Wall clock time and date at job start Mon Mar 30 2020 06:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46667 * 2 1 4 4 C 1.31796 * 122.52783 * 264.70742 * 3 2 1 5 5 S 1.75218 * 111.52734 * 179.89713 * 4 3 2 6 6 C 1.76151 * 92.26048 * 0.31879 * 5 4 3 7 7 C 1.39901 * 129.63677 * 179.80401 * 6 5 4 8 8 C 1.38539 * 120.72122 * 180.02562 * 7 6 5 9 9 C 1.43199 * 120.48449 * 180.02562 * 8 7 6 10 10 N 7.88595 * 101.21898 * 42.47073 * 2 1 3 11 11 C 1.46840 * 119.02696 * 0.02562 * 8 7 6 12 12 C 1.40744 * 120.44695 * 179.97438 * 11 8 7 13 13 H 1.08001 * 119.99890 * 24.99465 * 12 11 8 14 14 C 1.40115 * 120.00081 * 204.98347 * 12 11 8 15 15 N 1.30762 * 119.99516 * 17.60736 * 14 12 11 16 16 Si 1.86796 * 120.00501 * 197.60728 * 14 12 11 17 17 H 1.48504 * 109.46878 * 89.99985 * 16 14 12 18 18 H 1.48488 * 109.47478 * 210.00105 * 16 14 12 19 19 H 1.48499 * 109.47156 * 330.00606 * 16 14 12 20 20 C 1.39803 * 119.09824 * 0.02562 * 11 8 7 21 21 C 1.40336 * 109.55765 * 359.82860 * 6 5 4 22 22 H 1.08995 * 109.47300 * 59.99913 * 1 2 3 23 23 H 1.08996 * 109.47194 * 299.99193 * 1 2 3 24 24 H 1.09003 * 109.46393 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47300 * 120.00087 * 2 1 3 26 26 H 1.08996 * 109.47194 * 240.00806 * 2 1 3 27 27 H 1.08006 * 124.23451 * 0.03118 * 4 3 2 28 28 H 1.08004 * 119.63624 * 0.02697 * 7 6 5 29 29 H 0.96996 * 119.99769 * 184.64373 * 15 14 12 30 30 H 1.07996 * 119.76651 * 179.97438 * 20 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3651 2.0549 -1.1065 5 16 2.9064 3.6878 -0.7738 6 6 2.6738 3.4861 0.9606 7 6 2.8982 4.3925 2.0024 8 6 2.6498 4.0346 3.3176 9 6 2.8807 4.9665 4.3800 10 7 3.0643 5.7057 5.2230 11 6 2.1462 2.6858 3.6060 12 6 1.8842 2.2905 4.9311 13 1 1.6569 3.0335 5.6813 14 6 1.9179 0.9332 5.2771 15 7 2.5141 0.0733 4.4928 16 14 1.1114 0.3519 6.8585 17 1 -0.3041 -0.0075 6.5891 18 1 1.8344 -0.8379 7.3747 19 1 1.1623 1.4391 7.8688 20 6 1.9316 1.7992 2.5465 21 6 2.1923 2.1944 1.2229 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 0.5137 0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 2.3089 1.6228 -2.0947 28 1 3.2691 5.3819 1.7790 29 1 2.4797 -0.8743 4.6971 30 1 1.5618 0.8044 2.7464 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396230526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:27 Heat of formation + Delta-G solvation = 42.323965 kcal Electronic energy + Delta-G solvation = -15868.668380 eV Core-core repulsion = 13333.110269 eV Total energy + Delta-G solvation = -2535.558111 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.44615 -36.19883 -34.93655 -33.85229 -31.28698 -29.83340 -28.74753 -25.89819 -23.65132 -22.69513 -21.25925 -18.99937 -18.00521 -17.11880 -16.25671 -15.42244 -14.67111 -14.13755 -13.63528 -13.59752 -13.11602 -13.00951 -12.68328 -12.56907 -12.11812 -11.94536 -11.75355 -11.57794 -11.44859 -11.39454 -11.16917 -10.84719 -10.61616 -10.24990 -10.06803 -9.92660 -9.69003 -9.38100 -8.47210 -7.55835 -7.16822 -6.91972 -4.70270 1.46086 2.43668 2.46246 2.75725 2.89774 2.91195 2.95171 3.01750 3.67672 3.75847 4.07091 4.35207 5.15799 5.26377 5.33160 5.38214 5.58269 5.75200 5.79789 5.99510 6.21049 6.25733 6.39794 6.51851 6.59763 6.62042 6.76730 6.92108 7.05629 7.15546 7.38854 7.57318 7.71776 8.12497 8.36376 8.42803 8.62906 9.72835 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.008770 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.443714 B = 3191.922300 C = 4606.388892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 C -0.077 4.077 4 C -0.198 4.198 5 S -0.004 6.004 6 C -0.237 4.237 7 C 0.003 3.997 8 C -0.141 4.141 9 C 0.298 3.702 10 N -0.492 5.492 11 C 0.145 3.855 12 C -0.429 4.429 13 H 0.086 0.914 14 C 0.077 3.923 15 N -0.764 5.764 16 Si 0.913 3.087 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.258 1.258 20 C -0.137 4.137 21 C -0.024 4.024 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.150 0.850 28 H 0.105 0.895 29 H 0.291 0.709 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 -3.922 -7.345 8.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.090 4.090 4 C -0.331 4.331 5 S 0.256 5.744 6 C -0.351 4.351 7 C -0.023 4.023 8 C -0.148 4.148 9 C -0.012 4.012 10 N -0.171 5.171 11 C 0.139 3.861 12 C -0.457 4.457 13 H 0.105 0.895 14 C -0.146 4.146 15 N -0.386 5.386 16 Si 0.736 3.264 17 H -0.186 1.186 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.159 4.159 21 C -0.030 4.030 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.167 0.833 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.913 -1.852 -6.986 7.476 hybrid contribution -0.756 -1.746 1.070 2.184 sum -2.669 -3.599 -5.916 7.421 Atomic orbital electron populations 1.21705 0.95135 1.01023 1.02233 1.20252 0.95766 0.92075 1.02488 1.19841 1.00755 0.96612 0.91805 1.24496 1.09198 0.98230 1.01148 1.83444 1.75458 1.13410 1.02079 1.21498 1.20125 0.98883 0.94549 1.19812 0.96287 0.96440 0.89720 1.16802 1.16044 0.94413 0.87546 1.25622 0.91641 0.91605 0.92380 1.81045 1.13345 1.12198 1.10477 1.18127 0.86811 0.87758 0.93377 1.19684 1.38273 0.92832 0.94922 0.89550 1.26039 0.92544 0.96557 0.99449 1.69759 1.27644 1.04476 1.36754 0.86185 0.80061 0.79207 0.80965 1.18623 1.19759 1.18125 1.21075 1.05811 1.00964 0.88029 1.19029 0.99183 0.91443 0.93369 0.93116 0.92049 0.92941 0.90291 0.91890 0.83269 0.87695 0.89806 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 37.16 0.37 -1.59 16 2 C -0.07 -1.00 6.01 -27.88 -0.17 -1.16 16 3 C -0.08 -1.38 5.23 -103.59 -0.54 -1.92 16 4 C -0.20 -3.27 10.72 28.84 0.31 -2.96 16 5 S 0.00 -0.07 23.23 -107.50 -2.50 -2.57 16 6 C -0.24 -4.91 6.46 -38.17 -0.25 -5.16 16 7 C 0.00 0.06 9.75 -38.85 -0.38 -0.32 16 8 C -0.14 -3.19 5.92 -104.38 -0.62 -3.81 16 9 C 0.30 6.84 14.28 -22.47 -0.32 6.52 16 10 N -0.49 -11.55 18.54 41.84 0.78 -10.78 16 11 C 0.15 3.46 5.71 -104.89 -0.60 2.86 16 12 C -0.43 -10.24 8.56 -37.93 -0.32 -10.56 16 13 H 0.09 2.08 7.38 -52.49 -0.39 1.70 16 14 C 0.08 1.70 5.14 -17.30 -0.09 1.61 16 15 N -0.76 -17.08 10.97 55.56 0.61 -16.47 16 16 Si 0.91 16.88 29.60 -169.99 -5.03 11.85 16 17 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 18 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 19 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 20 C -0.14 -3.09 8.42 -38.12 -0.32 -3.42 16 21 C -0.02 -0.51 5.99 -105.30 -0.63 -1.14 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.28 7.71 -51.93 -0.40 0.88 16 26 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.15 2.01 8.06 -52.48 -0.42 1.58 16 28 H 0.11 1.96 8.06 -52.48 -0.42 1.54 16 29 H 0.29 5.82 8.30 -40.82 -0.34 5.48 16 30 H 0.13 3.00 5.76 -52.49 -0.30 2.70 16 LS Contribution 283.53 15.07 4.27 4.27 Total: -1.00 -24.72 283.53 -8.19 -32.91 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -2.76 Total: 1.85 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -3.56 Total: -21.07 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: 1.39 Total: -27.25 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.50 Total: -2.57 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -24.72 -8.19 -32.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.231 kcal (2) G-P(sol) polarization free energy of solvation -24.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds