697 -16.85173 -16.02030 -15.93698 -15.28620 -15.14513 -14.62386 -14.47801 -14.30626 -14.03605 -13.87175 -13.56042 -13.35906 -13.08381 -12.92079 -12.82323 -12.46812 -12.37700 -11.98852 -11.68320 -11.48560 -11.26024 -11.19114 -10.94749 -10.06728 -9.09480 -8.65212 -8.42398 -6.29783 -0.18489 0.78476 0.79239 1.15517 1.16307 1.36023 1.45038 1.47791 1.65357 2.16814 2.35490 2.72431 3.21094 3.63400 3.87363 4.26418 4.39959 4.53122 4.71198 4.78789 4.85560 4.99657 5.04900 5.17390 5.21296 5.28653 5.39952 5.55316 5.65281 5.79702 5.82251 6.08489 6.26621 6.46035 6.63504 6.91162 6.97664 8.29142 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017387 B = 0.008872 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.990941 B = 3155.201516 C = 4594.227037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.149 4.149 4 C -0.062 4.062 5 C -0.255 4.255 6 S 0.153 5.847 7 C -0.117 4.117 8 C -0.072 4.072 9 C 0.297 3.703 10 N -0.471 5.471 11 C -0.044 4.044 12 C -0.186 4.186 13 C 0.092 3.908 14 C -0.474 4.474 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.823 5.823 18 Si 0.971 3.029 19 H -0.250 1.250 20 H -0.278 1.278 21 H -0.262 1.262 22 H 0.039 0.961 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.131 0.869 28 H 0.207 0.793 29 H 0.089 0.911 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 -1.771 -9.726 10.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.084 4.084 5 C -0.369 4.369 6 S 0.417 5.583 7 C -0.256 4.256 8 C -0.091 4.091 9 C -0.018 4.018 10 N -0.149 5.149 11 C -0.050 4.050 12 C -0.209 4.209 13 C 0.089 3.911 14 C -0.503 4.503 15 H 0.111 0.889 16 C -0.183 4.183 17 N -0.449 5.449 18 Si 0.792 3.208 19 H -0.174 1.174 20 H -0.203 1.203 21 H -0.186 1.186 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.149 0.851 28 H 0.224 0.776 29 H 0.107 0.893 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.830 -0.758 -9.876 10.072 hybrid contribution -0.089 0.070 2.568 2.570 sum -1.919 -0.688 -7.308 7.587 Atomic orbital electron populations 1.21666 0.94742 1.01666 1.01295 1.20264 0.96216 0.91818 1.01742 1.19891 1.05667 0.97098 0.92486 1.19884 0.99183 0.91679 0.97647 1.22171 1.18626 1.00548 0.95584 1.83101 1.67696 1.01529 1.05984 1.25771 1.00785 1.04776 0.94246 1.15958 1.11791 0.91658 0.89695 1.25456 0.92014 0.91890 0.92472 1.81110 1.11655 1.12520 1.09615 1.18817 1.00762 0.91012 0.94435 1.20902 1.09908 0.95716 0.94363 1.17584 0.89670 0.90604 0.93233 1.19820 1.21900 1.17219 0.91381 0.88926 1.26761 0.93488 0.93168 1.04843 1.69925 1.15017 1.28700 1.31251 0.85404 0.79122 0.80144 0.76141 1.17404 1.20332 1.18598 0.94194 0.92719 0.91125 0.90708 0.92403 0.85123 0.77617 0.89296 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.78 71.98 0.70 -3.45 16 2 C -0.06 -2.19 5.39 29.85 0.16 -2.03 16 3 C -0.15 -6.31 5.14 -19.75 -0.10 -6.41 16 4 C -0.06 -2.39 9.60 22.24 0.21 -2.17 16 5 C -0.26 -9.94 6.48 23.22 0.15 -9.79 16 6 S 0.15 4.26 23.21 -56.49 -1.31 2.95 16 7 C -0.12 -3.31 10.83 66.81 0.72 -2.59 16 8 C -0.07 -2.75 5.82 -20.88 -0.12 -2.88 16 9 C 0.30 12.27 15.35 88.33 1.36 13.62 16 10 N -0.47 -20.62 18.54 19.00 0.35 -20.27 16 11 C -0.04 -1.97 6.00 -20.26 -0.12 -2.09 16 12 C -0.19 -9.70 8.47 23.17 0.20 -9.50 16 13 C 0.09 4.65 5.55 -21.41 -0.12 4.53 16 14 C -0.47 -23.75 8.08 23.41 0.19 -23.56 16 15 H 0.09 4.33 6.07 -2.91 -0.02 4.31 16 16 C 0.03 1.62 5.13 85.23 0.44 2.06 16 17 N -0.82 -43.94 11.00 21.82 0.24 -43.70 16 18 Si 0.97 38.11 29.59 68.60 2.03 40.14 16 19 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 20 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 22 H 0.04 1.36 7.28 -2.39 -0.02 1.34 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.07 2.19 8.03 -2.38 -0.02 2.18 16 26 H 0.06 2.17 7.05 -2.39 -0.02 2.15 16 27 H 0.13 4.09 8.04 -2.91 -0.02 4.06 16 28 H 0.21 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.09 5.12 6.18 -2.91 -0.02 5.11 16 30 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 Total: -1.00 -59.55 280.54 6.16 -53.40 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.18 Total: 11.75 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 3.67 Total: -44.26 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: 0.59 Total: -63.97 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.31 Total: 2.95 kcal Total: -59.55 6.16 -53.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229830.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.921 kcal (2) G-P(sol) polarization free energy of solvation -59.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds