Wall clock time and date at job start Mon Mar 30 2020 06:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46667 * 2 1 4 4 C 1.31796 * 122.52783 * 264.70742 * 3 2 1 5 5 S 1.75218 * 111.52734 * 179.89713 * 4 3 2 6 6 C 1.76151 * 92.26048 * 0.31879 * 5 4 3 7 7 C 1.39901 * 129.63677 * 179.80401 * 6 5 4 8 8 C 1.38539 * 120.72122 * 180.02562 * 7 6 5 9 9 C 1.43199 * 120.48449 * 180.02562 * 8 7 6 10 10 N 7.88595 * 101.21898 * 42.47073 * 2 1 3 11 11 C 1.46840 * 119.02696 * 0.02562 * 8 7 6 12 12 C 1.40744 * 120.44695 * 179.97438 * 11 8 7 13 13 H 1.08001 * 119.99890 * 24.99465 * 12 11 8 14 14 C 1.40115 * 120.00081 * 204.98347 * 12 11 8 15 15 N 1.30762 * 119.99516 * 17.60736 * 14 12 11 16 16 Si 1.86796 * 120.00501 * 197.60728 * 14 12 11 17 17 H 1.48504 * 109.46878 * 89.99985 * 16 14 12 18 18 H 1.48488 * 109.47478 * 210.00105 * 16 14 12 19 19 H 1.48499 * 109.47156 * 330.00606 * 16 14 12 20 20 C 1.39803 * 119.09824 * 0.02562 * 11 8 7 21 21 C 1.40336 * 109.55765 * 359.82860 * 6 5 4 22 22 H 1.08995 * 109.47300 * 59.99913 * 1 2 3 23 23 H 1.08996 * 109.47194 * 299.99193 * 1 2 3 24 24 H 1.09003 * 109.46393 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47300 * 120.00087 * 2 1 3 26 26 H 1.08996 * 109.47194 * 240.00806 * 2 1 3 27 27 H 1.08006 * 124.23451 * 0.03118 * 4 3 2 28 28 H 1.08004 * 119.63624 * 0.02697 * 7 6 5 29 29 H 0.96996 * 119.99769 * 184.64373 * 15 14 12 30 30 H 1.07996 * 119.76651 * 179.97438 * 20 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3651 2.0549 -1.1065 5 16 2.9064 3.6878 -0.7738 6 6 2.6738 3.4861 0.9606 7 6 2.8982 4.3925 2.0024 8 6 2.6498 4.0346 3.3176 9 6 2.8807 4.9665 4.3800 10 7 3.0643 5.7057 5.2230 11 6 2.1462 2.6858 3.6060 12 6 1.8842 2.2905 4.9311 13 1 1.6569 3.0335 5.6813 14 6 1.9179 0.9332 5.2771 15 7 2.5141 0.0733 4.4928 16 14 1.1114 0.3519 6.8585 17 1 -0.3041 -0.0075 6.5891 18 1 1.8344 -0.8379 7.3747 19 1 1.1623 1.4391 7.8688 20 6 1.9316 1.7992 2.5465 21 6 2.1923 2.1944 1.2229 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 0.5137 0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 2.3089 1.6228 -2.0947 28 1 3.2691 5.3819 1.7790 29 1 2.4797 -0.8743 4.6971 30 1 1.5618 0.8044 2.7464 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396230526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:26 Heat of formation + Delta-G solvation = 32.608723 kcal Electronic energy + Delta-G solvation = -15869.089665 eV Core-core repulsion = 13333.110269 eV Total energy + Delta-G solvation = -2535.979396 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03526 -37.82049 -36.64948 -35.46114 -32.66852 -31.48764 -30.29073 -27.58804 -24.92624 -24.28936 -22.87958 -20.45395 -19.69736 -18.77282 -17.75978 -17.01039 -16.19165 -15.66380 -15.01901 -14.96136 -14.74993 -14.70900 -14.23076 -14.12211 -13.64592 -13.55151 -13.26645 -13.19172 -12.99422 -12.82144 -12.61262 -12.36351 -11.98913 -11.64785 -11.55115 -11.46138 -11.25229 -10.97740 -10.08638 -9.20343 -8.82199 -8.43063 -6.44670 -0.14415 0.77751 1.01189 1.23231 1.37666 1.40502 1.49019 1.51916 1.92131 2.14609 2.36755 2.61003 3.41755 3.53589 3.96128 4.07316 4.30421 4.41617 4.62601 4.76696 4.84979 4.88701 5.03667 5.05994 5.14964 5.18988 5.33108 5.45362 5.48960 5.56673 5.74573 5.91747 6.02723 6.38052 6.62878 6.69435 6.81692 8.10217 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.008770 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.443714 B = 3191.922300 C = 4606.388892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C -0.101 4.101 4 C -0.180 4.180 5 S 0.032 5.968 6 C -0.258 4.258 7 C 0.005 3.995 8 C -0.162 4.162 9 C 0.305 3.695 10 N -0.509 5.509 11 C 0.125 3.875 12 C -0.462 4.462 13 H 0.071 0.929 14 C 0.047 3.953 15 N -0.785 5.785 16 Si 0.975 3.025 17 H -0.252 1.252 18 H -0.260 1.260 19 H -0.269 1.269 20 C -0.155 4.155 21 C -0.030 4.030 22 H 0.062 0.938 23 H 0.035 0.965 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.191 0.809 28 H 0.126 0.874 29 H 0.301 0.699 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -4.902 -9.428 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.114 4.114 4 C -0.313 4.313 5 S 0.293 5.707 6 C -0.372 4.372 7 C -0.020 4.020 8 C -0.169 4.169 9 C -0.005 4.005 10 N -0.188 5.188 11 C 0.119 3.881 12 C -0.490 4.490 13 H 0.089 0.911 14 C -0.174 4.174 15 N -0.408 5.408 16 Si 0.795 3.205 17 H -0.176 1.176 18 H -0.185 1.185 19 H -0.194 1.194 20 C -0.177 4.177 21 C -0.037 4.037 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.208 0.792 28 H 0.144 0.856 29 H 0.112 0.888 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.172 -2.828 -9.087 9.762 hybrid contribution -0.625 -1.398 1.516 2.155 sum -2.796 -4.226 -7.570 9.110 Atomic orbital electron populations 1.21674 0.94220 1.02232 1.01528 1.20277 0.96505 0.90386 1.03007 1.20015 1.02453 0.98111 0.90797 1.24992 1.06478 0.97317 1.02466 1.83331 1.74838 1.14086 0.98495 1.21953 1.19435 0.98804 0.96992 1.20046 0.95356 0.97425 0.89169 1.16953 1.17322 0.94274 0.88321 1.25739 0.91178 0.91342 0.92245 1.81020 1.14221 1.12859 1.10713 1.18402 0.87249 0.88568 0.93890 1.19756 1.40629 0.93725 0.94935 0.91071 1.26671 0.92590 0.95984 1.02126 1.69757 1.27866 1.05140 1.38078 0.85283 0.79682 0.78518 0.77019 1.17566 1.18452 1.19362 1.21004 1.07224 1.00692 0.88762 1.19450 0.97952 0.92214 0.94057 0.91894 0.94600 0.90823 0.92184 0.88884 0.79232 0.85633 0.88767 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.89 71.98 0.71 -2.81 16 2 C -0.06 -1.74 6.01 29.85 0.18 -1.56 16 3 C -0.10 -3.41 5.23 -18.73 -0.10 -3.51 16 4 C -0.18 -5.24 10.72 67.06 0.72 -4.53 16 5 S 0.03 1.03 23.23 -56.49 -1.31 -0.28 16 6 C -0.26 -10.47 6.46 23.18 0.15 -10.32 16 7 C 0.01 0.21 9.75 22.74 0.22 0.43 16 8 C -0.16 -7.53 5.92 -19.71 -0.12 -7.64 16 9 C 0.31 14.38 14.28 88.33 1.26 15.64 16 10 N -0.51 -24.42 18.54 19.00 0.35 -24.06 16 11 C 0.13 6.18 5.71 -20.04 -0.11 6.07 16 12 C -0.46 -23.06 8.56 23.34 0.20 -22.86 16 13 H 0.07 3.64 7.38 -2.91 -0.02 3.61 16 14 C 0.05 2.13 5.14 85.31 0.44 2.56 16 15 N -0.79 -35.82 10.97 21.86 0.24 -35.58 16 16 Si 0.97 35.02 29.60 68.60 2.03 37.05 16 17 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 18 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 19 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 20 C -0.15 -7.21 8.42 23.22 0.20 -7.02 16 21 C -0.03 -1.27 5.99 -20.30 -0.12 -1.39 16 22 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 23 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.91 7.71 -2.39 -0.02 1.89 16 26 H 0.09 2.04 8.09 -2.39 -0.02 2.02 16 27 H 0.19 4.00 8.06 -2.91 -0.02 3.97 16 28 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 29 H 0.30 12.12 8.30 -92.71 -0.77 11.35 16 30 H 0.13 5.88 5.76 -2.91 -0.02 5.86 16 Total: -1.00 -53.96 283.53 6.11 -47.85 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.17 Total: 11.94 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 3.63 Total: -36.92 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.59 Total: -59.65 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -1.31 Total: -0.28 kcal Total: -53.96 6.11 -47.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.461 kcal (2) G-P(sol) polarization free energy of solvation -53.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds