Wall clock time and date at job start Mon Mar 30 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47255 * 2 1 4 4 C 1.37700 * 119.67183 * 265.67331 * 3 2 1 5 5 C 1.38156 * 120.48657 * 180.02562 * 4 3 2 6 6 C 1.39236 * 120.01413 * 0.21152 * 5 4 3 7 7 C 1.43194 * 120.00375 * 179.73864 * 6 5 4 8 8 N 6.85155 * 109.64248 * 359.50185 * 2 1 3 9 9 C 1.41212 * 119.99554 * 359.56175 * 6 5 4 10 10 S 1.75769 * 130.25571 * 180.15485 * 9 6 5 11 11 C 1.69980 * 93.22165 * 180.28240 * 10 9 6 12 12 C 1.36403 * 111.95718 * 359.97438 * 11 10 9 13 13 C 1.40783 * 123.29851 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00101 * 150.10048 * 13 12 11 15 15 C 1.39751 * 119.99553 * 330.09545 * 13 12 11 16 16 N 1.31048 * 120.00545 * 351.11608 * 15 13 12 17 17 Si 1.86802 * 119.99960 * 171.11872 * 15 13 12 18 18 H 1.48501 * 109.46913 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47341 * 120.00002 * 17 15 13 20 20 H 1.48502 * 109.47085 * 239.99900 * 17 15 13 21 21 C 1.39280 * 119.52331 * 0.45707 * 9 6 5 22 22 H 1.08992 * 109.47449 * 59.99566 * 1 2 3 23 23 H 1.08997 * 109.47392 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46776 * 299.99435 * 1 2 3 25 25 H 1.09003 * 109.47158 * 240.00317 * 2 1 3 26 26 H 1.09004 * 109.47087 * 120.00258 * 2 1 3 27 27 H 1.08005 * 119.75240 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.99728 * 179.97438 * 5 4 3 29 29 H 1.08000 * 124.02281 * 179.97438 * 11 10 9 30 30 H 0.96998 * 120.00847 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3447 2.0334 -1.1930 5 6 2.8071 3.3351 -1.2126 6 6 2.9646 4.0362 -0.0200 7 6 3.4492 5.3836 -0.0401 8 7 3.8332 6.4526 -0.0561 9 6 2.6429 3.4199 1.2091 10 16 2.7324 4.0433 2.8501 11 6 2.1653 2.5941 3.5339 12 6 1.9064 1.6493 2.5847 13 6 1.4270 0.3607 2.8873 14 1 0.8020 -0.1631 2.1793 15 6 1.7600 -0.2407 4.1041 16 7 2.6538 0.3134 4.8860 17 14 0.9311 -1.8346 4.6159 18 1 -0.0320 -2.2512 3.5652 19 1 1.9584 -2.8923 4.7925 20 1 0.2085 -1.6277 5.8966 21 6 2.1779 2.1070 1.2176 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2281 1.4919 -2.1202 28 1 3.0501 3.8078 -2.1528 29 1 2.0266 2.4396 4.5937 30 1 2.8848 -0.1038 5.7307 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396230560.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:33 Heat of formation + Delta-G solvation = 50.578061 kcal Electronic energy + Delta-G solvation = -16064.192809 eV Core-core repulsion = 13528.992622 eV Total energy + Delta-G solvation = -2535.200187 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21265 -36.35082 -34.93281 -33.61728 -32.41027 -29.39849 -28.36047 -26.05484 -23.86122 -22.66089 -20.97362 -19.98861 -18.36018 -16.74852 -15.81685 -15.26435 -14.95110 -14.25879 -13.90906 -13.76311 -13.31404 -13.12581 -12.96327 -12.52945 -12.27877 -12.08643 -11.62144 -11.44529 -11.42093 -11.09337 -11.02378 -10.67587 -10.58470 -10.37143 -10.09108 -9.91830 -9.45017 -9.20437 -8.44641 -7.58496 -6.82031 -6.71774 -4.40488 1.20630 1.76310 2.61523 2.88162 3.05040 3.06662 3.08699 3.22892 3.64495 3.83062 3.93127 4.38237 4.40932 5.11749 5.24316 5.37409 5.58735 5.72117 5.89531 5.97830 6.04923 6.16644 6.35188 6.49530 6.63564 6.70007 6.76368 6.79590 7.10997 7.14461 7.35467 7.60678 7.85528 7.89290 8.36658 8.69170 8.79891 10.23851 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.008283 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.399093 B = 3379.447471 C = 4405.935128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C 0.003 3.997 4 C -0.156 4.156 5 C -0.060 4.060 6 C -0.033 4.033 7 C 0.269 3.731 8 N -0.444 5.444 9 C -0.105 4.105 10 S 0.062 5.938 11 C -0.347 4.347 12 C 0.089 3.911 13 C -0.446 4.446 14 H 0.095 0.905 15 C 0.070 3.930 16 N -0.800 5.800 17 Si 0.906 3.094 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.274 1.274 21 C -0.062 4.062 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.157 0.843 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -2.462 -7.098 7.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C 0.000 4.000 4 C -0.178 4.178 5 C -0.083 4.083 6 C -0.043 4.043 7 C -0.045 4.045 8 N -0.121 5.121 9 C -0.224 4.224 10 S 0.327 5.673 11 C -0.483 4.483 12 C 0.081 3.919 13 C -0.479 4.479 14 H 0.113 0.887 15 C -0.147 4.147 16 N -0.427 5.427 17 Si 0.731 3.269 18 H -0.183 1.183 19 H -0.201 1.201 20 H -0.200 1.200 21 C -0.073 4.073 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.174 0.826 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.444 0.486 -6.105 6.293 hybrid contribution -0.731 -2.506 -0.066 2.611 sum -2.174 -2.020 -6.171 6.848 Atomic orbital electron populations 1.21745 0.94942 1.01259 1.02192 1.20894 0.96198 0.92891 1.03854 1.19909 0.93488 0.95572 0.91028 1.20532 1.05108 0.94882 0.97299 1.20757 0.97834 0.94342 0.95336 1.15234 1.09366 0.86854 0.92895 1.25835 0.92858 0.92778 0.93030 1.81130 1.10948 1.11912 1.08085 1.22679 1.04633 0.98326 0.96745 1.82203 1.71394 1.19386 0.94273 1.24269 1.25371 0.94942 1.03712 1.17240 0.94822 0.93905 0.85978 1.19347 1.27709 0.99170 1.01668 0.88702 1.25812 0.93690 0.99119 0.96046 1.69870 1.24373 1.38409 1.10051 0.86276 0.79906 0.81245 0.79466 1.18331 1.20091 1.19954 1.19580 1.00646 0.91922 0.95128 0.93480 0.92941 0.91194 0.92193 0.87565 0.85741 0.85727 0.82565 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.03 37.16 0.34 -1.80 16 2 C -0.10 -1.63 5.33 -27.88 -0.15 -1.78 16 3 C 0.00 0.05 5.19 -103.96 -0.54 -0.49 16 4 C -0.16 -2.35 9.60 -39.81 -0.38 -2.74 16 5 C -0.06 -0.91 9.73 -39.24 -0.38 -1.29 16 6 C -0.03 -0.60 5.77 -106.47 -0.61 -1.22 16 7 C 0.27 4.97 15.05 -22.48 -0.34 4.64 16 8 N -0.44 -8.60 18.54 41.84 0.78 -7.83 16 9 C -0.11 -2.20 6.31 -38.07 -0.24 -2.44 16 10 S 0.06 1.36 22.64 -107.50 -2.43 -1.08 16 11 C -0.35 -8.52 9.45 30.07 0.28 -8.23 16 12 C 0.09 2.14 5.61 -106.18 -0.60 1.55 16 13 C -0.45 -10.50 7.31 -38.06 -0.28 -10.78 16 14 H 0.10 2.04 3.73 -52.49 -0.20 1.85 16 15 C 0.07 1.64 5.36 -17.32 -0.09 1.54 16 16 N -0.80 -19.93 11.14 55.54 0.62 -19.31 16 17 Si 0.91 17.65 29.57 -169.99 -5.03 12.63 16 18 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 19 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 C -0.06 -1.34 5.98 -105.23 -0.63 -1.97 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 1.19 6.91 -51.93 -0.36 0.83 16 25 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 26 H 0.11 1.95 5.45 -51.93 -0.28 1.67 16 27 H 0.12 1.47 8.05 -52.48 -0.42 1.05 16 28 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.16 4.09 6.72 -52.49 -0.35 3.74 16 30 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 274.48 15.07 4.14 4.14 Total: -1.00 -25.82 274.48 -7.98 -33.80 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -2.43 Total: 2.67 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -3.62 Total: -25.02 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 1.39 Total: -27.14 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.63 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.43 Total: -1.08 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -25.82 -7.98 -33.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230560.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.380 kcal (2) G-P(sol) polarization free energy of solvation -25.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds